Wall clock time and date at job start Sun Mar 7 2021 00:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34226 * 117.00193 * 2 1 4 4 O 1.20822 * 119.99778 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00180 * 180.02562 * 3 2 1 6 6 N 1.46507 * 112.84999 * 336.19406 * 5 3 2 7 7 C 1.34773 * 119.99812 * 50.33196 * 6 5 3 8 8 O 1.21280 * 120.00249 * 0.02562 * 7 6 5 9 9 C 1.50698 * 119.99820 * 179.97438 * 7 6 5 10 10 C 1.50702 * 109.47013 * 180.02562 * 9 7 6 11 11 C 1.38284 * 119.93037 * 269.72110 * 10 9 7 12 12 C 1.38127 * 120.06205 * 179.76571 * 11 10 9 13 13 C 1.38820 * 119.93617 * 0.48875 * 12 11 10 14 14 N 1.40195 * 120.06836 * 179.74423 * 13 12 11 15 15 C 1.36568 * 125.67260 * 236.09955 * 14 13 12 16 16 C 1.34848 * 108.20233 * 179.82907 * 15 14 13 17 17 C 1.40939 * 107.46898 * 0.42234 * 16 15 14 18 18 C 1.34855 * 107.46476 * 359.73659 * 17 16 15 19 19 C 1.50703 * 125.89749 * 179.97438 * 18 17 16 20 20 O 1.42891 * 109.47003 * 218.20337 * 19 18 17 21 21 Si 1.86297 * 109.47171 * 338.20543 * 19 18 17 22 22 C 1.38830 * 119.86927 * 359.76924 * 13 12 11 23 23 C 1.38126 * 119.93268 * 359.97438 * 22 13 12 24 24 C 1.53784 * 113.61350 * 204.99919 * 5 3 2 25 25 C 1.53774 * 87.07942 * 270.88129 * 24 5 3 26 26 H 1.08998 * 113.61379 * 89.20262 * 25 24 5 27 27 O 1.42906 * 113.61331 * 220.01627 * 25 24 5 28 28 C 1.42897 * 114.00105 * 210.00294 * 27 25 24 29 29 C 1.53777 * 87.08439 * 334.56723 * 25 24 5 30 30 H 1.08997 * 109.47105 * 60.00096 * 1 2 3 31 31 H 1.09003 * 109.46809 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47277 * 299.99496 * 1 2 3 33 33 H 0.96999 * 119.99923 * 230.33866 * 6 5 3 34 34 H 1.09001 * 109.47573 * 299.99901 * 9 7 6 35 35 H 1.08998 * 109.47094 * 60.00503 * 9 7 6 36 36 H 1.08001 * 119.96862 * 0.02617 * 11 10 9 37 37 H 1.08002 * 120.02751 * 180.25926 * 12 11 10 38 38 H 1.08006 * 125.89735 * 359.97438 * 15 14 13 39 39 H 1.07998 * 126.26319 * 180.16160 * 16 15 14 40 40 H 1.07999 * 126.26797 * 179.75734 * 17 16 15 41 41 H 1.09005 * 109.46582 * 98.20453 * 19 18 17 42 42 H 0.96705 * 114.00116 * 65.22871 * 20 19 18 43 43 H 1.48504 * 110.00357 * 58.67960 * 21 19 18 44 44 H 1.48503 * 110.00006 * 179.97438 * 21 19 18 45 45 H 1.07992 * 120.03636 * 179.97438 * 22 13 12 46 46 H 1.07996 * 119.96761 * 179.97438 * 23 22 13 47 47 H 1.08997 * 113.61097 * 25.43184 * 24 5 3 48 48 H 1.09004 * 113.61513 * 156.33043 * 24 5 3 49 49 H 1.08998 * 109.47254 * 60.00123 * 28 27 25 50 50 H 1.08995 * 109.47491 * 180.02562 * 28 27 25 51 51 H 1.09002 * 109.47201 * 299.99970 * 28 27 25 52 52 H 1.09004 * 113.61218 * 270.88484 * 29 25 24 53 53 H 1.09002 * 113.61759 * 139.98163 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2092 0.0005 5 6 3.5663 1.2748 -0.0006 6 7 4.1993 0.0709 0.5439 7 6 3.8373 -1.1451 0.0892 8 8 2.9880 -1.2427 -0.7710 9 6 4.4888 -2.3833 0.6488 10 6 3.9112 -3.6023 -0.0232 11 6 2.8027 -4.2279 0.5171 12 6 2.2681 -5.3424 -0.0992 13 6 2.8508 -5.8404 -1.2566 14 7 2.3137 -6.9747 -1.8815 15 6 2.9935 -8.1246 -2.1653 16 6 2.1404 -8.9822 -2.7612 17 6 0.8911 -8.3371 -2.8583 18 6 1.0251 -7.1111 -2.3128 19 6 -0.0595 -6.0710 -2.1994 20 8 0.4959 -4.7759 -2.4362 21 14 -1.3866 -6.4176 -3.4601 22 6 3.9669 -5.2134 -1.7938 23 6 4.4938 -4.0960 -1.1759 24 6 4.1149 2.5822 0.5949 25 6 4.0303 3.1714 -0.8229 26 1 3.0692 3.6342 -1.0469 27 8 5.1402 4.0046 -1.1637 28 6 4.8220 5.0476 -2.0873 29 6 4.1588 1.7305 -1.3445 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 4.8788 0.1491 1.2316 34 1 5.5627 -2.3430 0.4664 35 1 4.3042 -2.4378 1.7217 36 1 2.3519 -3.8422 1.4196 37 1 1.3997 -5.8281 0.3210 38 1 4.0342 -8.3152 -1.9477 39 1 2.3731 -9.9791 -3.1052 40 1 -0.0090 -8.7493 -3.2901 41 1 -0.4912 -6.1039 -1.1990 42 1 0.8269 -4.6484 -3.3358 43 1 -1.9502 -7.7745 -3.2444 44 1 -2.4625 -5.3991 -3.3581 45 1 4.4226 -5.5988 -2.6938 46 1 5.3623 -3.6081 -1.5931 47 1 3.4379 3.0560 1.3057 48 1 5.1339 2.4964 0.9722 49 1 4.0558 5.6925 -1.6572 50 1 5.7167 5.6345 -2.2950 51 1 4.4510 4.6111 -3.0146 52 1 5.1900 1.4119 -1.4976 53 1 3.5173 1.5167 -2.1994 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14247462_13287746.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:15:25 Heat of formation + Delta-G solvation = -57.097083 kcal Electronic energy + Delta-G solvation = -39195.288452 eV Core-core repulsion = 34195.167819 eV Total energy + Delta-G solvation = -5000.120633 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 401.176 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -42.67621 -42.53981 -40.70900 -40.10306 -39.38463 -37.78174 -37.69691 -37.01969 -34.79988 -34.17649 -32.10566 -31.73996 -31.04017 -29.32518 -28.11479 -27.61124 -27.12072 -26.05568 -25.79042 -23.91497 -23.69196 -22.93390 -21.46433 -21.31521 -20.76260 -20.58544 -19.25362 -19.21242 -18.29152 -17.77409 -17.66277 -17.43316 -17.23912 -17.02111 -16.97773 -16.54649 -16.19517 -16.05152 -15.77444 -15.54531 -15.38197 -15.21160 -15.15233 -14.69955 -14.58947 -14.49117 -14.44396 -14.35204 -14.20969 -13.91966 -13.73292 -13.59614 -13.36634 -13.31744 -13.22133 -13.07463 -12.87175 -12.65204 -12.44574 -12.22799 -12.18677 -12.12323 -12.01219 -11.93819 -11.83296 -11.62517 -10.81358 -10.71699 -10.60596 -10.20781 -10.19113 -9.94226 -9.20238 -9.08310 -4.99669 0.05632 0.40076 0.86790 1.07410 1.33181 1.57156 1.61447 1.78669 1.83972 1.97523 1.98288 2.10079 2.69963 2.85486 3.01516 3.23154 3.38855 3.48898 3.59180 3.66566 3.70641 3.80700 3.92664 3.96078 4.12534 4.13623 4.15795 4.19884 4.28573 4.37406 4.40291 4.41953 4.48453 4.51229 4.51308 4.55203 4.55929 4.58618 4.66644 4.67822 4.68754 4.73687 4.80672 4.85673 4.88995 5.01358 5.21414 5.23762 5.25733 5.27614 5.31891 5.38924 5.56064 5.84364 5.93626 6.12792 6.18470 6.52114 6.55240 6.56474 6.60700 7.35313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.317 6.317 3 C 0.470 3.530 4 O -0.532 6.532 5 C 0.158 3.842 6 N -0.705 5.705 7 C 0.506 3.494 8 O -0.524 6.524 9 C -0.094 4.094 10 C -0.062 4.062 11 C -0.095 4.095 12 C -0.110 4.110 13 C 0.118 3.882 14 N -0.395 5.395 15 C -0.014 4.014 16 C -0.201 4.201 17 C -0.205 4.205 18 C -0.019 4.019 19 C -0.054 4.054 20 O -0.546 6.546 21 Si 0.802 3.198 22 C -0.120 4.120 23 C -0.093 4.093 24 C -0.106 4.106 25 C 0.062 3.938 26 H 0.089 0.911 27 O -0.384 6.384 28 C 0.022 3.978 29 C -0.137 4.137 30 H 0.055 0.945 31 H 0.110 0.890 32 H 0.063 0.937 33 H 0.426 0.574 34 H 0.137 0.863 35 H 0.128 0.872 36 H 0.134 0.866 37 H 0.109 0.891 38 H 0.180 0.820 39 H 0.155 0.845 40 H 0.149 0.851 41 H 0.100 0.900 42 H 0.386 0.614 43 H -0.278 1.278 44 H -0.292 1.292 45 H 0.134 0.866 46 H 0.148 0.852 47 H 0.089 0.911 48 H 0.140 0.860 49 H 0.047 0.953 50 H 0.101 0.899 51 H 0.045 0.955 52 H 0.125 0.875 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.501 0.609 1.098 6.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.231 6.231 3 C 0.312 3.688 4 O -0.422 6.422 5 C 0.068 3.932 6 N -0.362 5.362 7 C 0.294 3.706 8 O -0.398 6.398 9 C -0.133 4.133 10 C -0.062 4.062 11 C -0.114 4.114 12 C -0.129 4.129 13 C 0.028 3.972 14 N -0.068 5.068 15 C -0.142 4.142 16 C -0.225 4.225 17 C -0.229 4.229 18 C -0.129 4.129 19 C -0.163 4.163 20 O -0.352 6.352 21 Si 0.705 3.295 22 C -0.139 4.139 23 C -0.111 4.111 24 C -0.143 4.143 25 C 0.003 3.997 26 H 0.107 0.893 27 O -0.302 6.302 28 C -0.074 4.074 29 C -0.176 4.176 30 H 0.073 0.927 31 H 0.129 0.871 32 H 0.082 0.918 33 H 0.266 0.734 34 H 0.155 0.845 35 H 0.146 0.854 36 H 0.152 0.848 37 H 0.127 0.873 38 H 0.197 0.803 39 H 0.172 0.828 40 H 0.167 0.833 41 H 0.117 0.883 42 H 0.235 0.765 43 H -0.205 1.205 44 H -0.219 1.219 45 H 0.152 0.848 46 H 0.165 0.835 47 H 0.108 0.892 48 H 0.158 0.842 49 H 0.066 0.934 50 H 0.120 0.880 51 H 0.064 0.936 52 H 0.143 0.857 53 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.960 0.925 1.201 5.186 hybrid contribution -0.575 -0.093 0.652 0.874 sum 4.385 0.832 1.853 4.832 Atomic orbital electron populations 1.23380 0.76875 1.04432 1.01945 1.86997 1.23012 1.31096 1.82013 1.23732 0.91665 0.81848 0.71506 1.90664 1.67079 1.37331 1.47122 1.20832 0.84839 0.88002 0.99511 1.45743 1.43374 1.03271 1.43818 1.21048 0.82239 0.84893 0.82458 1.90814 1.31221 1.86447 1.31339 1.20722 1.02762 0.87427 1.02422 1.19520 0.95370 0.95750 0.95582 1.20986 0.95540 0.94435 1.00392 1.20902 0.99881 0.97845 0.94294 1.17722 0.96619 0.88903 0.93931 1.41563 1.08971 1.11433 1.44789 1.22357 0.99619 0.85881 1.06311 1.21174 0.93309 1.01109 1.06907 1.20972 0.99838 0.94327 1.07811 1.21212 0.86404 0.98643 1.06655 1.24968 1.00044 0.82611 1.08684 1.86533 1.81843 1.29881 1.36894 0.93044 0.73914 0.76586 0.85947 1.21135 0.96070 0.96328 1.00360 1.21098 1.00446 0.95035 0.94522 1.23504 1.04356 0.89536 0.96932 1.23546 0.90526 0.89808 0.95779 0.89270 1.87881 1.33772 1.44438 1.64119 1.22990 1.02748 0.89706 0.91952 1.23882 1.03247 0.95615 0.94831 0.92656 0.87122 0.91839 0.73419 0.84516 0.85434 0.84777 0.87263 0.80261 0.82767 0.83333 0.88304 0.76528 1.20462 1.21931 0.84808 0.83470 0.89203 0.84185 0.93391 0.88011 0.93619 0.85725 0.91755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.56 113.37 1.20 1.35 16 2 O -0.32 -2.78 6.35 -43.41 -0.28 -3.05 16 3 C 0.47 3.59 6.96 71.23 0.50 4.08 16 4 O -0.53 -6.29 14.97 21.98 0.33 -5.96 16 5 C 0.16 0.04 1.22 3.38 0.00 0.05 16 6 N -0.70 3.56 5.32 -423.92 -2.26 1.30 16 7 C 0.51 -0.53 7.15 87.66 0.63 0.09 16 8 O -0.52 -4.20 12.61 21.04 0.27 -3.94 16 9 C -0.09 0.68 5.83 29.10 0.17 0.85 16 10 C -0.06 0.05 4.37 -19.84 -0.09 -0.04 16 11 C -0.09 -0.20 9.69 22.25 0.22 0.01 16 12 C -0.11 -0.59 8.62 22.38 0.19 -0.40 16 13 C 0.12 0.60 4.66 38.08 0.18 0.77 16 14 N -0.39 -2.29 2.84 -333.41 -0.95 -3.23 16 15 C -0.01 -0.06 11.21 83.18 0.93 0.88 16 16 C -0.20 -0.85 10.86 22.15 0.24 -0.61 16 17 C -0.20 -1.04 9.39 22.15 0.21 -0.83 16 18 C -0.02 -0.11 6.12 41.05 0.25 0.14 16 19 C -0.05 -0.21 2.49 71.24 0.18 -0.03 16 20 O -0.55 -2.82 11.01 -148.98 -1.64 -4.46 16 21 Si 0.80 0.55 30.94 68.60 2.12 2.67 16 22 C -0.12 -0.25 9.77 22.38 0.22 -0.03 16 23 C -0.09 0.05 9.69 22.25 0.22 0.26 16 24 C -0.11 0.28 6.96 31.12 0.22 0.50 16 25 C 0.06 0.08 3.90 31.12 0.12 0.20 16 26 H 0.09 0.36 7.01 -2.39 -0.02 0.35 16 27 O -0.38 -0.83 10.71 -148.98 -1.60 -2.43 16 28 C 0.02 -0.03 10.85 113.37 1.23 1.20 16 29 C -0.14 -0.11 7.28 31.12 0.23 0.12 16 30 H 0.05 0.36 8.13 -2.39 -0.02 0.34 16 31 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.06 0.27 8.13 -2.39 -0.02 0.25 16 33 H 0.43 -5.36 8.64 -92.71 -0.80 -6.16 16 34 H 0.14 -1.80 8.08 -2.39 -0.02 -1.82 16 35 H 0.13 -1.47 8.08 -2.39 -0.02 -1.49 16 36 H 0.13 -0.08 8.06 -2.91 -0.02 -0.11 16 37 H 0.11 0.73 8.06 -2.91 -0.02 0.70 16 38 H 0.18 -0.09 8.06 -2.91 -0.02 -0.12 16 39 H 0.15 0.09 8.06 -2.91 -0.02 0.07 16 40 H 0.15 0.40 6.43 -2.91 -0.02 0.38 16 41 H 0.10 0.53 7.96 -2.38 -0.02 0.51 16 42 H 0.39 -0.18 8.60 -74.05 -0.64 -0.81 16 43 H -0.28 -1.28 6.86 99.48 0.68 -0.60 16 44 H -0.29 -1.99 7.11 99.48 0.71 -1.28 16 45 H 0.13 0.00 8.06 -2.91 -0.02 -0.03 16 46 H 0.15 -0.74 8.06 -2.91 -0.02 -0.77 16 47 H 0.09 -0.13 7.88 -2.39 -0.02 -0.14 16 48 H 0.14 -1.12 8.13 -2.39 -0.02 -1.14 16 49 H 0.05 -0.08 8.14 -2.39 -0.02 -0.10 16 50 H 0.10 -0.41 8.14 -2.39 -0.02 -0.42 16 51 H 0.05 -0.08 8.14 -2.39 -0.02 -0.10 16 52 H 0.12 -0.23 8.14 -2.38 -0.02 -0.25 16 53 H 0.06 0.28 8.09 -2.39 -0.02 0.26 16 Total: 0.00 -25.25 440.56 2.56 -22.69 By element: Atomic # 1 Polarization: -11.69 SS G_CDS: -0.48 Total: -12.17 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: 7.03 Total: 8.57 kcal Atomic # 7 Polarization: 1.27 SS G_CDS: -3.20 Total: -1.93 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -2.92 Total: -19.83 kcal Atomic # 14 Polarization: 0.55 SS G_CDS: 2.12 Total: 2.67 kcal Total: -25.25 2.56 -22.69 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14247462_13287746.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.405 kcal (2) G-P(sol) polarization free energy of solvation -25.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds