Wall clock time and date at job start Sun Mar 7 2021 00:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34226 * 117.00351 * 2 1 4 4 O 1.20826 * 120.00082 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00018 * 180.02562 * 3 2 1 6 6 N 1.46499 * 112.84851 * 324.05899 * 5 3 2 7 7 C 1.34777 * 119.99781 * 293.63861 * 6 5 3 8 8 O 1.21510 * 120.00296 * 354.99052 * 7 6 5 9 9 C 1.48178 * 119.99714 * 174.98782 * 7 6 5 10 10 N 1.32710 * 119.72538 * 359.97438 * 9 7 6 11 11 C 1.31519 * 121.64724 * 180.02562 * 10 9 7 12 12 C 1.38564 * 120.90118 * 0.02562 * 11 10 9 13 13 C 1.50690 * 120.32519 * 179.97438 * 12 11 10 14 14 O 1.42902 * 109.47188 * 120.00188 * 13 12 11 15 15 Si 1.86301 * 109.47380 * 0.02562 * 13 12 11 16 16 C 1.38629 * 119.34883 * 359.97438 * 12 11 10 17 17 C 1.38590 * 118.49139 * 0.02562 * 16 12 11 18 18 C 1.53786 * 113.61258 * 192.86264 * 5 3 2 19 19 C 1.53781 * 87.07707 * 270.79780 * 18 5 3 20 20 H 1.08996 * 113.61437 * 89.11974 * 19 18 5 21 21 O 1.42903 * 113.61288 * 220.01906 * 19 18 5 22 22 C 1.42902 * 114.00126 * 210.00146 * 21 19 18 23 23 C 1.53774 * 87.08670 * 334.56712 * 19 18 5 24 24 H 1.09001 * 109.46924 * 300.00200 * 1 2 3 25 25 H 1.08994 * 109.47245 * 59.99865 * 1 2 3 26 26 H 1.08996 * 109.47702 * 180.02562 * 1 2 3 27 27 H 0.97002 * 120.00419 * 113.64973 * 6 5 3 28 28 H 1.08000 * 119.55401 * 179.72295 * 11 10 9 29 29 H 1.08993 * 109.47576 * 239.99865 * 13 12 11 30 30 H 0.96707 * 113.99805 * 299.99638 * 14 13 12 31 31 H 1.48496 * 110.00449 * 179.97438 * 15 13 12 32 32 H 1.48503 * 109.99955 * 301.32265 * 15 13 12 33 33 H 1.08000 * 120.75156 * 180.02562 * 16 12 11 34 34 H 1.08002 * 120.46900 * 180.02562 * 17 16 12 35 35 H 1.08993 * 113.61668 * 25.34591 * 18 5 3 36 36 H 1.08997 * 113.60763 * 156.16842 * 18 5 3 37 37 H 1.08996 * 109.47412 * 300.00225 * 22 21 19 38 38 H 1.09000 * 109.46799 * 60.00120 * 22 21 19 39 39 H 1.08999 * 109.47214 * 179.97438 * 22 21 19 40 40 H 1.08998 * 113.61832 * 270.88761 * 23 19 18 41 41 H 1.09006 * 113.61710 * 139.98052 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2747 -0.0006 6 7 4.1919 0.2128 0.7914 7 6 4.0242 0.1814 2.1283 8 8 3.4314 1.0826 2.6876 9 6 4.5626 -0.9522 2.9161 10 7 5.2087 -1.9339 2.2995 11 6 5.7015 -2.9581 2.9613 12 6 5.5623 -3.0500 4.3369 13 6 6.1316 -4.2296 5.0821 14 8 7.0904 -3.7717 6.0377 15 14 6.9594 -5.3846 3.8773 16 6 4.8943 -2.0461 5.0208 17 6 4.3855 -0.9790 4.2976 18 6 4.1098 2.6787 0.3132 19 6 4.0436 2.9561 -1.1980 20 1 3.0856 3.3592 -1.5263 21 8 5.1590 3.6999 -1.6928 22 6 4.8539 4.5248 -2.8191 23 6 4.1760 1.4379 -1.4030 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 4.7269 -0.4677 0.3536 28 1 6.2174 -3.7406 2.4248 29 1 5.3283 -4.7561 5.5972 30 1 7.8355 -3.2932 5.6490 31 1 7.5256 -6.5519 4.5998 32 1 5.9806 -5.8429 2.8588 33 1 4.7731 -2.0946 6.0929 34 1 3.8599 -0.1792 4.7980 35 1 3.4250 3.2909 0.8999 36 1 5.1235 2.6749 0.7138 37 1 4.4935 3.9026 -3.6382 38 1 4.0836 5.2452 -2.5438 39 1 5.7519 5.0563 -3.1341 40 1 5.2083 1.0950 -1.4728 41 1 3.5447 1.0483 -2.2016 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14247462_13287726.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:15:16 Heat of formation + Delta-G solvation = -112.742061 kcal Electronic energy + Delta-G solvation = -27753.512195 eV Core-core repulsion = 23602.269894 eV Total energy + Delta-G solvation = -4151.242302 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 323.129 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.71453 -41.74453 -40.50088 -39.77915 -37.90341 -37.83256 -37.24500 -34.69257 -33.54068 -32.96124 -29.47847 -28.20639 -27.64450 -27.14145 -25.99992 -25.02532 -24.07283 -23.11532 -21.91676 -20.86327 -19.62494 -19.16435 -18.54265 -18.20773 -17.72149 -17.53811 -17.38053 -16.92016 -16.70473 -16.46266 -16.29166 -15.99250 -15.94239 -15.57121 -15.18246 -14.95722 -14.51756 -14.47660 -14.34633 -14.26157 -13.75480 -13.62662 -13.53664 -13.38152 -13.09197 -12.62401 -12.53978 -12.38153 -12.17010 -12.07391 -12.00320 -11.85498 -11.50233 -11.07751 -10.71291 -10.63964 -10.59417 -10.51705 -10.21005 -4.98066 -0.64268 0.06900 0.74256 1.25228 1.29514 1.52292 1.65467 1.69505 1.99965 2.61618 2.72842 2.89413 3.00968 3.14088 3.40116 3.43073 3.48664 3.51515 3.65575 3.78229 3.93215 3.94674 4.10829 4.12995 4.17507 4.39515 4.41908 4.45924 4.53613 4.54023 4.55948 4.56865 4.65129 4.72257 4.76626 4.86361 4.87854 4.97312 5.04857 5.14099 5.36458 6.11130 6.13701 6.41740 6.54907 6.73046 6.87878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.355 6.355 3 C 0.476 3.524 4 O -0.518 6.518 5 C 0.150 3.850 6 N -0.676 5.676 7 C 0.574 3.426 8 O -0.555 6.555 9 C 0.066 3.934 10 N -0.454 5.454 11 C 0.103 3.897 12 C -0.139 4.139 13 C -0.070 4.070 14 O -0.551 6.551 15 Si 0.776 3.224 16 C -0.053 4.053 17 C -0.114 4.114 18 C -0.115 4.115 19 C 0.067 3.933 20 H 0.096 0.904 21 O -0.385 6.385 22 C 0.021 3.979 23 C -0.122 4.122 24 H 0.054 0.946 25 H 0.072 0.928 26 H 0.131 0.869 27 H 0.431 0.569 28 H 0.189 0.811 29 H 0.119 0.881 30 H 0.398 0.602 31 H -0.297 1.297 32 H -0.276 1.276 33 H 0.160 0.840 34 H 0.147 0.853 35 H 0.071 0.929 36 H 0.112 0.888 37 H 0.056 0.944 38 H 0.045 0.955 39 H 0.099 0.901 40 H 0.139 0.861 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.931 -4.179 -3.717 6.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.271 6.271 3 C 0.317 3.683 4 O -0.405 6.405 5 C 0.061 3.939 6 N -0.331 5.331 7 C 0.360 3.640 8 O -0.432 6.432 9 C -0.071 4.071 10 N -0.165 5.165 11 C -0.057 4.057 12 C -0.142 4.142 13 C -0.181 4.181 14 O -0.359 6.359 15 Si 0.681 3.319 16 C -0.079 4.079 17 C -0.135 4.135 18 C -0.153 4.153 19 C 0.008 3.992 20 H 0.114 0.886 21 O -0.304 6.304 22 C -0.075 4.075 23 C -0.160 4.160 24 H 0.073 0.927 25 H 0.090 0.910 26 H 0.149 0.851 27 H 0.271 0.729 28 H 0.206 0.794 29 H 0.136 0.864 30 H 0.248 0.752 31 H -0.225 1.225 32 H -0.202 1.202 33 H 0.178 0.822 34 H 0.165 0.835 35 H 0.090 0.910 36 H 0.130 0.870 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.118 0.882 40 H 0.157 0.843 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 3.115 -4.250 -4.120 6.689 hybrid contribution -1.284 0.077 1.243 1.788 sum 1.831 -4.172 -2.878 5.389 Atomic orbital electron populations 1.23590 0.74538 1.05833 1.02646 1.86505 1.25072 1.32297 1.83196 1.23551 0.91417 0.81690 0.71592 1.90672 1.66857 1.37180 1.45832 1.21082 0.84895 0.90681 0.97241 1.45463 1.51929 1.29951 1.05734 1.18227 0.78606 0.84687 0.82446 1.90830 1.43112 1.38056 1.71241 1.20859 0.99724 0.94412 0.92138 1.67487 1.07584 1.01044 1.40417 1.23041 0.96268 0.95359 0.91003 1.21792 0.98681 0.98194 0.95512 1.25183 0.95629 0.98383 0.98859 1.86512 1.36802 1.77514 1.35076 0.93746 0.83748 0.77807 0.76640 1.21709 0.92872 0.91351 1.01930 1.22255 0.98183 0.99566 0.93489 1.23471 1.02756 0.91899 0.97172 1.23517 0.90740 0.91343 0.93630 0.88577 1.87915 1.33675 1.60089 1.48673 1.23028 1.02775 0.93992 0.87710 1.23848 1.04472 0.96335 0.91343 0.92695 0.90957 0.85072 0.72880 0.79433 0.86362 0.75188 1.22516 1.20250 0.82229 0.83546 0.91041 0.86976 0.92544 0.93653 0.88215 0.84297 0.87767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.04 10.56 113.37 1.20 1.24 16 2 O -0.36 -2.31 10.42 -51.38 -0.54 -2.84 16 3 C 0.48 4.12 6.44 71.24 0.46 4.58 16 4 O -0.52 -7.03 15.11 21.96 0.33 -6.70 16 5 C 0.15 0.56 1.11 3.39 0.00 0.57 16 6 N -0.68 -1.59 5.12 -426.44 -2.18 -3.77 16 7 C 0.57 4.12 7.46 86.88 0.65 4.77 16 8 O -0.56 -7.78 15.36 -3.75 -0.06 -7.83 16 9 C 0.07 0.25 6.75 41.91 0.28 0.53 16 10 N -0.45 -0.18 9.55 -184.91 -1.77 -1.94 16 11 C 0.10 -0.39 9.84 84.82 0.83 0.45 16 12 C -0.14 0.56 5.40 -19.70 -0.11 0.45 16 13 C -0.07 0.40 2.83 71.23 0.20 0.60 16 14 O -0.55 2.52 12.78 -148.98 -1.90 0.62 16 15 Si 0.78 -5.46 29.81 68.60 2.05 -3.42 16 16 C -0.05 0.10 9.76 22.45 0.22 0.32 16 17 C -0.11 -0.24 9.63 22.61 0.22 -0.02 16 18 C -0.11 -0.65 6.15 31.12 0.19 -0.46 16 19 C 0.07 0.16 3.92 31.12 0.12 0.28 16 20 H 0.10 0.31 7.35 -2.39 -0.02 0.29 16 21 O -0.39 -1.28 10.71 -148.98 -1.60 -2.87 16 22 C 0.02 -0.03 10.85 113.37 1.23 1.20 16 23 C -0.12 0.27 7.21 31.12 0.22 0.50 16 24 H 0.05 0.21 8.13 -2.39 -0.02 0.19 16 25 H 0.07 0.03 8.13 -2.39 -0.02 0.01 16 26 H 0.13 -0.57 8.14 -2.39 -0.02 -0.59 16 27 H 0.43 -1.03 8.04 -92.71 -0.75 -1.78 16 28 H 0.19 -1.76 4.89 -2.91 -0.01 -1.78 16 29 H 0.12 -0.59 7.96 -2.39 -0.02 -0.61 16 30 H 0.40 -4.94 8.70 -74.05 -0.64 -5.58 16 31 H -0.30 -0.37 7.11 99.48 0.71 0.34 16 32 H -0.28 0.80 7.11 99.48 0.71 1.51 16 33 H 0.16 -0.73 8.06 -2.91 -0.02 -0.76 16 34 H 0.15 0.40 7.64 -2.91 -0.02 0.37 16 35 H 0.07 0.76 7.64 -2.39 -0.02 0.75 16 36 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.06 -0.23 8.14 -2.39 -0.02 -0.25 16 38 H 0.04 -0.07 8.14 -2.39 -0.02 -0.09 16 39 H 0.10 -0.38 8.14 -2.39 -0.02 -0.40 16 40 H 0.14 -0.82 8.14 -2.39 -0.02 -0.84 16 41 H 0.10 -0.52 8.10 -2.38 -0.02 -0.53 16 Total: 0.00 -22.79 354.51 -0.20 -23.00 By element: Atomic # 1 Polarization: -8.97 SS G_CDS: -0.27 Total: -9.23 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: 5.73 Total: 15.00 kcal Atomic # 7 Polarization: -1.77 SS G_CDS: -3.95 Total: -5.71 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -3.76 Total: -19.63 kcal Atomic # 14 Polarization: -5.46 SS G_CDS: 2.05 Total: -3.42 kcal Total: -22.79 -0.20 -23.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14247462_13287726.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.746 kcal (2) G-P(sol) polarization free energy of solvation -22.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds