Wall clock time and date at job start Sun Mar 7 2021 00:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34227 * 117.00039 * 2 1 4 4 O 1.20831 * 120.00161 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00099 * 180.02562 * 3 2 1 6 6 N 1.46501 * 112.90585 * 335.68929 * 5 3 2 7 7 C 1.34780 * 120.00238 * 292.15804 * 6 5 3 8 8 O 1.21615 * 119.99992 * 5.04914 * 7 6 5 9 9 C 1.47375 * 120.00223 * 185.04086 * 7 6 5 10 10 C 1.36420 * 127.18911 * 0.03200 * 9 7 6 11 11 O 1.33653 * 108.39458 * 179.97438 * 10 9 7 12 12 C 1.34214 * 110.90890 * 359.97438 * 11 10 9 13 13 C 1.50707 * 125.43661 * 180.02562 * 12 11 10 14 14 O 1.42896 * 109.47104 * 245.02949 * 13 12 11 15 15 Si 1.86298 * 109.47178 * 5.03111 * 13 12 11 16 16 C 1.34173 * 109.12537 * 359.75823 * 12 11 10 17 17 C 1.53781 * 113.61432 * 204.44125 * 5 3 2 18 18 C 1.53781 * 87.07987 * 220.01610 * 17 5 3 19 19 H 1.08999 * 113.60896 * 139.98180 * 18 17 5 20 20 O 1.42904 * 113.61450 * 270.88229 * 18 17 5 21 21 C 1.42892 * 113.99892 * 209.99905 * 20 18 17 22 22 C 1.53773 * 113.61670 * 106.94283 * 5 3 2 23 23 H 1.08995 * 109.47226 * 59.98955 * 1 2 3 24 24 H 1.08998 * 109.47254 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46411 * 299.99223 * 1 2 3 26 26 H 0.96993 * 119.99995 * 112.15923 * 6 5 3 27 27 H 1.07994 * 125.80371 * 359.95474 * 10 9 7 28 28 H 1.08995 * 109.47011 * 125.03453 * 13 12 11 29 29 H 0.96699 * 113.99993 * 180.02562 * 14 13 12 30 30 H 1.48500 * 110.00156 * 299.99953 * 15 13 12 31 31 H 1.48508 * 109.99934 * 61.31960 * 15 13 12 32 32 H 1.08004 * 127.02452 * 180.26073 * 16 12 11 33 33 H 1.09001 * 113.61475 * 105.46925 * 17 5 3 34 34 H 1.08997 * 113.61885 * 334.56876 * 17 5 3 35 35 H 1.08996 * 109.47848 * 300.00302 * 21 20 18 36 36 H 1.09009 * 109.47554 * 60.00130 * 21 20 18 37 37 H 1.09003 * 109.47550 * 180.02562 * 21 20 18 38 38 H 1.09001 * 113.61189 * 25.43397 * 22 5 3 39 39 H 1.09000 * 113.61441 * 254.53292 * 22 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5664 1.2749 -0.0006 6 7 4.2004 0.0765 0.5545 7 6 4.0724 -0.2078 1.8657 8 8 3.3562 0.4783 2.5696 9 6 4.8002 -1.3501 2.4466 10 6 5.6369 -2.2106 1.7982 11 8 6.0920 -3.1033 2.6827 12 6 5.5871 -2.8679 3.9037 13 6 5.8828 -3.6745 5.1419 14 8 4.6884 -4.3214 5.5856 15 14 7.1762 -4.9577 4.7529 16 6 4.7816 -1.7964 3.8473 17 6 4.1146 2.5880 0.5825 18 6 5.1636 2.5574 -0.5416 19 1 5.3645 3.5358 -0.9780 20 8 6.3545 1.8482 -0.1942 21 6 7.5304 2.3326 -0.8456 22 6 4.1595 1.7174 -1.3485 23 1 -0.3633 0.5140 -0.8898 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5137 0.8901 26 1 4.7123 -0.5124 -0.0217 27 1 5.8885 -2.1765 0.7485 28 1 6.2511 -3.0138 5.9266 29 1 4.8045 -4.8592 6.3808 30 1 6.6862 -5.8651 3.6843 31 1 8.4338 -4.2966 4.3208 32 1 4.2304 -1.3534 4.6637 33 1 4.5403 2.4787 1.5800 34 1 3.4185 3.4233 0.5075 35 1 7.4090 2.2475 -1.9254 36 1 7.6892 3.3776 -0.5791 37 1 8.3904 1.7421 -0.5295 38 1 3.4756 2.3147 -1.9514 39 1 4.6214 0.9053 -1.9100 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14247462_13456056.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:15:58 Heat of formation + Delta-G solvation = -132.396864 kcal Electronic energy + Delta-G solvation = -26952.079063 eV Core-core repulsion = 22830.491944 eV Total energy + Delta-G solvation = -4121.587120 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 312.118 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.86628 -42.53086 -40.72972 -39.76097 -37.89364 -37.80311 -37.05151 -34.68721 -33.76522 -31.92048 -29.46359 -27.82856 -27.17514 -26.93383 -26.38093 -24.92197 -22.77839 -22.35704 -21.18153 -20.57871 -19.40228 -18.93564 -18.66986 -18.29325 -17.71477 -17.32798 -17.29145 -17.22950 -17.01433 -16.16196 -16.07784 -15.81612 -15.79688 -15.55602 -14.89317 -14.81830 -14.48307 -14.29524 -14.20564 -13.88549 -13.69580 -13.51287 -13.37919 -13.09208 -12.71898 -12.60645 -12.21694 -12.15773 -12.10899 -11.95845 -11.72448 -11.32089 -11.07406 -10.66561 -10.48695 -10.37031 -9.88679 -5.02756 0.11536 0.69752 0.85656 1.18677 1.50395 1.56304 1.69352 1.72429 2.02687 2.14761 2.55559 3.10251 3.16376 3.26782 3.38286 3.44250 3.61336 3.70143 3.83948 4.10366 4.13385 4.16653 4.24958 4.34793 4.40697 4.41607 4.48269 4.52258 4.55054 4.58269 4.65586 4.71454 4.76594 4.77572 4.91672 5.02701 5.13055 5.18180 5.71146 6.18091 6.27518 6.48346 6.82812 6.97552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.468 3.532 4 O -0.529 6.529 5 C 0.153 3.847 6 N -0.674 5.674 7 C 0.599 3.401 8 O -0.574 6.574 9 C -0.260 4.260 10 C 0.061 3.939 11 O -0.183 6.183 12 C -0.027 4.027 13 C -0.049 4.049 14 O -0.564 6.564 15 Si 0.818 3.182 16 C -0.143 4.143 17 C -0.132 4.132 18 C 0.078 3.922 19 H 0.113 0.887 20 O -0.380 6.380 21 C 0.024 3.976 22 C -0.125 4.125 23 H 0.072 0.928 24 H 0.127 0.873 25 H 0.050 0.950 26 H 0.423 0.577 27 H 0.261 0.739 28 H 0.119 0.881 29 H 0.413 0.587 30 H -0.301 1.301 31 H -0.288 1.288 32 H 0.152 0.848 33 H 0.069 0.931 34 H 0.114 0.886 35 H 0.060 0.940 36 H 0.047 0.953 37 H 0.094 0.906 38 H 0.125 0.875 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.661 -3.821 -2.690 8.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.275 6.275 3 C 0.310 3.690 4 O -0.418 6.418 5 C 0.064 3.936 6 N -0.328 5.328 7 C 0.388 3.612 8 O -0.454 6.454 9 C -0.264 4.264 10 C -0.008 4.008 11 O -0.080 6.080 12 C -0.075 4.075 13 C -0.157 4.157 14 O -0.376 6.376 15 Si 0.722 3.278 16 C -0.163 4.163 17 C -0.170 4.170 18 C 0.020 3.980 19 H 0.131 0.869 20 O -0.298 6.298 21 C -0.072 4.072 22 C -0.163 4.163 23 H 0.091 0.909 24 H 0.145 0.855 25 H 0.069 0.931 26 H 0.262 0.738 27 H 0.277 0.723 28 H 0.137 0.863 29 H 0.266 0.734 30 H -0.228 1.228 31 H -0.215 1.215 32 H 0.170 0.830 33 H 0.088 0.912 34 H 0.132 0.868 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.112 0.888 38 H 0.143 0.857 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.403 -3.476 -3.206 7.960 hybrid contribution -0.922 0.866 -0.254 1.290 sum 5.481 -2.610 -3.460 6.987 Atomic orbital electron populations 1.23515 0.75131 1.05515 1.02371 1.86514 1.24734 1.33117 1.83168 1.24319 0.92383 0.81398 0.70883 1.90648 1.67072 1.37210 1.46866 1.21336 0.83165 0.88276 1.00847 1.45027 1.53999 1.25459 1.08311 1.17381 0.79506 0.82630 0.81684 1.90797 1.40524 1.52507 1.61568 1.21380 1.07688 1.01825 0.95512 1.25293 0.92874 0.86658 0.96025 1.83736 1.58327 1.48262 1.17666 1.21703 1.01198 0.98951 0.85632 1.24183 0.96666 1.03203 0.91688 1.86422 1.31973 1.68109 1.51070 0.94012 0.72784 0.76978 0.84028 1.22569 1.00601 0.96893 0.96204 1.23616 0.97992 0.95061 1.00318 1.22931 0.84802 0.96350 0.93910 0.86949 1.87895 1.15611 1.57796 1.68530 1.23023 0.86692 0.99827 0.97663 1.23843 0.98071 1.02060 0.92278 0.90937 0.85474 0.93124 0.73819 0.72331 0.86341 0.73362 1.22833 1.21462 0.83001 0.91222 0.86776 0.92110 0.93471 0.88770 0.85656 0.86118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 10.56 113.37 1.20 1.33 16 2 O -0.36 -3.45 10.28 -51.39 -0.53 -3.97 16 3 C 0.47 4.94 6.47 71.24 0.46 5.41 16 4 O -0.53 -8.09 15.81 21.95 0.35 -7.75 16 5 C 0.15 0.64 1.01 3.38 0.00 0.65 16 6 N -0.67 -1.88 4.40 -427.20 -1.88 -3.76 16 7 C 0.60 6.18 7.29 86.65 0.63 6.82 16 8 O -0.57 -11.17 15.68 -4.08 -0.06 -11.23 16 9 C -0.26 -1.95 6.31 -18.99 -0.12 -2.07 16 10 C 0.06 0.04 11.61 67.40 0.78 0.82 16 11 O -0.18 -0.96 8.90 4.48 0.04 -0.92 16 12 C -0.03 -0.18 6.22 24.76 0.15 -0.02 16 13 C -0.05 0.03 2.96 71.24 0.21 0.24 16 14 O -0.56 0.09 12.86 -148.98 -1.92 -1.82 16 15 Si 0.82 -2.45 32.09 68.60 2.20 -0.24 16 16 C -0.14 -1.38 10.90 23.65 0.26 -1.12 16 17 C -0.13 -0.65 6.71 31.12 0.21 -0.44 16 18 C 0.08 -0.20 4.37 31.12 0.14 -0.06 16 19 H 0.11 -0.73 7.87 -2.39 -0.02 -0.75 16 20 O -0.38 0.54 10.13 -148.98 -1.51 -0.96 16 21 C 0.02 -0.15 10.85 113.37 1.23 1.08 16 22 C -0.12 0.53 7.20 31.12 0.22 0.75 16 23 H 0.07 0.21 8.13 -2.39 -0.02 0.19 16 24 H 0.13 -0.12 8.14 -2.39 -0.02 -0.14 16 25 H 0.05 0.38 8.13 -2.39 -0.02 0.36 16 26 H 0.42 -2.02 7.66 -92.71 -0.71 -2.73 16 27 H 0.26 -2.77 7.48 -2.91 -0.02 -2.79 16 28 H 0.12 -0.67 7.96 -2.39 -0.02 -0.69 16 29 H 0.41 -4.96 8.74 -74.06 -0.65 -5.61 16 30 H -0.30 -1.65 7.11 99.48 0.71 -0.95 16 31 H -0.29 -0.77 7.11 99.48 0.71 -0.06 16 32 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 33 H 0.07 0.72 7.35 -2.39 -0.02 0.70 16 34 H 0.11 0.65 7.39 -2.39 -0.02 0.63 16 35 H 0.06 -0.56 8.14 -2.39 -0.02 -0.58 16 36 H 0.05 -0.30 8.14 -2.38 -0.02 -0.32 16 37 H 0.09 -0.70 8.14 -2.39 -0.02 -0.72 16 38 H 0.13 -0.71 8.09 -2.39 -0.02 -0.72 16 39 H 0.12 -1.08 8.10 -2.39 -0.02 -1.10 16 Total: 0.00 -32.81 344.34 1.85 -30.96 By element: Atomic # 1 Polarization: -13.44 SS G_CDS: -0.22 Total: -13.66 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: 5.38 Total: 13.37 kcal Atomic # 7 Polarization: -1.88 SS G_CDS: -1.88 Total: -3.76 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -3.63 Total: -26.66 kcal Atomic # 14 Polarization: -2.45 SS G_CDS: 2.20 Total: -0.24 kcal Total: -32.81 1.85 -30.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14247462_13456056.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.439 kcal (2) G-P(sol) polarization free energy of solvation -32.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds