Wall clock time and date at job start Sun Mar 7 2021 00:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34232 * 116.99962 * 2 1 4 4 O 1.20821 * 119.99883 * 0.02562 * 3 2 1 5 5 C 1.50693 * 119.99612 * 179.97438 * 3 2 1 6 6 N 1.46494 * 112.85494 * 324.06829 * 5 3 2 7 7 C 1.34779 * 119.99871 * 293.64493 * 6 5 3 8 8 O 1.21582 * 119.99987 * 354.96789 * 7 6 5 9 9 C 1.47536 * 120.00090 * 174.96507 * 7 6 5 10 10 C 1.40139 * 120.19297 * 179.72305 * 9 7 6 11 11 O 1.35646 * 120.14898 * 359.97438 * 10 9 7 12 12 C 1.38715 * 119.69599 * 179.69676 * 10 9 7 13 13 C 1.38049 * 120.08554 * 0.58254 * 12 10 9 14 14 C 1.50701 * 119.80168 * 179.73815 * 13 12 10 15 15 O 1.42901 * 109.47200 * 299.97669 * 14 13 12 16 16 Si 1.86306 * 109.46765 * 179.97438 * 14 13 12 17 17 C 1.38549 * 120.39069 * 359.71955 * 13 12 10 18 18 C 1.37782 * 120.30068 * 359.97149 * 17 13 12 19 19 C 1.53784 * 113.61198 * 192.87193 * 5 3 2 20 20 C 1.53780 * 87.08164 * 270.80029 * 19 5 3 21 21 H 1.09007 * 113.61735 * 89.11409 * 20 19 5 22 22 O 1.42899 * 113.61486 * 220.01972 * 20 19 5 23 23 C 1.42907 * 113.99996 * 210.00050 * 22 20 19 24 24 C 1.53785 * 113.69065 * 95.33724 * 5 3 2 25 25 H 1.09007 * 109.47400 * 300.00020 * 1 2 3 26 26 H 1.08999 * 109.47204 * 59.99722 * 1 2 3 27 27 H 1.08999 * 109.47493 * 180.02562 * 1 2 3 28 28 H 0.97003 * 120.00161 * 113.64352 * 6 5 3 29 29 H 0.96704 * 113.99918 * 89.99897 * 11 10 9 30 30 H 1.08002 * 119.95123 * 180.29885 * 12 10 9 31 31 H 1.08994 * 109.47421 * 59.98141 * 14 13 12 32 32 H 0.96698 * 113.99905 * 300.00350 * 15 14 13 33 33 H 1.48499 * 110.00119 * 58.68029 * 16 14 13 34 34 H 1.48506 * 109.99570 * 180.02562 * 16 14 13 35 35 H 1.08002 * 119.84842 * 180.02562 * 17 13 12 36 36 H 1.08003 * 120.04755 * 180.02562 * 18 17 13 37 37 H 1.08991 * 113.61492 * 25.34991 * 19 5 3 38 38 H 1.09002 * 113.61573 * 156.17161 * 19 5 3 39 39 H 1.09003 * 109.46598 * 299.99985 * 23 22 20 40 40 H 1.08996 * 109.47214 * 59.99815 * 23 22 20 41 41 H 1.08997 * 109.47070 * 179.97438 * 23 22 20 42 42 H 1.08997 * 113.61350 * 203.66948 * 24 5 3 43 43 H 1.09000 * 113.61178 * 334.58110 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 7 4.1913 0.2131 0.7932 7 6 4.0225 0.1820 2.1300 8 8 3.4291 1.0840 2.6890 9 6 4.5577 -0.9467 2.9151 10 6 4.3896 -0.9803 4.3059 11 8 3.7341 0.0255 4.9374 12 6 4.8915 -2.0496 5.0332 13 6 5.5638 -3.0693 4.3898 14 6 6.1116 -4.2250 5.1869 15 8 7.0532 -3.7387 6.1455 16 14 6.9568 -5.4253 4.0397 17 6 5.7376 -3.0366 3.0156 18 6 5.2402 -1.9854 2.2768 19 6 4.1094 2.6789 0.3144 20 6 4.0444 2.9560 -1.1968 21 1 3.0866 3.3590 -1.5261 22 8 5.1601 3.6998 -1.6909 23 6 4.8559 4.5245 -2.8176 24 6 4.1770 1.4376 -1.4014 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 4.7266 -0.4675 0.3560 29 1 2.7808 -0.1158 5.0178 30 1 4.7600 -2.0821 6.1047 31 1 5.2951 -4.7297 5.7032 32 1 7.8084 -3.2774 5.7559 33 1 8.0518 -4.7413 3.3060 34 1 7.5008 -6.5701 4.8136 35 1 6.2647 -3.8393 2.5212 36 1 5.3776 -1.9643 1.2058 37 1 3.4242 3.2912 0.9005 38 1 5.1229 2.6753 0.7158 39 1 4.4961 3.9019 -3.6368 40 1 4.0853 5.2448 -2.5431 41 1 5.7541 5.0559 -3.1320 42 1 5.2094 1.0949 -1.4703 43 1 3.5462 1.0480 -2.2003 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14247462_13422076.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:15:40 Heat of formation + Delta-G solvation = -165.227183 kcal Electronic energy + Delta-G solvation = -30238.789739 eV Core-core repulsion = 25832.015230 eV Total energy + Delta-G solvation = -4406.774509 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 338.134 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.66960 -41.46919 -40.34739 -39.59940 -38.50276 -37.82244 -37.26383 -37.12803 -34.57869 -32.56435 -31.10790 -29.39016 -28.03356 -27.49084 -27.12847 -25.92983 -23.93083 -23.82111 -22.95548 -21.65106 -20.84293 -19.75228 -19.06117 -18.80219 -18.28779 -18.13821 -17.66796 -17.36077 -17.16807 -16.74855 -16.43873 -16.33989 -16.16958 -16.00054 -15.80741 -15.39934 -15.15151 -14.96064 -14.79439 -14.51798 -14.36254 -13.74010 -13.73138 -13.62707 -13.38746 -13.29438 -13.06036 -12.86800 -12.59232 -12.37405 -12.35867 -12.18379 -12.02245 -11.95785 -11.81948 -11.60944 -11.01380 -10.66305 -10.61608 -10.48263 -10.05290 -9.79765 -4.88300 -0.43725 0.16002 0.79195 1.29596 1.38267 1.64969 1.67485 1.78496 2.02142 2.53808 2.76573 3.02156 3.11234 3.16707 3.36294 3.42214 3.45736 3.56579 3.68758 3.78309 3.95312 4.09522 4.18487 4.21833 4.27809 4.39820 4.45160 4.46717 4.52846 4.54057 4.60960 4.63319 4.66472 4.73299 4.77468 4.78572 4.86517 5.03613 5.09478 5.13268 5.18558 5.25104 5.60290 6.13181 6.31009 6.46070 6.47024 6.68604 7.02880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.350 6.350 3 C 0.476 3.524 4 O -0.523 6.523 5 C 0.157 3.843 6 N -0.690 5.690 7 C 0.560 3.440 8 O -0.553 6.553 9 C -0.178 4.178 10 C 0.153 3.847 11 O -0.499 6.499 12 C -0.140 4.140 13 C -0.068 4.068 14 C -0.095 4.095 15 O -0.549 6.549 16 Si 0.782 3.218 17 C -0.130 4.130 18 C -0.049 4.049 19 C -0.118 4.118 20 C 0.064 3.936 21 H 0.094 0.906 22 O -0.387 6.387 23 C 0.021 3.979 24 C -0.120 4.120 25 H 0.052 0.948 26 H 0.069 0.931 27 H 0.135 0.865 28 H 0.426 0.574 29 H 0.406 0.594 30 H 0.133 0.867 31 H 0.128 0.872 32 H 0.388 0.612 33 H -0.272 1.272 34 H -0.308 1.308 35 H 0.166 0.834 36 H 0.173 0.827 37 H 0.064 0.936 38 H 0.107 0.893 39 H 0.058 0.942 40 H 0.043 0.957 41 H 0.099 0.901 42 H 0.141 0.859 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.465 -7.514 -7.784 10.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.266 6.266 3 C 0.318 3.682 4 O -0.410 6.410 5 C 0.068 3.932 6 N -0.346 5.346 7 C 0.349 3.651 8 O -0.431 6.431 9 C -0.182 4.182 10 C 0.107 3.893 11 O -0.312 6.312 12 C -0.159 4.159 13 C -0.069 4.069 14 C -0.203 4.203 15 O -0.358 6.358 16 Si 0.687 3.313 17 C -0.147 4.147 18 C -0.067 4.067 19 C -0.156 4.156 20 C 0.005 3.995 21 H 0.112 0.888 22 O -0.305 6.305 23 C -0.075 4.075 24 C -0.158 4.158 25 H 0.070 0.930 26 H 0.087 0.913 27 H 0.153 0.847 28 H 0.267 0.733 29 H 0.266 0.734 30 H 0.151 0.849 31 H 0.146 0.854 32 H 0.237 0.763 33 H -0.198 1.198 34 H -0.237 1.237 35 H 0.183 0.817 36 H 0.190 0.810 37 H 0.083 0.917 38 H 0.126 0.874 39 H 0.076 0.924 40 H 0.062 0.938 41 H 0.117 0.883 42 H 0.159 0.841 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.811 -6.992 -7.076 9.981 hybrid contribution -0.366 0.961 0.869 1.347 sum 0.445 -6.031 -6.207 8.666 Atomic orbital electron populations 1.23588 0.74629 1.05951 1.02413 1.86489 1.24916 1.32003 1.83172 1.23571 0.91439 0.81724 0.71470 1.90678 1.66958 1.37440 1.45961 1.20921 0.84844 0.90477 0.97004 1.45481 1.53126 1.30299 1.05742 1.18447 0.78911 0.85581 0.82160 1.90853 1.42735 1.38488 1.70976 1.20320 1.07022 0.97561 0.93255 1.18763 0.94500 0.86998 0.89048 1.84727 1.25877 1.42404 1.78215 1.21323 1.00584 0.92961 1.01034 1.20519 0.95859 0.95812 0.94706 1.25510 0.97064 0.99167 0.98543 1.86600 1.37106 1.76831 1.35240 0.94025 0.82820 0.75231 0.79270 1.21248 1.01314 0.99512 0.92612 1.21531 0.92778 0.90672 1.01724 1.23454 1.02461 0.92610 0.97074 1.23555 0.90620 0.91739 0.93585 0.88787 1.87914 1.33758 1.60157 1.48682 1.23022 1.02701 0.94017 0.87737 1.23837 1.04585 0.95893 0.91440 0.92961 0.91256 0.84686 0.73325 0.73434 0.84902 0.85383 0.76285 1.19797 1.23715 0.81733 0.80980 0.91701 0.87424 0.92371 0.93815 0.88301 0.84055 0.87510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 10.56 113.37 1.20 1.18 16 2 O -0.35 -1.25 10.42 -51.43 -0.54 -1.79 16 3 C 0.48 3.28 6.44 71.23 0.46 3.74 16 4 O -0.52 -6.77 15.12 21.98 0.33 -6.43 16 5 C 0.16 0.28 1.11 3.39 0.00 0.29 16 6 N -0.69 1.07 5.07 -427.06 -2.17 -1.10 16 7 C 0.56 2.96 7.41 86.70 0.64 3.60 16 8 O -0.55 -7.95 14.20 16.94 0.24 -7.71 16 9 C -0.18 -0.25 5.89 -20.01 -0.12 -0.37 16 10 C 0.15 0.69 6.72 22.85 0.15 0.84 16 11 O -0.50 -4.06 11.58 -68.68 -0.80 -4.86 16 12 C -0.14 -0.20 9.53 22.34 0.21 0.02 16 13 C -0.07 0.22 5.39 -19.83 -0.11 0.11 16 14 C -0.10 0.37 2.81 71.24 0.20 0.57 16 15 O -0.55 -0.39 12.76 -148.98 -1.90 -2.29 16 16 Si 0.78 -5.07 29.77 68.60 2.04 -3.03 16 17 C -0.13 0.94 8.64 22.24 0.19 1.13 16 18 C -0.05 0.32 9.53 22.52 0.21 0.54 16 19 C -0.12 -0.67 6.15 31.12 0.19 -0.48 16 20 C 0.06 0.12 3.92 31.12 0.12 0.24 16 21 H 0.09 0.28 7.36 -2.38 -0.02 0.27 16 22 O -0.39 -1.22 10.71 -148.98 -1.60 -2.82 16 23 C 0.02 -0.03 10.85 113.37 1.23 1.20 16 24 C -0.12 0.52 7.21 31.12 0.22 0.75 16 25 H 0.05 0.12 8.13 -2.38 -0.02 0.10 16 26 H 0.07 -0.08 8.13 -2.39 -0.02 -0.10 16 27 H 0.14 -0.95 8.14 -2.39 -0.02 -0.97 16 28 H 0.43 -4.22 6.75 -92.71 -0.63 -4.84 16 29 H 0.41 0.60 9.06 -74.05 -0.67 -0.07 16 30 H 0.13 0.29 8.06 -2.91 -0.02 0.27 16 31 H 0.13 -0.66 7.96 -2.39 -0.02 -0.68 16 32 H 0.39 -1.91 8.70 -74.06 -0.64 -2.56 16 33 H -0.27 1.06 7.11 99.48 0.71 1.77 16 34 H -0.31 -0.81 7.11 99.48 0.71 -0.10 16 35 H 0.17 -2.13 4.85 -2.91 -0.01 -2.15 16 36 H 0.17 -2.53 6.42 -2.91 -0.02 -2.55 16 37 H 0.06 0.77 7.63 -2.39 -0.02 0.75 16 38 H 0.11 0.60 8.14 -2.39 -0.02 0.59 16 39 H 0.06 -0.26 8.14 -2.39 -0.02 -0.28 16 40 H 0.04 -0.06 8.14 -2.39 -0.02 -0.08 16 41 H 0.10 -0.38 8.14 -2.39 -0.02 -0.40 16 42 H 0.14 -1.24 8.14 -2.39 -0.02 -1.26 16 43 H 0.11 -0.80 8.10 -2.39 -0.02 -0.81 16 Total: 0.00 -29.42 366.02 -0.37 -29.80 By element: Atomic # 1 Polarization: -12.31 SS G_CDS: -0.81 Total: -13.13 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: 4.82 Total: 13.35 kcal Atomic # 7 Polarization: 1.07 SS G_CDS: -2.17 Total: -1.10 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -4.26 Total: -25.89 kcal Atomic # 14 Polarization: -5.07 SS G_CDS: 2.04 Total: -3.03 kcal Total: -29.42 -0.37 -29.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14247462_13422076.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.428 kcal (2) G-P(sol) polarization free energy of solvation -29.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds