Wall clock time and date at job start Sun Mar 7 2021 00:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 116.99985 * 2 1 4 4 O 1.20826 * 120.00319 * 359.97438 * 3 2 1 5 5 C 1.50706 * 120.00394 * 179.97438 * 3 2 1 6 6 N 1.46496 * 112.84401 * 23.80942 * 5 3 2 7 7 C 1.34786 * 120.00072 * 309.66254 * 6 5 3 8 8 O 1.21582 * 119.99613 * 359.97438 * 7 6 5 9 9 C 1.47563 * 120.00106 * 180.02562 * 7 6 5 10 10 C 1.40207 * 120.12038 * 179.72741 * 9 7 6 11 11 O 1.35645 * 120.00424 * 359.97438 * 10 9 7 12 12 C 1.38826 * 119.99459 * 179.74407 * 10 9 7 13 13 C 1.37769 * 120.24387 * 0.50588 * 12 10 9 14 14 C 1.39850 * 120.24242 * 359.77031 * 13 12 10 15 15 C 1.47817 * 119.99886 * 180.02562 * 14 13 12 16 16 C 1.35942 * 125.92698 * 359.97237 * 15 14 13 17 17 C 1.40968 * 106.73903 * 179.97438 * 16 15 14 18 18 C 1.34706 * 107.03188 * 359.97438 * 17 16 15 19 19 C 1.50700 * 125.66813 * 179.97438 * 18 17 16 20 20 O 1.42898 * 109.47138 * 65.00298 * 19 18 17 21 21 Si 1.86296 * 109.47310 * 185.00406 * 19 18 17 22 22 O 1.34345 * 108.66933 * 359.77526 * 18 17 16 23 23 C 1.39178 * 120.00238 * 359.97384 * 14 13 12 24 24 C 1.53774 * 113.61648 * 252.49913 * 5 3 2 25 25 C 1.53780 * 87.08081 * 220.01465 * 24 5 3 26 26 H 1.09007 * 113.68956 * 139.99118 * 25 24 5 27 27 O 1.42903 * 113.61690 * 270.88603 * 25 24 5 28 28 C 1.42900 * 113.99937 * 247.49531 * 27 25 24 29 29 C 1.53776 * 113.61483 * 154.99796 * 5 3 2 30 30 H 1.09002 * 109.47379 * 299.99940 * 1 2 3 31 31 H 1.09001 * 109.46782 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47085 * 60.00143 * 1 2 3 33 33 H 0.97003 * 120.00554 * 129.66803 * 6 5 3 34 34 H 0.96698 * 114.00216 * 90.00171 * 11 10 9 35 35 H 1.07996 * 119.87553 * 180.23491 * 12 10 9 36 36 H 1.07996 * 119.87700 * 179.74813 * 13 12 10 37 37 H 1.07997 * 126.63059 * 359.93647 * 16 15 14 38 38 H 1.08002 * 126.48355 * 180.02562 * 17 16 15 39 39 H 1.09005 * 109.47252 * 305.00454 * 19 18 17 40 40 H 0.96700 * 114.00059 * 180.02562 * 20 19 18 41 41 H 1.48498 * 110.00290 * 178.68132 * 21 19 18 42 42 H 1.48498 * 109.99986 * 300.00239 * 21 19 18 43 43 H 1.07995 * 120.11879 * 179.97438 * 23 14 13 44 44 H 1.08999 * 113.61693 * 334.56682 * 24 5 3 45 45 H 1.09005 * 113.61024 * 105.47112 * 24 5 3 46 46 H 1.09003 * 109.47373 * 300.00024 * 28 27 25 47 47 H 1.09000 * 109.46911 * 60.00266 * 28 27 25 48 48 H 1.08997 * 109.47411 * 179.97438 * 28 27 25 49 49 H 1.08999 * 113.62182 * 254.53670 * 29 5 3 50 50 H 1.08998 * 113.61599 * 25.43776 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 7 4.1992 0.0712 -0.5439 7 6 3.8374 -1.1449 -0.0892 8 8 2.9860 -1.2428 0.7732 9 6 4.4753 -2.3574 -0.6373 10 6 4.1048 -3.6234 -0.1620 11 8 3.1588 -3.7353 0.8036 12 6 4.7028 -4.7627 -0.6833 13 6 5.6682 -4.6546 -1.6602 14 6 6.0496 -3.3966 -2.1375 15 6 7.0855 -3.2868 -3.1861 16 6 7.7438 -4.3238 -3.7687 17 6 8.6347 -3.7637 -4.7066 18 6 8.4772 -2.4270 -4.6509 19 6 9.2280 -1.4184 -5.4816 20 8 8.8870 -1.5873 -6.8590 21 14 8.7683 0.3021 -4.9346 22 8 7.5365 -2.1426 -3.7348 23 6 5.4529 -2.2480 -1.6259 24 6 4.1588 1.7306 1.3445 25 6 5.1632 2.5627 0.5299 26 1 5.3650 3.5456 0.9559 27 8 6.3543 1.8502 0.1899 28 6 7.5300 2.3410 0.8371 29 6 4.1148 2.5823 -0.5950 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 4.8788 0.1493 -1.2317 34 1 2.2573 -3.8171 0.4636 35 1 4.4133 -5.7371 -0.3185 36 1 6.1325 -5.5446 -2.0586 37 1 7.6104 -5.3738 -3.5540 38 1 9.3143 -4.3040 -5.3490 39 1 10.3001 -1.5666 -5.3519 40 1 9.3347 -0.9700 -7.4536 41 1 9.5259 1.3057 -5.7246 42 1 7.3090 0.5169 -5.1064 43 1 5.7462 -1.2755 -1.9928 44 1 3.4746 2.3338 1.9413 45 1 4.6205 0.9240 1.9140 46 1 7.6888 3.3833 0.5606 47 1 7.4079 2.2663 1.9177 48 1 8.3901 1.7474 0.5272 49 1 4.5409 2.4635 -1.5911 50 1 3.4186 3.4183 -0.5284 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14247462_13259648.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:15:08 Heat of formation + Delta-G solvation = -132.154504 kcal Electronic energy + Delta-G solvation = -40066.358137 eV Core-core repulsion = 34802.119535 eV Total energy + Delta-G solvation = -5264.238602 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 404.149 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -43.66508 -42.52455 -41.20765 -40.33342 -39.25635 -38.11272 -37.79476 -37.67690 -36.83980 -34.45940 -34.04441 -32.77082 -32.15138 -30.09430 -29.26620 -27.72184 -27.16822 -26.48771 -26.31851 -25.13835 -23.50648 -23.06196 -22.59295 -21.80181 -21.14107 -20.49022 -19.62352 -19.10819 -19.00116 -18.77806 -18.20961 -17.71101 -17.44180 -17.28476 -17.05178 -17.02949 -16.56627 -16.46316 -16.21446 -16.02693 -15.80772 -15.68371 -15.54006 -15.09045 -14.84001 -14.62488 -14.46853 -14.38584 -14.23605 -14.04706 -13.92197 -13.67922 -13.60460 -13.48416 -13.23370 -13.11581 -13.05739 -12.98654 -12.78172 -12.54123 -12.15683 -12.10232 -11.99433 -11.85094 -11.73723 -11.49123 -11.02903 -10.76526 -10.66652 -10.56993 -10.39981 -10.27810 -10.12302 -8.86449 -4.94607 -0.51026 -0.15757 0.78795 0.92444 1.17302 1.41171 1.53082 1.70061 1.74436 1.85355 1.94795 1.96928 2.60831 2.68347 3.05557 3.15199 3.23532 3.30315 3.46584 3.51454 3.62320 3.69757 3.73770 3.86658 4.04855 4.08788 4.18377 4.21229 4.24012 4.24551 4.34779 4.42489 4.46728 4.49237 4.59027 4.62282 4.63196 4.68806 4.69738 4.71972 4.75421 4.80647 4.83463 4.91515 4.98383 5.06790 5.17918 5.24632 5.26037 5.30891 5.48146 5.55272 6.03976 6.21405 6.39926 6.52691 6.60470 6.77592 7.18049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.325 6.325 3 C 0.464 3.536 4 O -0.533 6.533 5 C 0.153 3.847 6 N -0.692 5.692 7 C 0.555 3.445 8 O -0.508 6.508 9 C -0.172 4.172 10 C 0.167 3.833 11 O -0.491 6.491 12 C -0.146 4.146 13 C -0.046 4.046 14 C -0.042 4.042 15 C 0.023 3.977 16 C -0.189 4.189 17 C -0.181 4.181 18 C -0.020 4.020 19 C -0.042 4.042 20 O -0.555 6.555 21 Si 0.761 3.239 22 O -0.176 6.176 23 C -0.053 4.053 24 C -0.148 4.148 25 C 0.079 3.921 26 H 0.112 0.888 27 O -0.379 6.379 28 C 0.024 3.976 29 C -0.117 4.117 30 H 0.056 0.944 31 H 0.119 0.881 32 H 0.059 0.941 33 H 0.416 0.584 34 H 0.409 0.591 35 H 0.165 0.835 36 H 0.166 0.834 37 H 0.177 0.823 38 H 0.164 0.836 39 H 0.126 0.874 40 H 0.404 0.596 41 H -0.264 1.264 42 H -0.305 1.305 43 H 0.141 0.859 44 H 0.107 0.893 45 H 0.078 0.922 46 H 0.058 0.942 47 H 0.043 0.957 48 H 0.100 0.900 49 H 0.105 0.895 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.871 -0.658 -1.795 7.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.239 6.239 3 C 0.307 3.693 4 O -0.423 6.423 5 C 0.064 3.936 6 N -0.348 5.348 7 C 0.342 3.658 8 O -0.383 6.383 9 C -0.176 4.176 10 C 0.121 3.879 11 O -0.305 6.305 12 C -0.164 4.164 13 C -0.064 4.064 14 C -0.042 4.042 15 C -0.027 4.027 16 C -0.208 4.208 17 C -0.200 4.200 18 C -0.069 4.069 19 C -0.151 4.151 20 O -0.367 6.367 21 Si 0.665 3.335 22 O -0.074 6.074 23 C -0.072 4.072 24 C -0.187 4.187 25 C 0.021 3.979 26 H 0.130 0.870 27 O -0.297 6.297 28 C -0.071 4.071 29 C -0.155 4.155 30 H 0.075 0.925 31 H 0.138 0.862 32 H 0.077 0.923 33 H 0.255 0.745 34 H 0.270 0.730 35 H 0.182 0.818 36 H 0.183 0.817 37 H 0.195 0.805 38 H 0.182 0.818 39 H 0.144 0.856 40 H 0.257 0.743 41 H -0.189 1.189 42 H -0.233 1.233 43 H 0.159 0.841 44 H 0.126 0.874 45 H 0.097 0.903 46 H 0.077 0.923 47 H 0.062 0.938 48 H 0.118 0.882 49 H 0.124 0.876 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.690 0.019 -0.839 5.752 hybrid contribution -0.451 0.025 -1.604 1.667 sum 5.239 0.043 -2.443 5.781 Atomic orbital electron populations 1.23447 0.76818 1.04913 1.01868 1.87004 1.23252 1.31590 1.82080 1.24190 0.92073 0.81792 0.71271 1.90648 1.67016 1.37203 1.47421 1.21257 0.83932 0.88398 1.00046 1.45389 1.42978 1.03330 1.43076 1.18195 0.82043 0.83183 0.82335 1.90841 1.30791 1.86312 1.30376 1.20196 1.02501 0.93550 1.01305 1.18814 0.91460 0.90826 0.86831 1.84703 1.19387 1.95251 1.31111 1.21572 0.98457 0.99135 0.97262 1.21403 0.94361 0.96655 0.93941 1.17701 0.96114 0.94376 0.95995 1.20478 0.99589 0.83475 0.99139 1.22158 0.98859 1.00793 0.98973 1.21791 1.03213 0.93106 1.01863 1.21734 0.94335 0.95833 0.95017 1.24012 1.00736 1.07519 0.82810 1.86521 1.72599 1.61791 1.15789 0.93768 0.77817 0.72175 0.89777 1.83896 1.44927 1.34014 1.44566 1.21377 0.93210 0.99168 0.93443 1.23902 0.98968 1.01106 0.94693 1.22926 0.84843 0.95689 0.94479 0.86989 1.87839 1.15582 1.57722 1.68597 1.23026 0.86798 1.00354 0.96963 1.23627 0.97265 0.93665 1.00926 0.92514 0.86241 0.92253 0.74484 0.73003 0.81756 0.81700 0.80532 0.81824 0.85612 0.74322 1.18930 1.23279 0.84095 0.87438 0.90341 0.92332 0.93840 0.88182 0.87623 0.85500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 10.56 113.37 1.20 1.32 16 2 O -0.33 -3.49 6.34 -43.43 -0.28 -3.76 16 3 C 0.46 4.77 7.04 71.24 0.50 5.27 16 4 O -0.53 -7.21 15.81 21.96 0.35 -6.87 16 5 C 0.15 0.69 1.11 3.38 0.00 0.70 16 6 N -0.69 -2.64 4.71 -427.03 -2.01 -4.65 16 7 C 0.55 4.28 7.09 86.70 0.61 4.89 16 8 O -0.51 -6.57 11.72 26.80 0.31 -6.26 16 9 C -0.17 -0.80 5.88 -20.04 -0.12 -0.92 16 10 C 0.17 0.59 6.72 22.89 0.15 0.74 16 11 O -0.49 -2.45 11.55 -68.60 -0.79 -3.24 16 12 C -0.15 0.23 9.96 22.30 0.22 0.45 16 13 C -0.05 0.12 9.54 22.55 0.22 0.33 16 14 C -0.04 -0.05 5.87 -20.13 -0.12 -0.16 16 15 C 0.02 0.06 7.03 24.27 0.17 0.23 16 16 C -0.19 -0.09 10.26 22.41 0.23 0.14 16 17 C -0.18 -0.31 10.78 22.13 0.24 -0.08 16 18 C -0.02 -0.05 6.24 24.88 0.16 0.10 16 19 C -0.04 0.09 2.97 71.24 0.21 0.30 16 20 O -0.56 -0.05 12.86 -148.98 -1.92 -1.96 16 21 Si 0.76 -1.80 32.11 68.60 2.20 0.41 16 22 O -0.18 -0.74 8.80 -6.57 -0.06 -0.80 16 23 C -0.05 -0.11 9.20 22.79 0.21 0.10 16 24 C -0.15 -0.39 7.25 31.12 0.23 -0.16 16 25 C 0.08 -0.17 4.37 31.12 0.14 -0.03 16 26 H 0.11 -0.70 7.87 -2.38 -0.02 -0.72 16 27 O -0.38 0.49 10.01 -148.98 -1.49 -1.00 16 28 C 0.02 -0.14 10.85 113.37 1.23 1.09 16 29 C -0.12 0.10 7.06 31.12 0.22 0.32 16 30 H 0.06 0.35 8.13 -2.39 -0.02 0.33 16 31 H 0.12 0.07 8.14 -2.39 -0.02 0.05 16 32 H 0.06 0.29 8.13 -2.38 -0.02 0.27 16 33 H 0.42 0.11 6.50 -92.71 -0.60 -0.49 16 34 H 0.41 -0.77 9.06 -74.06 -0.67 -1.44 16 35 H 0.16 -0.98 8.06 -2.91 -0.02 -1.00 16 36 H 0.17 -1.36 6.96 -2.91 -0.02 -1.39 16 37 H 0.18 -0.93 7.24 -2.91 -0.02 -0.95 16 38 H 0.16 -0.21 8.06 -2.91 -0.02 -0.24 16 39 H 0.13 -1.02 7.96 -2.38 -0.02 -1.04 16 40 H 0.40 -3.63 8.74 -74.06 -0.65 -4.27 16 41 H -0.26 0.17 7.11 99.48 0.71 0.87 16 42 H -0.31 -2.09 7.11 99.48 0.71 -1.38 16 43 H 0.14 -0.02 6.24 -2.91 -0.02 -0.04 16 44 H 0.11 0.23 8.09 -2.39 -0.02 0.21 16 45 H 0.08 0.45 8.14 -2.38 -0.02 0.43 16 46 H 0.06 -0.46 8.14 -2.39 -0.02 -0.48 16 47 H 0.04 -0.23 8.14 -2.39 -0.02 -0.25 16 48 H 0.10 -0.74 8.14 -2.39 -0.02 -0.76 16 49 H 0.11 -0.34 8.11 -2.39 -0.02 -0.36 16 50 H 0.13 -0.11 7.39 -2.39 -0.02 -0.12 16 Total: 0.00 -27.45 425.17 1.18 -26.28 By element: Atomic # 1 Polarization: -11.94 SS G_CDS: -0.84 Total: -12.78 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: 5.70 Total: 14.64 kcal Atomic # 7 Polarization: -2.64 SS G_CDS: -2.01 Total: -4.65 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -3.87 Total: -23.89 kcal Atomic # 14 Polarization: -1.80 SS G_CDS: 2.20 Total: 0.41 kcal Total: -27.45 1.18 -26.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14247462_13259648.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.879 kcal (2) G-P(sol) polarization free energy of solvation -27.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds