Wall clock time and date at job start Sun Mar 7 2021 00:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 116.99985 * 2 1 4 4 O 1.20826 * 120.00319 * 359.97438 * 3 2 1 5 5 C 1.50706 * 120.00394 * 179.97438 * 3 2 1 6 6 N 1.46496 * 112.84401 * 23.80942 * 5 3 2 7 7 C 1.34786 * 120.00072 * 309.66254 * 6 5 3 8 8 O 1.21582 * 119.99613 * 359.97438 * 7 6 5 9 9 C 1.47563 * 120.00106 * 180.02562 * 7 6 5 10 10 C 1.40207 * 120.12038 * 179.72741 * 9 7 6 11 11 O 1.35645 * 120.00424 * 359.97438 * 10 9 7 12 12 C 1.38826 * 119.99459 * 179.74407 * 10 9 7 13 13 C 1.37769 * 120.24387 * 0.50588 * 12 10 9 14 14 C 1.39850 * 120.24242 * 359.77031 * 13 12 10 15 15 C 1.47817 * 119.99886 * 180.02562 * 14 13 12 16 16 C 1.35942 * 125.92698 * 359.97237 * 15 14 13 17 17 C 1.40968 * 106.73903 * 179.97438 * 16 15 14 18 18 C 1.34706 * 107.03188 * 359.97438 * 17 16 15 19 19 C 1.50700 * 125.66813 * 179.97438 * 18 17 16 20 20 O 1.42898 * 109.47138 * 65.00298 * 19 18 17 21 21 Si 1.86296 * 109.47310 * 185.00406 * 19 18 17 22 22 O 1.34345 * 108.66933 * 359.77526 * 18 17 16 23 23 C 1.39178 * 120.00238 * 359.97384 * 14 13 12 24 24 C 1.53774 * 113.61648 * 252.49913 * 5 3 2 25 25 C 1.53780 * 87.08081 * 220.01465 * 24 5 3 26 26 H 1.09007 * 113.68956 * 139.99118 * 25 24 5 27 27 O 1.42903 * 113.61690 * 270.88603 * 25 24 5 28 28 C 1.42900 * 113.99937 * 247.49531 * 27 25 24 29 29 C 1.53776 * 113.61483 * 154.99796 * 5 3 2 30 30 H 1.09002 * 109.47379 * 299.99940 * 1 2 3 31 31 H 1.09001 * 109.46782 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47085 * 60.00143 * 1 2 3 33 33 H 0.97003 * 120.00554 * 129.66803 * 6 5 3 34 34 H 0.96698 * 114.00216 * 90.00171 * 11 10 9 35 35 H 1.07996 * 119.87553 * 180.23491 * 12 10 9 36 36 H 1.07996 * 119.87700 * 179.74813 * 13 12 10 37 37 H 1.07997 * 126.63059 * 359.93647 * 16 15 14 38 38 H 1.08002 * 126.48355 * 180.02562 * 17 16 15 39 39 H 1.09005 * 109.47252 * 305.00454 * 19 18 17 40 40 H 0.96700 * 114.00059 * 180.02562 * 20 19 18 41 41 H 1.48498 * 110.00290 * 178.68132 * 21 19 18 42 42 H 1.48498 * 109.99986 * 300.00239 * 21 19 18 43 43 H 1.07995 * 120.11879 * 179.97438 * 23 14 13 44 44 H 1.08999 * 113.61693 * 334.56682 * 24 5 3 45 45 H 1.09005 * 113.61024 * 105.47112 * 24 5 3 46 46 H 1.09003 * 109.47373 * 300.00024 * 28 27 25 47 47 H 1.09000 * 109.46911 * 60.00266 * 28 27 25 48 48 H 1.08997 * 109.47411 * 179.97438 * 28 27 25 49 49 H 1.08999 * 113.62182 * 254.53670 * 29 5 3 50 50 H 1.08998 * 113.61599 * 25.43776 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 7 4.1992 0.0712 -0.5439 7 6 3.8374 -1.1449 -0.0892 8 8 2.9860 -1.2428 0.7732 9 6 4.4753 -2.3574 -0.6373 10 6 4.1048 -3.6234 -0.1620 11 8 3.1588 -3.7353 0.8036 12 6 4.7028 -4.7627 -0.6833 13 6 5.6682 -4.6546 -1.6602 14 6 6.0496 -3.3966 -2.1375 15 6 7.0855 -3.2868 -3.1861 16 6 7.7438 -4.3238 -3.7687 17 6 8.6347 -3.7637 -4.7066 18 6 8.4772 -2.4270 -4.6509 19 6 9.2280 -1.4184 -5.4816 20 8 8.8870 -1.5873 -6.8590 21 14 8.7683 0.3021 -4.9346 22 8 7.5365 -2.1426 -3.7348 23 6 5.4529 -2.2480 -1.6259 24 6 4.1588 1.7306 1.3445 25 6 5.1632 2.5627 0.5299 26 1 5.3650 3.5456 0.9559 27 8 6.3543 1.8502 0.1899 28 6 7.5300 2.3410 0.8371 29 6 4.1148 2.5823 -0.5950 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 4.8788 0.1493 -1.2317 34 1 2.2573 -3.8171 0.4636 35 1 4.4133 -5.7371 -0.3185 36 1 6.1325 -5.5446 -2.0586 37 1 7.6104 -5.3738 -3.5540 38 1 9.3143 -4.3040 -5.3490 39 1 10.3001 -1.5666 -5.3519 40 1 9.3347 -0.9700 -7.4536 41 1 9.5259 1.3057 -5.7246 42 1 7.3090 0.5169 -5.1064 43 1 5.7462 -1.2755 -1.9928 44 1 3.4746 2.3338 1.9413 45 1 4.6205 0.9240 1.9140 46 1 7.6888 3.3833 0.5606 47 1 7.4079 2.2663 1.9177 48 1 8.3901 1.7474 0.5272 49 1 4.5409 2.4635 -1.5911 50 1 3.4186 3.4183 -0.5284 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14247462_13259648.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:15:10 Heat of formation + Delta-G solvation = -130.698201 kcal Electronic energy + Delta-G solvation = -40066.294987 eV Core-core repulsion = 34802.119535 eV Total energy + Delta-G solvation = -5264.175452 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 404.149 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -43.64490 -42.37327 -41.10434 -40.20269 -39.14704 -38.15127 -37.76888 -37.50964 -36.69630 -34.36867 -33.98989 -32.76080 -32.14545 -30.10343 -29.10239 -27.82845 -27.14147 -26.46195 -26.33729 -25.08491 -23.49442 -22.98032 -22.50975 -21.77657 -21.10062 -20.34091 -19.57069 -18.97567 -18.90951 -18.83604 -18.05449 -17.59695 -17.32616 -17.23804 -17.00183 -16.94853 -16.54495 -16.44781 -16.19429 -16.12810 -15.83925 -15.60112 -15.44915 -15.02166 -14.74629 -14.63696 -14.43052 -14.25031 -14.18703 -14.05155 -13.92714 -13.65130 -13.58098 -13.46741 -13.22326 -13.12275 -13.01958 -12.83899 -12.78218 -12.55782 -12.15875 -12.06971 -12.01402 -11.74844 -11.51584 -11.31280 -11.00468 -10.72925 -10.66463 -10.56587 -10.38110 -10.20911 -10.03441 -8.84648 -5.03555 -0.49412 -0.14051 0.80377 1.09173 1.20394 1.37811 1.53570 1.71272 1.87214 1.90665 1.95775 2.07651 2.51530 2.72090 3.09618 3.13059 3.19812 3.32492 3.44942 3.48301 3.59968 3.68240 3.82101 3.84384 4.02165 4.03272 4.13907 4.16537 4.26305 4.31138 4.34511 4.39581 4.43038 4.43625 4.49540 4.52327 4.61795 4.66227 4.68758 4.74014 4.75444 4.77143 4.81961 4.85375 4.87718 5.07090 5.16292 5.21499 5.36369 5.46024 5.50726 5.57422 6.06042 6.08185 6.24947 6.50000 6.72657 6.89438 7.33636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.314 6.314 3 C 0.470 3.530 4 O -0.509 6.509 5 C 0.163 3.837 6 N -0.701 5.701 7 C 0.558 3.442 8 O -0.477 6.477 9 C -0.157 4.157 10 C 0.179 3.821 11 O -0.475 6.475 12 C -0.150 4.150 13 C -0.054 4.054 14 C -0.033 4.033 15 C 0.038 3.962 16 C -0.189 4.189 17 C -0.168 4.168 18 C -0.004 4.004 19 C -0.037 4.037 20 O -0.533 6.533 21 Si 0.695 3.305 22 O -0.164 6.164 23 C -0.053 4.053 24 C -0.147 4.147 25 C 0.068 3.932 26 H 0.091 0.909 27 O -0.366 6.366 28 C 0.030 3.970 29 C -0.125 4.125 30 H 0.061 0.939 31 H 0.099 0.901 32 H 0.057 0.943 33 H 0.409 0.591 34 H 0.398 0.602 35 H 0.145 0.855 36 H 0.139 0.861 37 H 0.155 0.845 38 H 0.153 0.847 39 H 0.097 0.903 40 H 0.387 0.613 41 H -0.252 1.252 42 H -0.250 1.250 43 H 0.136 0.864 44 H 0.107 0.893 45 H 0.093 0.907 46 H 0.046 0.954 47 H 0.044 0.956 48 H 0.091 0.909 49 H 0.094 0.906 50 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.184 0.002 -1.179 5.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.228 6.228 3 C 0.311 3.689 4 O -0.398 6.398 5 C 0.074 3.926 6 N -0.357 5.357 7 C 0.345 3.655 8 O -0.350 6.350 9 C -0.160 4.160 10 C 0.133 3.867 11 O -0.286 6.286 12 C -0.168 4.168 13 C -0.072 4.072 14 C -0.034 4.034 15 C -0.012 4.012 16 C -0.208 4.208 17 C -0.187 4.187 18 C -0.054 4.054 19 C -0.146 4.146 20 O -0.342 6.342 21 Si 0.594 3.406 22 O -0.061 6.061 23 C -0.071 4.071 24 C -0.186 4.186 25 C 0.010 3.990 26 H 0.109 0.891 27 O -0.284 6.284 28 C -0.066 4.066 29 C -0.162 4.162 30 H 0.080 0.920 31 H 0.117 0.883 32 H 0.076 0.924 33 H 0.246 0.754 34 H 0.257 0.743 35 H 0.162 0.838 36 H 0.157 0.843 37 H 0.172 0.828 38 H 0.171 0.829 39 H 0.115 0.885 40 H 0.237 0.763 41 H -0.177 1.177 42 H -0.174 1.174 43 H 0.154 0.846 44 H 0.125 0.875 45 H 0.112 0.888 46 H 0.064 0.936 47 H 0.062 0.938 48 H 0.110 0.890 49 H 0.113 0.887 50 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.958 0.677 -0.204 4.021 hybrid contribution 0.121 -0.149 -1.756 1.767 sum 4.079 0.528 -1.960 4.556 Atomic orbital electron populations 1.23282 0.77682 1.03554 1.02048 1.86991 1.22170 1.31337 1.82298 1.23619 0.91002 0.82164 0.72072 1.90677 1.66262 1.36670 1.46152 1.21002 0.85381 0.87409 0.98811 1.45454 1.43219 1.03729 1.43275 1.17922 0.82418 0.82466 0.82727 1.90869 1.29344 1.85837 1.28930 1.20214 1.01653 0.93811 1.00360 1.18566 0.91221 0.90285 0.86662 1.84746 1.18429 1.95178 1.30260 1.21377 0.98895 0.98947 0.97579 1.21104 0.95104 0.96281 0.94744 1.17566 0.96047 0.93849 0.95898 1.20250 0.99049 0.83287 0.98624 1.21834 0.99511 0.99823 0.99584 1.21515 1.02762 0.92952 1.01483 1.21245 0.94322 0.94923 0.94865 1.23795 0.99367 1.08062 0.83400 1.86573 1.71762 1.60774 1.15080 0.94545 0.82102 0.73215 0.90787 1.83905 1.44588 1.33457 1.44196 1.21329 0.93483 0.98563 0.93767 1.23889 0.98380 1.01224 0.95124 1.22972 0.85267 0.95329 0.95449 0.89114 1.87855 1.15052 1.57170 1.68353 1.22876 0.87278 0.99421 0.97051 1.23621 0.97340 0.95094 1.00171 0.92042 0.88295 0.92400 0.75357 0.74277 0.83757 0.84296 0.82758 0.82907 0.88541 0.76328 1.17675 1.17370 0.84636 0.87491 0.88794 0.93584 0.93759 0.89043 0.88720 0.85615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.06 10.56 101.05 1.07 1.12 16 2 O -0.31 -1.38 6.34 -47.59 -0.30 -1.68 16 3 C 0.47 1.98 7.04 36.01 0.25 2.24 16 4 O -0.51 -2.99 15.81 -18.75 -0.30 -3.29 16 5 C 0.16 0.26 1.11 -132.16 -0.15 0.11 16 6 N -0.70 -0.83 4.71 -48.95 -0.23 -1.06 16 7 C 0.56 1.66 7.09 -12.45 -0.09 1.58 16 8 O -0.48 -2.58 11.72 -26.89 -0.32 -2.90 16 9 C -0.16 -0.27 5.88 -104.90 -0.62 -0.89 16 10 C 0.18 0.25 6.72 -38.62 -0.26 -0.01 16 11 O -0.47 -0.91 11.55 -40.59 -0.47 -1.38 16 12 C -0.15 0.07 9.96 -39.54 -0.39 -0.32 16 13 C -0.05 0.04 9.54 -39.15 -0.37 -0.33 16 14 C -0.03 -0.02 5.87 -105.03 -0.62 -0.64 16 15 C 0.04 0.05 7.03 -36.49 -0.26 -0.20 16 16 C -0.19 -0.14 10.26 -39.37 -0.40 -0.54 16 17 C -0.17 -0.21 10.78 -39.80 -0.43 -0.64 16 18 C 0.00 -0.01 6.24 -35.56 -0.22 -0.23 16 19 C -0.04 0.03 2.97 36.01 0.11 0.13 16 20 O -0.53 -0.16 12.86 -35.23 -0.45 -0.61 16 21 Si 0.69 -0.86 32.11 -169.99 -5.46 -6.32 16 22 O -0.16 -0.32 8.80 4.57 0.04 -0.28 16 23 C -0.05 -0.03 9.20 -38.78 -0.36 -0.39 16 24 C -0.15 -0.10 7.25 -25.92 -0.19 -0.29 16 25 C 0.07 -0.08 4.37 -25.92 -0.11 -0.19 16 26 H 0.09 -0.24 7.87 -51.92 -0.41 -0.65 16 27 O -0.37 0.23 10.01 -35.23 -0.35 -0.12 16 28 C 0.03 -0.08 10.85 101.05 1.10 1.02 16 29 C -0.12 0.08 7.06 -25.92 -0.18 -0.10 16 30 H 0.06 0.13 8.13 -51.93 -0.42 -0.29 16 31 H 0.10 -0.02 8.14 -51.93 -0.42 -0.44 16 32 H 0.06 0.10 8.13 -51.93 -0.42 -0.33 16 33 H 0.41 -0.20 6.50 -40.82 -0.27 -0.47 16 34 H 0.40 -0.66 9.06 45.56 0.41 -0.24 16 35 H 0.14 -0.33 8.06 -52.49 -0.42 -0.76 16 36 H 0.14 -0.42 6.96 -52.49 -0.37 -0.78 16 37 H 0.15 -0.26 7.24 -52.49 -0.38 -0.64 16 38 H 0.15 -0.02 8.06 -52.49 -0.42 -0.45 16 39 H 0.10 -0.30 7.96 -51.93 -0.41 -0.72 16 40 H 0.39 -1.61 8.74 45.56 0.40 -1.21 16 41 H -0.25 0.02 7.11 56.52 0.40 0.42 16 42 H -0.25 -0.60 7.11 56.52 0.40 -0.20 16 43 H 0.14 -0.09 6.24 -52.49 -0.33 -0.42 16 44 H 0.11 0.04 8.09 -51.93 -0.42 -0.38 16 45 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 46 H 0.05 -0.16 8.14 -51.93 -0.42 -0.58 16 47 H 0.04 -0.11 8.14 -51.93 -0.42 -0.53 16 48 H 0.09 -0.31 8.14 -51.93 -0.42 -0.74 16 49 H 0.09 -0.15 8.11 -51.93 -0.42 -0.58 16 50 H 0.13 -0.08 7.39 -51.93 -0.38 -0.47 16 LS Contribution 425.17 15.07 6.41 6.41 Total: 0.00 -11.32 425.17 -9.13 -20.45 By element: Atomic # 1 Polarization: -5.10 SS G_CDS: -5.58 Total: -10.68 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: -2.12 Total: 1.44 kcal Atomic # 7 Polarization: -0.83 SS G_CDS: -0.23 Total: -1.06 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: -2.15 Total: -10.25 kcal Atomic # 14 Polarization: -0.86 SS G_CDS: -5.46 Total: -6.32 kcal Total LS contribution 6.41 Total: 6.41 kcal Total: -11.32 -9.13 -20.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14247462_13259648.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.245 kcal (2) G-P(sol) polarization free energy of solvation -11.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds