Wall clock time and date at job start Sun Mar 7 2021 00:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34232 * 117.00333 * 2 1 4 4 O 1.20827 * 119.99705 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00187 * 180.02562 * 3 2 1 6 6 N 1.46498 * 112.85232 * 334.67087 * 5 3 2 7 7 C 1.34777 * 119.99828 * 50.05351 * 6 5 3 8 8 O 1.21553 * 119.99924 * 0.28083 * 7 6 5 9 9 C 1.47842 * 120.00010 * 180.27787 * 7 6 5 10 10 C 1.39520 * 120.55768 * 0.02562 * 9 7 6 11 11 N 1.31693 * 120.56418 * 180.02562 * 10 9 7 12 12 C 1.31932 * 121.88314 * 359.97261 * 11 10 9 13 13 C 1.38352 * 121.07491 * 0.02562 * 12 11 10 14 14 C 1.50700 * 120.34455 * 179.97438 * 13 12 11 15 15 O 1.42901 * 109.47087 * 244.99478 * 14 13 12 16 16 Si 1.86299 * 109.47485 * 4.99981 * 14 13 12 17 17 C 1.38350 * 119.30602 * 359.73824 * 13 12 11 18 18 C 1.53780 * 113.61426 * 203.47139 * 5 3 2 19 19 C 1.53777 * 87.08398 * 270.80095 * 18 5 3 20 20 H 1.09003 * 113.61213 * 89.11314 * 19 18 5 21 21 O 1.42896 * 113.61431 * 219.93483 * 19 18 5 22 22 C 1.42904 * 114.00008 * 210.00168 * 21 19 18 23 23 C 1.53785 * 113.61535 * 105.86737 * 5 3 2 24 24 H 1.08997 * 109.47520 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.46925 * 299.99816 * 1 2 3 26 26 H 1.08999 * 109.47311 * 59.99152 * 1 2 3 27 27 H 0.97001 * 120.00384 * 230.33798 * 6 5 3 28 28 H 1.08000 * 119.71607 * 0.02562 * 10 9 7 29 29 H 1.08000 * 119.45951 * 180.02562 * 12 11 10 30 30 H 1.09004 * 109.46966 * 124.99963 * 14 13 12 31 31 H 0.96707 * 113.99493 * 60.00891 * 15 14 13 32 32 H 1.48491 * 110.00421 * 179.97438 * 16 14 13 33 33 H 1.48510 * 109.99750 * 301.32049 * 16 14 13 34 34 H 1.08007 * 120.86058 * 180.25453 * 17 13 12 35 35 H 1.09003 * 113.61601 * 25.35512 * 18 5 3 36 36 H 1.09005 * 113.61588 * 156.25058 * 18 5 3 37 37 H 1.08991 * 109.47126 * 60.00048 * 22 21 19 38 38 H 1.09001 * 109.46885 * 180.02562 * 22 21 19 39 39 H 1.09000 * 109.46638 * 299.99670 * 22 21 19 40 40 H 1.08996 * 113.61529 * 203.75293 * 23 5 3 41 41 H 1.09006 * 113.60936 * 334.65168 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 7 4.1986 0.0859 0.5765 7 6 3.8332 -1.1420 0.1577 8 8 2.9828 -1.2627 -0.7024 9 6 4.4668 -2.3420 0.7444 10 6 5.4438 -2.2169 1.7326 11 7 6.0086 -3.2857 2.2550 12 6 5.6798 -4.5049 1.8727 13 6 4.7200 -4.7133 0.8983 14 6 4.3576 -6.1131 0.4737 15 8 4.7310 -6.3084 -0.8918 16 14 5.2599 -7.3406 1.5459 17 6 4.0930 -3.6234 0.3213 18 6 4.1141 2.5976 0.5607 19 6 4.0336 3.1482 -0.8729 20 1 3.0728 3.6039 -1.1123 21 8 5.1439 3.9728 -1.2325 22 6 4.8278 4.9902 -2.1849 23 6 4.1609 1.6920 -1.3561 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5140 -0.8899 27 1 4.8772 0.1822 1.2629 28 1 5.7393 -1.2351 2.0720 29 1 6.1679 -5.3540 2.3278 30 1 3.2826 -6.2584 0.5807 31 1 5.6763 -6.1946 -1.0612 32 1 4.9106 -8.7249 1.1377 33 1 6.7260 -7.1321 1.4333 34 1 3.3372 -3.7572 -0.4386 35 1 3.4356 3.0909 1.2567 36 1 5.1322 2.5216 0.9427 37 1 4.0598 5.6459 -1.7748 38 1 5.7228 5.5720 -2.4056 39 1 4.4601 4.5284 -3.1012 40 1 5.1916 1.3679 -1.4992 41 1 3.5199 1.4553 -2.2054 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14247462_13287814.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:15:31 Heat of formation + Delta-G solvation = -102.683936 kcal Electronic energy + Delta-G solvation = -28068.613296 eV Core-core repulsion = 23917.807147 eV Total energy + Delta-G solvation = -4150.806149 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 323.129 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.58461 -41.69973 -40.20976 -39.72184 -38.10495 -37.70406 -36.93973 -34.60591 -33.79719 -32.85615 -29.19362 -27.94523 -27.36293 -27.23825 -26.52695 -25.13821 -23.92609 -23.14095 -21.55020 -20.72199 -19.49300 -19.14823 -18.20569 -17.97862 -17.76097 -17.62529 -17.56581 -17.15679 -16.88307 -16.51304 -16.17135 -15.90098 -15.77589 -15.41351 -15.11597 -14.72031 -14.57979 -14.43974 -14.35120 -14.23700 -13.69514 -13.64690 -13.49148 -13.27897 -12.99005 -12.82913 -12.59673 -12.29945 -12.14521 -12.09728 -11.68217 -11.55761 -11.22751 -11.02167 -10.75293 -10.63726 -10.53037 -10.41589 -10.30011 -5.09816 -0.59479 -0.04360 0.99797 1.09782 1.44913 1.62177 1.72802 1.74393 1.85346 2.60753 2.75166 2.87052 3.04759 3.19242 3.21208 3.35501 3.46051 3.57431 3.62658 3.68525 3.72090 3.99553 4.07415 4.17222 4.24840 4.32434 4.33902 4.41889 4.42888 4.44228 4.45826 4.61151 4.67607 4.68854 4.75081 4.76589 4.81071 4.88335 5.08089 5.28126 5.42200 6.10698 6.19917 6.23743 6.60272 6.71628 7.04033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.311 6.311 3 C 0.477 3.523 4 O -0.503 6.503 5 C 0.156 3.844 6 N -0.712 5.712 7 C 0.561 3.439 8 O -0.484 6.484 9 C -0.183 4.183 10 C 0.139 3.861 11 N -0.477 5.477 12 C 0.126 3.874 13 C -0.177 4.177 14 C -0.071 4.071 15 O -0.525 6.525 16 Si 0.686 3.314 17 C 0.013 3.987 18 C -0.118 4.118 19 C 0.067 3.933 20 H 0.105 0.895 21 O -0.372 6.372 22 C 0.028 3.972 23 C -0.144 4.144 24 H 0.101 0.899 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.408 0.592 28 H 0.161 0.839 29 H 0.163 0.837 30 H 0.124 0.876 31 H 0.377 0.623 32 H -0.251 1.251 33 H -0.255 1.255 34 H 0.152 0.848 35 H 0.096 0.904 36 H 0.115 0.885 37 H 0.046 0.954 38 H 0.089 0.911 39 H 0.044 0.956 40 H 0.113 0.887 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.426 -0.051 2.869 3.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.225 6.225 3 C 0.318 3.682 4 O -0.390 6.390 5 C 0.067 3.933 6 N -0.368 5.368 7 C 0.347 3.653 8 O -0.357 6.357 9 C -0.189 4.189 10 C -0.020 4.020 11 N -0.185 5.185 12 C -0.030 4.030 13 C -0.180 4.180 14 C -0.181 4.181 15 O -0.331 6.331 16 Si 0.586 3.414 17 C -0.013 4.013 18 C -0.155 4.155 19 C 0.008 3.992 20 H 0.123 0.877 21 O -0.290 6.290 22 C -0.069 4.069 23 C -0.182 4.182 24 H 0.120 0.880 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.245 0.755 28 H 0.178 0.822 29 H 0.180 0.820 30 H 0.142 0.858 31 H 0.225 0.775 32 H -0.175 1.175 33 H -0.180 1.180 34 H 0.170 0.830 35 H 0.115 0.885 36 H 0.134 0.866 37 H 0.065 0.935 38 H 0.108 0.892 39 H 0.062 0.938 40 H 0.131 0.869 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.308 -0.561 2.916 3.245 hybrid contribution -0.242 0.407 -1.433 1.509 sum 1.066 -0.154 1.483 1.833 Atomic orbital electron populations 1.23339 0.77135 1.03856 1.02241 1.86997 1.22553 1.30748 1.82246 1.23020 0.90248 0.82402 0.72509 1.90695 1.66066 1.36596 1.45673 1.21018 0.86699 0.86609 0.98950 1.45714 1.43266 1.04202 1.43570 1.18015 0.82096 0.82529 0.82700 1.90864 1.29451 1.85643 1.29712 1.20969 1.01658 0.94585 1.01644 1.23048 0.90297 0.98088 0.90563 1.67740 1.25781 0.98594 1.26348 1.22955 0.92591 0.95169 0.92264 1.21352 0.99470 0.97460 0.99692 1.24984 1.07373 0.96655 0.89097 1.86652 1.30001 1.92476 1.24010 0.95019 0.79781 0.78546 0.88008 1.21622 0.95132 0.89650 0.94919 1.23516 1.03305 0.90638 0.98084 1.23577 0.91276 0.89910 0.94403 0.87729 1.87916 1.33460 1.45917 1.61686 1.22867 1.02042 0.90366 0.91581 1.23971 1.03178 0.95937 0.95157 0.88037 0.92119 0.91904 0.75497 0.82192 0.82028 0.85810 0.77494 1.17547 1.17959 0.82988 0.88532 0.86650 0.93547 0.89224 0.93754 0.86854 0.89794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.03 10.56 101.05 1.07 1.10 16 2 O -0.31 -1.08 6.29 -47.62 -0.30 -1.38 16 3 C 0.48 1.44 6.98 36.00 0.25 1.69 16 4 O -0.50 -2.33 14.99 -18.75 -0.28 -2.61 16 5 C 0.16 0.04 1.22 -132.16 -0.16 -0.12 16 6 N -0.71 0.86 5.27 -48.86 -0.26 0.60 16 7 C 0.56 0.60 7.13 -12.33 -0.09 0.51 16 8 O -0.48 -2.02 12.93 -19.93 -0.26 -2.28 16 9 C -0.18 0.01 5.89 -104.82 -0.62 -0.61 16 10 C 0.14 -0.16 10.71 -17.13 -0.18 -0.35 16 11 N -0.48 -0.11 10.35 -12.91 -0.13 -0.24 16 12 C 0.13 -0.12 9.84 -17.47 -0.17 -0.29 16 13 C -0.18 0.17 5.35 -104.54 -0.56 -0.39 16 14 C -0.07 0.11 2.81 36.01 0.10 0.21 16 15 O -0.53 -0.06 12.84 -35.23 -0.45 -0.51 16 16 Si 0.69 -1.67 29.91 -169.99 -5.08 -6.76 16 17 C 0.01 0.00 9.38 -38.87 -0.36 -0.36 16 18 C -0.12 0.14 6.96 -25.92 -0.18 -0.04 16 19 C 0.07 0.02 3.90 -25.83 -0.10 -0.08 16 20 H 0.10 0.09 7.05 -51.93 -0.37 -0.27 16 21 O -0.37 -0.41 10.72 -35.23 -0.38 -0.78 16 22 C 0.03 -0.02 10.85 101.05 1.10 1.07 16 23 C -0.14 -0.04 7.30 -25.83 -0.19 -0.22 16 24 H 0.10 -0.06 8.14 -51.93 -0.42 -0.48 16 25 H 0.06 0.04 8.13 -51.92 -0.42 -0.38 16 26 H 0.06 0.08 8.13 -51.93 -0.42 -0.34 16 27 H 0.41 -1.74 6.71 -40.82 -0.27 -2.01 16 28 H 0.16 -0.70 6.42 -52.49 -0.34 -1.04 16 29 H 0.16 -0.46 4.85 -52.49 -0.25 -0.71 16 30 H 0.12 -0.29 7.96 -51.93 -0.41 -0.70 16 31 H 0.38 -1.04 8.70 45.56 0.40 -0.64 16 32 H -0.25 -0.25 7.11 56.52 0.40 0.15 16 33 H -0.25 0.19 7.01 56.52 0.40 0.59 16 34 H 0.15 0.12 7.74 -52.48 -0.41 -0.28 16 35 H 0.10 -0.09 7.85 -51.93 -0.41 -0.50 16 36 H 0.12 -0.35 8.13 -51.93 -0.42 -0.77 16 37 H 0.05 -0.06 8.14 -51.93 -0.42 -0.48 16 38 H 0.09 -0.16 8.14 -51.93 -0.42 -0.59 16 39 H 0.04 -0.05 8.14 -51.93 -0.42 -0.48 16 40 H 0.11 -0.04 8.14 -51.93 -0.42 -0.46 16 41 H 0.08 0.10 8.09 -51.93 -0.42 -0.32 16 LS Contribution 346.76 15.07 5.23 5.23 Total: 0.00 -9.25 346.76 -7.08 -16.33 By element: Atomic # 1 Polarization: -4.66 SS G_CDS: -5.07 Total: -9.72 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -0.10 Total: 2.12 kcal Atomic # 7 Polarization: 0.75 SS G_CDS: -0.39 Total: 0.36 kcal Atomic # 8 Polarization: -5.90 SS G_CDS: -1.67 Total: -7.56 kcal Atomic # 14 Polarization: -1.67 SS G_CDS: -5.08 Total: -6.76 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -9.25 -7.08 -16.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14247462_13287814.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.350 kcal (2) G-P(sol) polarization free energy of solvation -9.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds