Wall clock time and date at job start Sun Mar 7 2021 00:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34224 * 117.00282 * 2 1 4 4 O 1.20824 * 119.99788 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00088 * 179.97438 * 3 2 1 6 6 N 1.46495 * 112.85016 * 335.31232 * 5 3 2 7 7 C 1.34776 * 119.99964 * 284.39630 * 6 5 3 8 8 O 1.21622 * 119.99936 * 5.03905 * 7 6 5 9 9 C 1.47269 * 119.99834 * 185.04166 * 7 6 5 10 10 C 1.36765 * 126.94265 * 0.02562 * 9 7 6 11 11 N 1.34656 * 108.39931 * 179.97438 * 10 9 7 12 12 C 1.46495 * 124.85582 * 179.97438 * 11 10 9 13 13 C 1.36452 * 110.29327 * 0.02562 * 11 10 9 14 14 C 1.50699 * 125.56867 * 180.02562 * 13 11 10 15 15 O 1.42900 * 109.47565 * 29.99670 * 14 13 11 16 16 Si 1.86301 * 109.47183 * 150.00071 * 14 13 11 17 17 C 1.34482 * 108.85693 * 359.70355 * 13 11 10 18 18 C 1.53780 * 113.61523 * 204.11248 * 5 3 2 19 19 C 1.53781 * 87.08144 * 270.80462 * 18 5 3 20 20 H 1.09004 * 113.61539 * 89.11925 * 19 18 5 21 21 O 1.42905 * 113.61287 * 220.01811 * 19 18 5 22 22 C 1.42898 * 113.99674 * 210.00014 * 21 19 18 23 23 C 1.53780 * 87.08216 * 334.56471 * 19 18 5 24 24 H 1.08999 * 109.47479 * 59.99727 * 1 2 3 25 25 H 1.09009 * 109.47292 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47210 * 299.99529 * 1 2 3 27 27 H 0.97007 * 119.99893 * 104.40210 * 6 5 3 28 28 H 1.07998 * 125.80255 * 359.97438 * 10 9 7 29 29 H 1.09007 * 109.46547 * 90.03092 * 12 11 10 30 30 H 1.08996 * 109.47570 * 210.02641 * 12 11 10 31 31 H 1.09000 * 109.47216 * 330.03446 * 12 11 10 32 32 H 1.09004 * 109.47234 * 269.99571 * 14 13 11 33 33 H 0.96698 * 113.99909 * 180.02562 * 15 14 13 34 34 H 1.48498 * 110.00121 * 178.68251 * 16 14 13 35 35 H 1.48504 * 109.99765 * 299.99431 * 16 14 13 36 36 H 1.08000 * 126.83676 * 180.26065 * 17 13 11 37 37 H 1.09000 * 113.61471 * 25.35053 * 18 5 3 38 38 H 1.08997 * 113.61406 * 156.25524 * 18 5 3 39 39 H 1.09006 * 109.46926 * 180.02562 * 22 21 19 40 40 H 1.09001 * 109.47566 * 299.99450 * 22 21 19 41 41 H 1.08995 * 109.47621 * 60.00530 * 22 21 19 42 42 H 1.08994 * 113.61562 * 270.88681 * 23 19 18 43 43 H 1.08998 * 113.68737 * 139.98987 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2092 0.0005 5 6 3.5663 1.2747 0.0006 6 7 4.1983 0.0797 0.5649 7 6 4.2022 -0.1145 1.8986 8 8 3.6027 0.6534 2.6267 9 6 4.9324 -1.2565 2.4743 10 6 5.6496 -2.2012 1.7933 11 7 6.1618 -3.0705 2.6851 12 6 6.9921 -4.2282 2.3438 13 6 5.7960 -2.7196 3.9519 14 6 6.1800 -3.4541 5.2105 15 8 7.4512 -4.0806 5.0274 16 14 6.2802 -2.2485 6.6272 17 6 5.0426 -1.6071 3.8943 18 6 4.1140 2.5914 0.5762 19 6 4.0337 3.1574 -0.8514 20 1 3.0729 3.6158 -1.0860 21 8 5.1450 3.9843 -1.2027 22 6 4.8299 5.0122 -2.1440 23 6 4.1628 1.7081 -1.3490 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 4.6141 -0.5718 -0.0213 28 1 5.7827 -2.2429 0.7224 29 1 8.0418 -3.9344 2.3416 30 1 6.8371 -5.0164 3.0806 31 1 6.7154 -4.5951 1.3555 32 1 5.4295 -4.2130 5.4317 33 1 7.7618 -4.5731 5.7994 34 1 6.6270 -2.9653 7.8806 35 1 7.3001 -1.2086 6.3380 36 1 4.6036 -1.0785 4.7276 37 1 3.4353 3.0772 1.2772 38 1 5.1319 2.5112 0.9575 39 1 5.7256 5.5952 -2.3588 40 1 4.4612 4.5608 -3.0652 41 1 4.0630 5.6646 -1.7267 42 1 5.1941 1.3864 -1.4940 43 1 3.5242 1.4795 -2.2022 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14247462_13287730.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:15:19 Heat of formation + Delta-G solvation = -101.546526 kcal Electronic energy + Delta-G solvation = -28541.647072 eV Core-core repulsion = 24363.578766 eV Total energy + Delta-G solvation = -4178.068306 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 325.145 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.64707 -42.25296 -40.44467 -39.58374 -37.84236 -37.77960 -37.08539 -34.40250 -33.60258 -31.49597 -29.34264 -28.00891 -27.51685 -27.11653 -26.41715 -25.66844 -23.87717 -22.87167 -21.05673 -20.79834 -20.31131 -19.35196 -18.49287 -18.43418 -18.02779 -17.59995 -17.36338 -16.95141 -16.88241 -16.75213 -16.03474 -15.79506 -15.61845 -15.43817 -15.20262 -14.99039 -14.55499 -14.44750 -14.40475 -13.86678 -13.70896 -13.57353 -13.39787 -13.21086 -13.16633 -13.10891 -13.02881 -12.68452 -12.53281 -12.36112 -12.11110 -12.01116 -11.90746 -11.75707 -11.03132 -10.78888 -10.59241 -10.36018 -9.57214 -9.14948 -4.89456 0.71404 0.86894 1.02275 1.48108 1.53454 1.57236 1.83617 1.95331 2.12406 2.52352 2.81047 3.08958 3.14675 3.21266 3.48438 3.56747 3.70792 3.88608 3.98975 4.02729 4.20826 4.24978 4.31323 4.39839 4.43054 4.47790 4.50234 4.52421 4.54742 4.57029 4.62819 4.69642 4.77684 4.79372 4.82110 4.87633 4.95576 4.99496 5.19741 5.26589 5.67860 6.01919 6.16125 6.25351 6.49569 6.52288 6.55820 7.26264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.352 6.352 3 C 0.476 3.524 4 O -0.525 6.525 5 C 0.156 3.844 6 N -0.694 5.694 7 C 0.596 3.404 8 O -0.580 6.580 9 C -0.258 4.258 10 C 0.073 3.927 11 N -0.426 5.426 12 C 0.072 3.928 13 C 0.014 3.986 14 C -0.043 4.043 15 O -0.553 6.553 16 Si 0.760 3.240 17 C -0.159 4.159 18 C -0.112 4.112 19 C 0.064 3.936 20 H 0.097 0.903 21 O -0.387 6.387 22 C 0.021 3.979 23 C -0.119 4.119 24 H 0.070 0.930 25 H 0.131 0.869 26 H 0.053 0.947 27 H 0.423 0.577 28 H 0.212 0.788 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.400 0.600 34 H -0.271 1.271 35 H -0.312 1.312 36 H 0.155 0.845 37 H 0.065 0.935 38 H 0.107 0.893 39 H 0.099 0.901 40 H 0.056 0.944 41 H 0.044 0.956 42 H 0.139 0.861 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.843 -7.765 -4.465 9.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.267 6.267 3 C 0.318 3.682 4 O -0.414 6.414 5 C 0.067 3.933 6 N -0.349 5.349 7 C 0.387 3.613 8 O -0.460 6.460 9 C -0.268 4.268 10 C -0.064 4.064 11 N -0.100 5.100 12 C -0.068 4.068 13 C -0.095 4.095 14 C -0.153 4.153 15 O -0.363 6.363 16 Si 0.664 3.336 17 C -0.183 4.183 18 C -0.150 4.150 19 C 0.006 3.994 20 H 0.115 0.885 21 O -0.306 6.306 22 C -0.074 4.074 23 C -0.157 4.157 24 H 0.089 0.911 25 H 0.149 0.851 26 H 0.071 0.929 27 H 0.262 0.738 28 H 0.228 0.772 29 H 0.094 0.906 30 H 0.112 0.888 31 H 0.124 0.876 32 H 0.121 0.879 33 H 0.252 0.748 34 H -0.197 1.197 35 H -0.240 1.240 36 H 0.172 0.828 37 H 0.084 0.916 38 H 0.125 0.875 39 H 0.117 0.883 40 H 0.075 0.925 41 H 0.063 0.937 42 H 0.157 0.843 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.040 -6.674 -3.881 7.985 hybrid contribution 0.288 -0.689 0.076 0.751 sum 2.328 -7.363 -3.805 8.609 Atomic orbital electron populations 1.23567 0.74750 1.05780 1.02459 1.86495 1.24867 1.32286 1.83084 1.23704 0.91604 0.81634 0.71236 1.90659 1.66981 1.37265 1.46451 1.20931 0.84585 0.87825 1.00006 1.45373 1.58901 1.23927 1.06679 1.17677 0.78472 0.83598 0.81516 1.90778 1.45921 1.48312 1.61004 1.20123 1.11436 1.00799 0.94418 1.22452 0.96829 0.90140 0.97006 1.43728 1.38495 1.22630 1.05139 1.22332 0.94603 0.86074 1.03808 1.19892 1.04791 0.99034 0.85775 1.24331 0.87762 1.02957 1.00248 1.86484 1.35418 1.70878 1.43544 0.93559 0.89054 0.77229 0.73718 1.21719 1.03842 0.96760 0.95962 1.23386 1.02428 0.91912 0.97316 1.23589 0.90736 0.90593 0.94507 0.88508 1.87910 1.33790 1.45763 1.63146 1.23015 1.02620 0.90020 0.91795 1.23802 1.04444 0.94583 0.92852 0.91121 0.85050 0.92859 0.73810 0.77160 0.90647 0.88774 0.87551 0.87860 0.74815 1.19676 1.23978 0.82793 0.91627 0.87509 0.88303 0.92517 0.93734 0.84337 0.87867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.05 10.56 113.37 1.20 1.25 16 2 O -0.35 -2.36 10.28 -51.36 -0.53 -2.89 16 3 C 0.48 4.33 6.85 71.24 0.49 4.82 16 4 O -0.53 -7.34 14.98 21.97 0.33 -7.01 16 5 C 0.16 0.64 1.13 3.39 0.00 0.65 16 6 N -0.69 -0.90 4.97 -427.30 -2.12 -3.03 16 7 C 0.60 5.04 7.47 86.62 0.65 5.69 16 8 O -0.58 -10.13 15.99 -4.10 -0.07 -10.20 16 9 C -0.26 -1.32 6.29 -19.04 -0.12 -1.44 16 10 C 0.07 -0.14 10.83 83.91 0.91 0.76 16 11 N -0.43 0.28 3.09 -533.26 -1.65 -1.36 16 12 C 0.07 -0.46 9.81 127.77 1.25 0.79 16 13 C 0.01 0.03 6.18 40.98 0.25 0.29 16 14 C -0.04 0.09 2.86 71.24 0.20 0.30 16 15 O -0.55 1.67 10.30 -148.98 -1.53 0.14 16 16 Si 0.76 -0.25 31.11 68.60 2.13 1.88 16 17 C -0.16 -0.93 9.49 23.62 0.22 -0.71 16 18 C -0.11 -0.85 5.80 31.12 0.18 -0.67 16 19 C 0.06 0.24 3.90 31.12 0.12 0.36 16 20 H 0.10 0.49 7.04 -2.38 -0.02 0.47 16 21 O -0.39 -1.85 10.71 -148.98 -1.60 -3.44 16 22 C 0.02 -0.01 10.85 113.37 1.23 1.22 16 23 C -0.12 0.24 7.25 31.12 0.23 0.46 16 24 H 0.07 0.04 8.13 -2.39 -0.02 0.02 16 25 H 0.13 -0.56 8.14 -2.38 -0.02 -0.58 16 26 H 0.05 0.24 8.13 -2.39 -0.02 0.22 16 27 H 0.42 -2.86 7.72 -92.70 -0.72 -3.58 16 28 H 0.21 -2.40 7.46 -2.91 -0.02 -2.42 16 29 H 0.07 -0.42 8.14 -2.38 -0.02 -0.44 16 30 H 0.09 -0.58 6.73 -2.39 -0.02 -0.59 16 31 H 0.11 -1.24 8.13 -2.39 -0.02 -1.25 16 32 H 0.10 -0.67 7.96 -2.38 -0.02 -0.69 16 33 H 0.40 -4.24 8.74 -74.06 -0.65 -4.89 16 34 H -0.27 -0.46 7.11 99.48 0.71 0.24 16 35 H -0.31 -3.04 7.11 99.48 0.71 -2.33 16 36 H 0.15 0.77 6.88 -2.91 -0.02 0.75 16 37 H 0.06 0.86 7.86 -2.39 -0.02 0.84 16 38 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.10 -0.26 8.14 -2.38 -0.02 -0.28 16 40 H 0.06 -0.17 8.14 -2.39 -0.02 -0.19 16 41 H 0.04 -0.01 8.14 -2.39 -0.02 -0.03 16 42 H 0.14 -0.84 8.14 -2.39 -0.02 -0.86 16 43 H 0.10 -0.51 8.10 -2.39 -0.02 -0.53 16 Total: 0.00 -28.99 364.77 1.51 -27.48 By element: Atomic # 1 Polarization: -15.06 SS G_CDS: -0.28 Total: -15.34 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: 6.82 Total: 13.77 kcal Atomic # 7 Polarization: -0.62 SS G_CDS: -3.77 Total: -4.39 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -3.39 Total: -23.40 kcal Atomic # 14 Polarization: -0.25 SS G_CDS: 2.13 Total: 1.88 kcal Total: -28.99 1.51 -27.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14247462_13287730.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.069 kcal (2) G-P(sol) polarization free energy of solvation -28.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds