Wall clock time and date at job start Sun Mar 7 2021 00:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34232 * 117.00333 * 2 1 4 4 O 1.20827 * 119.99705 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00187 * 180.02562 * 3 2 1 6 6 N 1.46498 * 112.85232 * 334.67087 * 5 3 2 7 7 C 1.34777 * 119.99828 * 50.05351 * 6 5 3 8 8 O 1.21553 * 119.99924 * 0.28083 * 7 6 5 9 9 C 1.47842 * 120.00010 * 180.27787 * 7 6 5 10 10 C 1.39520 * 120.55768 * 0.02562 * 9 7 6 11 11 N 1.31693 * 120.56418 * 180.02562 * 10 9 7 12 12 C 1.31932 * 121.88314 * 359.97261 * 11 10 9 13 13 C 1.38352 * 121.07491 * 0.02562 * 12 11 10 14 14 C 1.50700 * 120.34455 * 179.97438 * 13 12 11 15 15 O 1.42901 * 109.47087 * 244.99478 * 14 13 12 16 16 Si 1.86299 * 109.47485 * 4.99981 * 14 13 12 17 17 C 1.38350 * 119.30602 * 359.73824 * 13 12 11 18 18 C 1.53780 * 113.61426 * 203.47139 * 5 3 2 19 19 C 1.53777 * 87.08398 * 270.80095 * 18 5 3 20 20 H 1.09003 * 113.61213 * 89.11314 * 19 18 5 21 21 O 1.42896 * 113.61431 * 219.93483 * 19 18 5 22 22 C 1.42904 * 114.00008 * 210.00168 * 21 19 18 23 23 C 1.53785 * 113.61535 * 105.86737 * 5 3 2 24 24 H 1.08997 * 109.47520 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.46925 * 299.99816 * 1 2 3 26 26 H 1.08999 * 109.47311 * 59.99152 * 1 2 3 27 27 H 0.97001 * 120.00384 * 230.33798 * 6 5 3 28 28 H 1.08000 * 119.71607 * 0.02562 * 10 9 7 29 29 H 1.08000 * 119.45951 * 180.02562 * 12 11 10 30 30 H 1.09004 * 109.46966 * 124.99963 * 14 13 12 31 31 H 0.96707 * 113.99493 * 60.00891 * 15 14 13 32 32 H 1.48491 * 110.00421 * 179.97438 * 16 14 13 33 33 H 1.48510 * 109.99750 * 301.32049 * 16 14 13 34 34 H 1.08007 * 120.86058 * 180.25453 * 17 13 12 35 35 H 1.09003 * 113.61601 * 25.35512 * 18 5 3 36 36 H 1.09005 * 113.61588 * 156.25058 * 18 5 3 37 37 H 1.08991 * 109.47126 * 60.00048 * 22 21 19 38 38 H 1.09001 * 109.46885 * 180.02562 * 22 21 19 39 39 H 1.09000 * 109.46638 * 299.99670 * 22 21 19 40 40 H 1.08996 * 113.61529 * 203.75293 * 23 5 3 41 41 H 1.09006 * 113.60936 * 334.65168 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 7 4.1986 0.0859 0.5765 7 6 3.8332 -1.1420 0.1577 8 8 2.9828 -1.2627 -0.7024 9 6 4.4668 -2.3420 0.7444 10 6 5.4438 -2.2169 1.7326 11 7 6.0086 -3.2857 2.2550 12 6 5.6798 -4.5049 1.8727 13 6 4.7200 -4.7133 0.8983 14 6 4.3576 -6.1131 0.4737 15 8 4.7310 -6.3084 -0.8918 16 14 5.2599 -7.3406 1.5459 17 6 4.0930 -3.6234 0.3213 18 6 4.1141 2.5976 0.5607 19 6 4.0336 3.1482 -0.8729 20 1 3.0728 3.6039 -1.1123 21 8 5.1439 3.9728 -1.2325 22 6 4.8278 4.9902 -2.1849 23 6 4.1609 1.6920 -1.3561 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5140 -0.8899 27 1 4.8772 0.1822 1.2629 28 1 5.7393 -1.2351 2.0720 29 1 6.1679 -5.3540 2.3278 30 1 3.2826 -6.2584 0.5807 31 1 5.6763 -6.1946 -1.0612 32 1 4.9106 -8.7249 1.1377 33 1 6.7260 -7.1321 1.4333 34 1 3.3372 -3.7572 -0.4386 35 1 3.4356 3.0909 1.2567 36 1 5.1322 2.5216 0.9427 37 1 4.0598 5.6459 -1.7748 38 1 5.7228 5.5720 -2.4056 39 1 4.4601 4.5284 -3.1012 40 1 5.1916 1.3679 -1.4992 41 1 3.5199 1.4553 -2.2054 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14247462_13287814.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:15:30 Heat of formation + Delta-G solvation = -104.817424 kcal Electronic energy + Delta-G solvation = -28068.705811 eV Core-core repulsion = 23917.807147 eV Total energy + Delta-G solvation = -4150.898664 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 323.129 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.66745 -41.67658 -40.32116 -39.77030 -38.05079 -37.81111 -37.08404 -34.63510 -33.75386 -32.79860 -29.29483 -27.92862 -27.27329 -27.21657 -26.51802 -25.17303 -23.87705 -23.18930 -21.55217 -20.82594 -19.52175 -19.15592 -18.23093 -17.94111 -17.80944 -17.69658 -17.56288 -17.25272 -16.89395 -16.45660 -16.16770 -15.88091 -15.79748 -15.43076 -15.16747 -14.72328 -14.57831 -14.45317 -14.38320 -14.18844 -13.75567 -13.60738 -13.43964 -13.29439 -13.09029 -12.77160 -12.55805 -12.28867 -12.19767 -12.07791 -11.86147 -11.69078 -11.27744 -11.01815 -10.67762 -10.63478 -10.51316 -10.41734 -10.24793 -4.92865 -0.53360 0.00969 0.82016 1.23913 1.53568 1.58585 1.71808 1.74283 1.96983 2.65815 2.78651 2.90599 3.14635 3.20204 3.35621 3.43368 3.46151 3.56268 3.68234 3.75020 3.77928 3.98056 4.13863 4.16886 4.22964 4.30747 4.40506 4.45063 4.50910 4.53682 4.56422 4.60580 4.65757 4.70969 4.76973 4.85639 4.87494 4.95761 5.10516 5.26234 5.36202 6.12221 6.29275 6.42880 6.52378 6.68788 7.04514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.323 6.323 3 C 0.471 3.529 4 O -0.525 6.525 5 C 0.156 3.844 6 N -0.696 5.696 7 C 0.561 3.439 8 O -0.521 6.521 9 C -0.190 4.190 10 C 0.145 3.855 11 N -0.494 5.494 12 C 0.127 3.873 13 C -0.173 4.173 14 C -0.080 4.080 15 O -0.547 6.547 16 Si 0.772 3.228 17 C 0.002 3.998 18 C -0.105 4.105 19 C 0.065 3.935 20 H 0.093 0.907 21 O -0.383 6.383 22 C 0.022 3.978 23 C -0.141 4.141 24 H 0.117 0.883 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.424 0.576 28 H 0.192 0.808 29 H 0.180 0.820 30 H 0.129 0.871 31 H 0.388 0.612 32 H -0.300 1.300 33 H -0.271 1.271 34 H 0.139 0.861 35 H 0.096 0.904 36 H 0.141 0.859 37 H 0.049 0.951 38 H 0.101 0.899 39 H 0.045 0.955 40 H 0.123 0.877 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.677 0.171 4.088 4.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.237 6.237 3 C 0.313 3.687 4 O -0.415 6.415 5 C 0.067 3.933 6 N -0.353 5.353 7 C 0.348 3.652 8 O -0.397 6.397 9 C -0.195 4.195 10 C -0.013 4.013 11 N -0.202 5.202 12 C -0.029 4.029 13 C -0.176 4.176 14 C -0.189 4.189 15 O -0.355 6.355 16 Si 0.676 3.324 17 C -0.025 4.025 18 C -0.142 4.142 19 C 0.006 3.994 20 H 0.111 0.889 21 O -0.302 6.302 22 C -0.074 4.074 23 C -0.180 4.180 24 H 0.135 0.865 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.265 0.735 28 H 0.209 0.791 29 H 0.197 0.803 30 H 0.147 0.853 31 H 0.237 0.763 32 H -0.228 1.228 33 H -0.197 1.197 34 H 0.157 0.843 35 H 0.114 0.886 36 H 0.159 0.841 37 H 0.068 0.932 38 H 0.119 0.881 39 H 0.064 0.936 40 H 0.141 0.859 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.581 -0.308 4.159 4.904 hybrid contribution -0.665 0.304 -1.869 2.007 sum 1.916 -0.004 2.290 2.986 Atomic orbital electron populations 1.23484 0.76420 1.04937 1.02222 1.87009 1.23503 1.31103 1.82086 1.23575 0.91384 0.81964 0.71738 1.90674 1.66857 1.37140 1.46805 1.20979 0.85190 0.87697 0.99457 1.45558 1.43076 1.03158 1.43481 1.18211 0.81566 0.83264 0.82169 1.90849 1.31189 1.86180 1.31447 1.20911 1.02341 0.93892 1.02351 1.23476 0.89181 0.99142 0.89494 1.67815 1.26342 0.99133 1.26909 1.23239 0.92187 0.95592 0.91888 1.21326 0.99370 0.97254 0.99632 1.25238 1.08146 0.96828 0.88711 1.86620 1.31181 1.92589 1.25105 0.94055 0.77394 0.74459 0.86518 1.21637 0.95288 0.90473 0.95053 1.23531 1.04545 0.89034 0.97139 1.23549 0.90698 0.89667 0.95506 0.88882 1.87886 1.33816 1.46336 1.62122 1.22999 1.02791 0.90238 0.91394 1.23962 1.03270 0.96105 0.94629 0.86474 0.91702 0.92348 0.73510 0.79145 0.80313 0.85346 0.76296 1.22780 1.19747 0.84296 0.88573 0.84094 0.93194 0.88102 0.93611 0.85917 0.91313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.08 10.56 113.37 1.20 1.28 16 2 O -0.32 -2.63 6.29 -43.44 -0.27 -2.90 16 3 C 0.47 3.31 6.98 71.23 0.50 3.80 16 4 O -0.53 -5.55 14.99 21.96 0.33 -5.22 16 5 C 0.16 0.08 1.22 3.38 0.00 0.09 16 6 N -0.70 2.13 5.27 -426.77 -2.25 -0.12 16 7 C 0.56 1.32 7.13 86.79 0.62 1.94 16 8 O -0.52 -5.03 12.93 20.26 0.26 -4.77 16 9 C -0.19 0.05 5.89 -19.99 -0.12 -0.07 16 10 C 0.15 -0.54 10.71 85.02 0.91 0.37 16 11 N -0.49 0.45 10.35 -194.75 -2.01 -1.56 16 12 C 0.13 -0.36 9.84 84.71 0.83 0.48 16 13 C -0.17 0.36 5.35 -19.81 -0.11 0.25 16 14 C -0.08 0.24 2.81 71.24 0.20 0.44 16 15 O -0.55 -0.44 12.84 -148.98 -1.91 -2.35 16 16 Si 0.77 -3.98 29.91 68.60 2.05 -1.93 16 17 C 0.00 0.00 9.38 22.73 0.21 0.22 16 18 C -0.10 0.33 6.96 31.12 0.22 0.54 16 19 C 0.06 0.05 3.90 31.18 0.12 0.17 16 20 H 0.09 0.27 7.05 -2.39 -0.02 0.26 16 21 O -0.38 -0.72 10.72 -148.98 -1.60 -2.32 16 22 C 0.02 -0.03 10.85 113.37 1.23 1.20 16 23 C -0.14 -0.13 7.30 31.18 0.23 0.10 16 24 H 0.12 -0.03 8.14 -2.39 -0.02 -0.05 16 25 H 0.06 0.16 8.13 -2.38 -0.02 0.14 16 26 H 0.06 0.24 8.13 -2.39 -0.02 0.22 16 27 H 0.42 -4.39 6.71 -92.71 -0.62 -5.02 16 28 H 0.19 -2.13 6.42 -2.91 -0.02 -2.15 16 29 H 0.18 -1.28 4.85 -2.91 -0.01 -1.29 16 30 H 0.13 -0.55 7.96 -2.39 -0.02 -0.57 16 31 H 0.39 -1.97 8.70 -74.05 -0.64 -2.62 16 32 H -0.30 -0.94 7.11 99.48 0.71 -0.23 16 33 H -0.27 0.65 7.01 99.48 0.70 1.35 16 34 H 0.14 0.48 7.74 -2.91 -0.02 0.45 16 35 H 0.10 -0.23 7.85 -2.39 -0.02 -0.25 16 36 H 0.14 -1.18 8.13 -2.38 -0.02 -1.20 16 37 H 0.05 -0.12 8.14 -2.39 -0.02 -0.14 16 38 H 0.10 -0.41 8.14 -2.39 -0.02 -0.43 16 39 H 0.05 -0.09 8.14 -2.39 -0.02 -0.11 16 40 H 0.12 -0.13 8.14 -2.39 -0.02 -0.15 16 41 H 0.07 0.27 8.09 -2.38 -0.02 0.25 16 Total: 0.00 -22.37 346.76 0.49 -21.88 By element: Atomic # 1 Polarization: -11.38 SS G_CDS: -0.15 Total: -11.53 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: 6.05 Total: 10.81 kcal Atomic # 7 Polarization: 2.58 SS G_CDS: -4.27 Total: -1.68 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -3.19 Total: -17.56 kcal Atomic # 14 Polarization: -3.98 SS G_CDS: 2.05 Total: -1.93 kcal Total: -22.37 0.49 -21.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14247462_13287814.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.938 kcal (2) G-P(sol) polarization free energy of solvation -22.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds