Wall clock time and date at job start Sun Mar 7 2021 00:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34234 * 117.00086 * 2 1 4 4 O 1.20825 * 119.99853 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00024 * 179.97438 * 3 2 1 6 6 N 1.46498 * 112.85031 * 25.33501 * 5 3 2 7 7 C 1.34777 * 119.99828 * 309.38649 * 6 5 3 8 8 O 1.21593 * 119.99949 * 0.28071 * 7 6 5 9 9 C 1.47533 * 119.99975 * 180.27938 * 7 6 5 10 10 C 1.40143 * 120.18891 * 179.72747 * 9 7 6 11 11 O 1.35654 * 120.15124 * 359.97438 * 10 9 7 12 12 C 1.38716 * 119.69328 * 179.76823 * 10 9 7 13 13 C 1.50704 * 119.95143 * 180.22546 * 12 10 9 14 14 O 1.42903 * 109.46910 * 75.28160 * 13 12 10 15 15 Si 1.86309 * 109.46847 * 195.27635 * 13 12 10 16 16 C 1.38045 * 120.08686 * 0.50605 * 12 10 9 17 17 C 1.38550 * 120.39263 * 359.74520 * 16 12 10 18 18 C 1.50701 * 119.84969 * 180.02562 * 17 16 12 19 19 C 1.37793 * 120.29778 * 359.97438 * 17 16 12 20 20 C 1.53784 * 113.61225 * 254.13490 * 5 3 2 21 21 C 1.54052 * 86.98274 * 219.98193 * 20 5 3 22 22 H 1.09001 * 113.69530 * 139.99579 * 21 20 5 23 23 O 1.42909 * 113.61311 * 270.88406 * 21 20 5 24 24 C 1.42899 * 113.99989 * 247.49229 * 23 21 20 25 25 C 1.53776 * 113.61169 * 156.52813 * 5 3 2 26 26 H 1.09004 * 109.46627 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47096 * 300.00044 * 1 2 3 28 28 H 1.08999 * 109.46610 * 60.00154 * 1 2 3 29 29 H 0.97001 * 120.00384 * 129.67096 * 6 5 3 30 30 H 0.96704 * 113.98986 * 90.01030 * 11 10 9 31 31 H 1.08994 * 109.47458 * 315.27680 * 13 12 10 32 32 H 0.96700 * 114.00412 * 59.99825 * 14 13 12 33 33 H 1.48501 * 109.99837 * 180.02562 * 15 13 12 34 34 H 1.48497 * 109.99883 * 301.32438 * 15 13 12 35 35 H 1.08005 * 119.80319 * 179.76823 * 16 12 10 36 36 H 1.09001 * 109.46931 * 269.97166 * 18 17 16 37 37 H 1.09002 * 109.47418 * 29.97753 * 18 17 16 38 38 H 1.09005 * 109.46591 * 149.97591 * 18 17 16 39 39 H 1.08000 * 120.03989 * 179.97438 * 19 17 16 40 40 H 1.08994 * 113.61573 * 334.48433 * 20 5 3 41 41 H 1.09000 * 113.61330 * 105.39100 * 20 5 3 42 42 H 1.09000 * 109.47262 * 300.00264 * 24 23 21 43 43 H 1.09004 * 109.46859 * 60.00156 * 24 23 21 44 44 H 1.09000 * 109.47207 * 180.02562 * 24 23 21 45 45 H 1.08999 * 113.61811 * 254.61272 * 25 5 3 46 46 H 1.09005 * 113.61604 * 25.51728 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2749 0.0006 6 7 4.1986 0.0860 -0.5766 7 6 3.8413 -1.1415 -0.1499 8 8 2.9906 -1.2623 0.7104 9 6 4.4823 -2.3385 -0.7268 10 6 4.1179 -3.6166 -0.2820 11 8 3.1740 -3.7592 0.6818 12 6 4.7238 -4.7352 -0.8349 13 6 4.3327 -6.1125 -0.3646 14 8 3.0590 -6.4589 -0.9120 15 14 5.6082 -7.3472 -0.9300 16 6 5.6886 -4.5882 -1.8113 17 6 6.0554 -3.3262 -2.2499 18 6 7.1096 -3.1800 -3.3168 19 6 5.4598 -2.2043 -1.7158 20 6 4.1608 1.6921 1.3561 21 6 5.1654 2.5471 0.5605 22 1 5.3689 3.5178 1.0125 23 8 6.3552 1.8433 0.1982 24 6 7.5329 2.3158 0.8555 25 6 4.1141 2.5976 -0.5607 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 4.8772 0.1824 -1.2629 30 1 2.2726 -3.8375 0.3407 31 1 4.2753 -6.1221 0.7238 32 1 3.0362 -6.4704 -1.8787 33 1 5.2338 -8.7097 -0.4731 34 1 5.7189 -7.3211 -2.4106 35 1 6.1601 -5.4622 -2.2359 36 1 8.0914 -3.1038 -2.8494 37 1 7.0860 -4.0502 -3.9728 38 1 6.9140 -2.2800 -3.8999 39 1 5.7492 -1.2226 -2.0606 40 1 3.4780 2.2791 1.9702 41 1 4.6220 0.8693 1.9024 42 1 7.6915 3.3652 0.6069 43 1 7.4135 2.2119 1.9340 44 1 8.3919 1.7310 0.5267 45 1 4.5376 2.5056 -1.5608 46 1 3.4184 3.4319 -0.4696 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14247462_13422088.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:15:43 Heat of formation + Delta-G solvation = -159.450484 kcal Electronic energy + Delta-G solvation = -33400.853143 eV Core-core repulsion = 28838.791512 eV Total energy + Delta-G solvation = -4562.061631 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 352.149 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.52795 -41.45461 -40.40132 -39.49493 -37.99886 -37.75443 -37.68946 -36.83531 -34.35308 -33.02304 -32.45594 -29.31232 -27.75910 -27.50815 -27.16422 -26.76211 -26.48076 -24.90767 -22.73375 -22.04707 -21.53477 -20.48416 -19.61159 -19.15370 -18.59902 -18.06261 -17.80489 -17.54841 -17.28313 -17.15686 -16.78676 -16.63859 -16.06382 -16.01421 -15.75803 -15.64821 -15.39595 -14.91042 -14.88005 -14.82187 -14.43364 -14.35196 -14.20404 -13.66082 -13.60098 -13.55398 -13.30440 -13.21399 -13.03542 -12.90043 -12.56099 -12.49375 -12.20490 -12.15633 -11.99475 -11.83654 -11.76138 -11.67067 -11.49228 -10.88173 -10.59140 -10.49838 -10.25277 -10.03794 -9.46001 -4.92889 -0.28711 0.11074 0.91938 1.26958 1.54725 1.68748 1.82161 1.86471 1.96050 2.58259 2.61373 3.06107 3.23606 3.29897 3.40014 3.47576 3.54108 3.62828 3.73360 3.81390 4.14264 4.16640 4.18392 4.22256 4.24049 4.40505 4.45015 4.48728 4.58258 4.59680 4.60295 4.61282 4.65506 4.70178 4.74603 4.81158 4.86197 4.93423 4.94834 5.01924 5.22120 5.26872 5.27803 5.31209 5.46065 5.71115 6.19005 6.44975 6.47953 6.60303 6.74149 7.22376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.325 6.325 3 C 0.462 3.538 4 O -0.533 6.533 5 C 0.155 3.845 6 N -0.688 5.688 7 C 0.552 3.448 8 O -0.513 6.513 9 C -0.172 4.172 10 C 0.166 3.834 11 O -0.490 6.490 12 C -0.153 4.153 13 C -0.082 4.082 14 O -0.546 6.546 15 Si 0.776 3.224 16 C -0.081 4.081 17 C -0.093 4.093 18 C -0.117 4.117 19 C -0.062 4.062 20 C -0.151 4.151 21 C 0.079 3.921 22 H 0.111 0.889 23 O -0.377 6.377 24 C 0.026 3.974 25 C -0.113 4.113 26 H 0.115 0.885 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.419 0.581 30 H 0.400 0.600 31 H 0.109 0.891 32 H 0.386 0.614 33 H -0.304 1.304 34 H -0.261 1.261 35 H 0.153 0.847 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.154 0.846 40 H 0.105 0.895 41 H 0.076 0.924 42 H 0.057 0.943 43 H 0.042 0.958 44 H 0.098 0.902 45 H 0.111 0.889 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.337 1.837 -5.152 9.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.239 6.239 3 C 0.305 3.695 4 O -0.423 6.423 5 C 0.065 3.935 6 N -0.344 5.344 7 C 0.340 3.660 8 O -0.388 6.388 9 C -0.176 4.176 10 C 0.120 3.880 11 O -0.301 6.301 12 C -0.154 4.154 13 C -0.190 4.190 14 O -0.354 6.354 15 Si 0.679 3.321 16 C -0.099 4.099 17 C -0.093 4.093 18 C -0.173 4.173 19 C -0.080 4.080 20 C -0.190 4.190 21 C 0.021 3.979 22 H 0.128 0.872 23 O -0.296 6.296 24 C -0.070 4.070 25 C -0.151 4.151 26 H 0.133 0.867 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.259 0.741 30 H 0.259 0.741 31 H 0.127 0.873 32 H 0.235 0.765 33 H -0.233 1.233 34 H -0.187 1.187 35 H 0.171 0.829 36 H 0.106 0.894 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.172 0.828 40 H 0.123 0.877 41 H 0.094 0.906 42 H 0.076 0.924 43 H 0.061 0.939 44 H 0.117 0.883 45 H 0.130 0.870 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 7.947 1.159 -4.130 9.031 hybrid contribution -1.891 0.300 -0.591 2.004 sum 6.056 1.460 -4.721 7.816 Atomic orbital electron populations 1.23428 0.77007 1.04696 1.01938 1.87043 1.23109 1.31673 1.82084 1.24269 0.92216 0.81721 0.71273 1.90647 1.67075 1.37200 1.47400 1.21244 0.83767 0.88951 0.99535 1.45317 1.43160 1.02948 1.42974 1.18282 0.82028 0.83276 0.82424 1.90854 1.31027 1.86111 1.30851 1.20349 1.02968 0.92610 1.01648 1.18482 0.91590 0.90441 0.87511 1.84659 1.19084 1.94966 1.31440 1.20610 1.00376 0.95387 0.98992 1.25222 0.93380 0.97287 1.03148 1.86600 1.31026 1.91088 1.26712 0.93858 0.84354 0.74267 0.79577 1.21383 0.94955 0.98827 0.94737 1.20087 0.98650 0.91792 0.98795 1.20912 0.96517 1.04115 0.95774 1.21402 0.93083 1.00338 0.93222 1.23966 0.99065 1.01234 0.94760 1.22977 0.84828 0.95440 0.94679 0.87158 1.87820 1.15469 1.59291 1.66981 1.23000 0.86753 1.00404 0.96879 1.23600 0.96961 0.93242 1.01264 0.86660 0.92552 0.92018 0.74126 0.74056 0.87340 0.76520 1.23253 1.18698 0.82947 0.89377 0.90430 0.90069 0.82848 0.87681 0.90573 0.92428 0.93911 0.88345 0.87030 0.85621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 10.56 113.37 1.20 1.34 16 2 O -0.33 -3.66 6.32 -43.47 -0.27 -3.94 16 3 C 0.46 4.62 7.07 71.24 0.50 5.12 16 4 O -0.53 -7.07 15.79 21.97 0.35 -6.72 16 5 C 0.15 0.54 1.10 3.38 0.00 0.55 16 6 N -0.69 -1.36 4.71 -427.06 -2.01 -3.37 16 7 C 0.55 4.06 7.12 86.69 0.62 4.67 16 8 O -0.51 -7.22 11.70 26.76 0.31 -6.90 16 9 C -0.17 -0.71 5.89 -20.01 -0.12 -0.83 16 10 C 0.17 0.99 6.69 22.85 0.15 1.14 16 11 O -0.49 -4.62 10.90 -68.78 -0.75 -5.37 16 12 C -0.15 -0.22 5.27 -19.79 -0.10 -0.32 16 13 C -0.08 -0.11 2.38 71.24 0.17 0.06 16 14 O -0.55 -1.76 12.88 -148.98 -1.92 -3.68 16 15 Si 0.78 -1.93 30.24 68.60 2.07 0.14 16 16 C -0.08 0.23 8.30 22.30 0.19 0.42 16 17 C -0.09 0.39 5.87 -19.90 -0.12 0.27 16 18 C -0.12 1.08 10.00 71.24 0.71 1.79 16 19 C -0.06 0.14 9.18 22.52 0.21 0.35 16 20 C -0.15 -0.35 7.26 31.21 0.23 -0.13 16 21 C 0.08 -0.24 4.38 31.21 0.14 -0.11 16 22 H 0.11 -0.75 7.87 -2.39 -0.02 -0.77 16 23 O -0.38 0.97 10.00 -148.98 -1.49 -0.52 16 24 C 0.03 -0.16 10.85 113.37 1.23 1.07 16 25 C -0.11 0.28 7.06 31.12 0.22 0.50 16 26 H 0.12 0.26 8.14 -2.38 -0.02 0.24 16 27 H 0.06 0.39 8.13 -2.39 -0.02 0.37 16 28 H 0.06 0.32 8.13 -2.39 -0.02 0.30 16 29 H 0.42 -1.40 6.50 -92.71 -0.60 -2.00 16 30 H 0.40 2.15 9.06 -74.05 -0.67 1.48 16 31 H 0.11 0.41 7.82 -2.39 -0.02 0.39 16 32 H 0.39 -1.35 8.70 -74.06 -0.64 -2.00 16 33 H -0.30 -1.76 7.11 99.48 0.71 -1.06 16 34 H -0.26 0.53 6.68 99.48 0.66 1.19 16 35 H 0.15 -1.03 4.83 -2.91 -0.01 -1.05 16 36 H 0.09 -0.94 8.14 -2.39 -0.02 -0.96 16 37 H 0.08 -0.79 8.08 -2.39 -0.02 -0.81 16 38 H 0.08 -0.88 8.08 -2.38 -0.02 -0.90 16 39 H 0.15 -1.18 6.40 -2.91 -0.02 -1.20 16 40 H 0.10 0.23 8.09 -2.39 -0.02 0.21 16 41 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.06 -0.48 8.14 -2.39 -0.02 -0.49 16 43 H 0.04 -0.24 8.14 -2.38 -0.02 -0.26 16 44 H 0.10 -0.78 8.14 -2.39 -0.02 -0.80 16 45 H 0.11 -0.66 8.11 -2.39 -0.02 -0.68 16 46 H 0.13 -0.25 7.38 -2.38 -0.02 -0.27 16 Total: 0.00 -23.72 381.36 0.65 -23.07 By element: Atomic # 1 Polarization: -7.75 SS G_CDS: -0.87 Total: -8.62 kcal Atomic # 6 Polarization: 10.67 SS G_CDS: 5.22 Total: 15.90 kcal Atomic # 7 Polarization: -1.36 SS G_CDS: -2.01 Total: -3.37 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -3.77 Total: -27.12 kcal Atomic # 14 Polarization: -1.93 SS G_CDS: 2.07 Total: 0.14 kcal Total: -23.72 0.65 -23.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14247462_13422088.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.376 kcal (2) G-P(sol) polarization free energy of solvation -23.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds