Wall clock time and date at job start Sun Mar 7 2021 00:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34235 * 116.99486 * 2 1 4 4 O 1.20823 * 120.00076 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99620 * 180.02562 * 3 2 1 6 6 N 1.46502 * 112.84992 * 335.55618 * 5 3 2 7 7 C 1.34768 * 119.99826 * 293.58557 * 6 5 3 8 8 O 1.21696 * 120.00453 * 5.00837 * 7 6 5 9 9 C 1.46681 * 119.99915 * 185.01264 * 7 6 5 10 10 C 1.37875 * 126.23237 * 180.02562 * 9 7 6 11 11 C 1.50698 * 126.45883 * 359.97438 * 10 9 7 12 12 C 1.39837 * 107.08248 * 179.97438 * 10 9 7 13 13 C 1.35449 * 107.86298 * 0.02562 * 12 10 9 14 14 C 1.50707 * 125.56199 * 179.97438 * 13 12 10 15 15 O 1.42898 * 109.46994 * 245.02360 * 14 13 12 16 16 Si 1.86300 * 109.46969 * 5.02150 * 14 13 12 17 17 N 1.35531 * 108.87755 * 359.76193 * 13 12 10 18 18 C 1.53782 * 113.61153 * 204.35631 * 5 3 2 19 19 C 1.53780 * 87.08154 * 220.01677 * 18 5 3 20 20 H 1.09003 * 113.60924 * 139.98372 * 19 18 5 21 21 O 1.42888 * 113.61708 * 270.80321 * 19 18 5 22 22 C 1.42905 * 113.99973 * 208.47236 * 21 19 18 23 23 C 1.53780 * 87.17216 * 25.39667 * 19 18 5 24 24 H 1.08999 * 109.46761 * 299.99449 * 1 2 3 25 25 H 1.08999 * 109.47188 * 59.99960 * 1 2 3 26 26 H 1.08998 * 109.46621 * 179.97438 * 1 2 3 27 27 H 0.96995 * 119.99823 * 113.58916 * 6 5 3 28 28 H 1.08999 * 109.46943 * 90.00072 * 11 10 9 29 29 H 1.09003 * 109.46964 * 210.00536 * 11 10 9 30 30 H 1.09002 * 109.46872 * 330.00019 * 11 10 9 31 31 H 1.07994 * 126.06468 * 179.97438 * 12 10 9 32 32 H 1.08994 * 109.47057 * 125.02074 * 14 13 12 33 33 H 0.96704 * 113.99902 * 179.97438 * 15 14 13 34 34 H 1.48504 * 110.00193 * 299.99922 * 16 14 13 35 35 H 1.48496 * 110.00262 * 61.32107 * 16 14 13 36 36 H 0.97001 * 125.68235 * 180.26208 * 17 13 12 37 37 H 1.09004 * 113.60902 * 105.46821 * 18 5 3 38 38 H 1.08997 * 113.61721 * 334.57643 * 18 5 3 39 39 H 1.09003 * 109.47294 * 180.02562 * 22 21 19 40 40 H 1.09004 * 109.47130 * 299.99774 * 22 21 19 41 41 H 1.09000 * 109.47217 * 59.99948 * 22 21 19 42 42 H 1.09003 * 113.61885 * 89.15374 * 23 19 18 43 43 H 1.09005 * 113.61306 * 220.06187 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0006 6 7 4.1990 0.0773 0.5576 7 6 4.0461 -0.2191 1.8633 8 8 3.3096 0.4557 2.5584 9 6 4.7676 -1.3551 2.4468 10 6 4.7066 -1.7718 3.7597 11 6 3.8889 -1.1467 4.8605 12 6 5.5464 -2.8837 3.8773 13 6 6.0940 -3.1212 2.6614 14 6 7.0626 -4.2294 2.3376 15 8 8.3245 -3.6674 1.9721 16 14 7.2785 -5.3215 3.8315 17 7 5.6251 -2.2024 1.7823 18 6 4.1144 2.5890 0.5806 19 6 5.1635 2.5569 -0.5434 20 1 5.3644 3.5348 -0.9811 21 8 6.3551 1.8499 -0.1942 22 6 7.5249 2.3116 -0.8727 23 6 4.1616 1.7147 -1.3507 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 4.7279 -0.5022 -0.0127 28 1 2.9051 -1.6149 4.8929 29 1 4.3930 -1.2937 5.8157 30 1 3.7774 -0.0795 4.6690 31 1 5.7270 -3.4516 4.7779 32 1 6.6742 -4.8207 1.5084 33 1 8.9984 -4.3247 1.7505 34 1 7.8075 -4.5272 4.9692 35 1 5.9791 -5.9372 4.2026 36 1 5.8565 -2.1496 0.8417 37 1 4.5400 2.4812 1.5783 38 1 3.4182 3.4242 0.5044 39 1 8.3859 1.7243 -0.5535 40 1 7.3886 2.2006 -1.9485 41 1 7.6926 3.3619 -0.6342 42 1 3.4782 2.3104 -1.9559 43 1 4.6252 0.9020 -1.9098 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14247462_13940406.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:16:01 Heat of formation + Delta-G solvation = -112.186714 kcal Electronic energy + Delta-G solvation = -29328.649685 eV Core-core repulsion = 25150.119986 eV Total energy + Delta-G solvation = -4178.529699 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 325.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.89008 -42.30440 -40.64823 -39.67943 -37.81106 -37.64160 -37.08261 -34.62064 -33.55096 -31.80045 -29.49282 -28.37077 -27.87395 -27.23627 -27.14477 -26.05675 -23.23012 -22.56505 -21.71744 -20.67642 -20.47549 -19.58478 -19.29619 -18.44903 -18.29241 -17.58311 -17.33721 -17.04719 -16.89457 -16.39077 -16.08889 -15.97041 -15.56649 -15.25428 -15.12647 -15.05871 -14.73821 -14.48962 -14.47462 -13.95606 -13.79444 -13.72625 -13.53118 -13.42488 -13.35385 -13.13270 -13.09495 -12.62599 -12.56301 -12.23106 -12.14069 -12.01263 -11.95404 -11.70488 -11.24090 -10.70877 -10.45013 -10.41575 -9.99462 -9.32595 -4.93306 0.15909 0.85106 1.19687 1.33518 1.54023 1.67147 1.75589 2.00442 2.11155 2.13511 2.53371 3.08466 3.12780 3.30755 3.42051 3.51174 3.74615 3.83671 3.91881 4.06891 4.11671 4.15097 4.17389 4.36174 4.39308 4.45938 4.47443 4.50073 4.54690 4.54860 4.61399 4.62146 4.68638 4.73156 4.75371 4.88253 4.97829 5.06247 5.17939 5.18319 5.46277 5.66019 6.14964 6.16507 6.34024 6.48074 6.87268 6.90537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.359 6.359 3 C 0.470 3.530 4 O -0.528 6.528 5 C 0.154 3.846 6 N -0.680 5.680 7 C 0.600 3.400 8 O -0.554 6.554 9 C -0.061 4.061 10 C -0.086 4.086 11 C -0.089 4.089 12 C -0.232 4.232 13 C 0.076 3.924 14 C -0.061 4.061 15 O -0.564 6.564 16 Si 0.810 3.190 17 N -0.505 5.505 18 C -0.130 4.130 19 C 0.077 3.923 20 H 0.113 0.887 21 O -0.382 6.382 22 C 0.024 3.976 23 C -0.126 4.126 24 H 0.051 0.949 25 H 0.071 0.929 26 H 0.127 0.873 27 H 0.416 0.584 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.142 0.858 32 H 0.108 0.892 33 H 0.410 0.590 34 H -0.300 1.300 35 H -0.290 1.290 36 H 0.431 0.569 37 H 0.070 0.930 38 H 0.116 0.884 39 H 0.091 0.909 40 H 0.061 0.939 41 H 0.048 0.952 42 H 0.127 0.873 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.532 -5.997 -7.580 11.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.275 6.275 3 C 0.312 3.688 4 O -0.416 6.416 5 C 0.065 3.935 6 N -0.333 5.333 7 C 0.389 3.611 8 O -0.432 6.432 9 C -0.174 4.174 10 C -0.094 4.094 11 C -0.146 4.146 12 C -0.256 4.256 13 C -0.044 4.044 14 C -0.171 4.171 15 O -0.374 6.374 16 Si 0.715 3.285 17 N -0.102 5.102 18 C -0.168 4.168 19 C 0.018 3.982 20 H 0.131 0.869 21 O -0.301 6.301 22 C -0.072 4.072 23 C -0.164 4.164 24 H 0.070 0.930 25 H 0.090 0.910 26 H 0.145 0.855 27 H 0.254 0.746 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.160 0.840 32 H 0.126 0.874 33 H 0.262 0.738 34 H -0.228 1.228 35 H -0.218 1.218 36 H 0.272 0.728 37 H 0.089 0.911 38 H 0.135 0.865 39 H 0.110 0.890 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.145 0.855 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 5.266 -4.926 -6.246 9.540 hybrid contribution -0.580 0.576 -0.601 1.015 sum 4.686 -4.350 -6.847 9.368 Atomic orbital electron populations 1.23512 0.75082 1.05493 1.02394 1.86514 1.24754 1.33062 1.83173 1.24203 0.92189 0.81430 0.70929 1.90650 1.66986 1.37190 1.46805 1.21359 0.83354 0.88108 1.00675 1.45088 1.53292 1.25921 1.09039 1.17052 0.80015 0.82368 0.81662 1.90828 1.38885 1.52156 1.61291 1.19958 1.05079 0.98854 0.93549 1.20101 0.99531 0.96440 0.93355 1.20326 0.98347 1.00655 0.95256 1.20605 1.05601 1.01925 0.97468 1.20419 0.99716 0.94551 0.89677 1.24626 0.84275 0.95833 1.12316 1.86441 1.21128 1.38898 1.90977 0.94318 0.81643 0.79356 0.73212 1.41765 1.34050 1.22561 1.11812 1.23604 0.97858 0.95085 1.00252 1.22952 0.84773 0.96341 0.94092 0.86936 1.87902 1.16046 1.59227 1.66917 1.23017 0.86789 1.00047 0.97308 1.23887 0.98160 1.02003 0.92343 0.92990 0.91041 0.85500 0.74617 0.91207 0.90770 0.91634 0.84033 0.87436 0.73790 1.22782 1.21776 0.72804 0.91148 0.86540 0.89022 0.92024 0.93309 0.85503 0.86455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 10.56 113.37 1.20 1.31 16 2 O -0.36 -3.19 10.25 -51.47 -0.53 -3.72 16 3 C 0.47 4.69 6.38 71.24 0.45 5.15 16 4 O -0.53 -7.72 15.80 21.97 0.35 -7.37 16 5 C 0.15 0.64 1.01 3.45 0.00 0.65 16 6 N -0.68 -2.30 4.43 -427.55 -1.89 -4.19 16 7 C 0.60 6.17 7.24 86.45 0.63 6.79 16 8 O -0.55 -9.63 13.54 -4.33 -0.06 -9.69 16 9 C -0.06 -0.54 7.05 40.35 0.28 -0.25 16 10 C -0.09 -0.94 6.21 -19.56 -0.12 -1.06 16 11 C -0.09 -0.91 9.83 71.24 0.70 -0.21 16 12 C -0.23 -1.93 9.27 22.01 0.20 -1.73 16 13 C 0.08 0.29 6.50 41.34 0.27 0.56 16 14 C -0.06 0.25 3.07 71.24 0.22 0.47 16 15 O -0.56 2.54 12.86 -148.98 -1.92 0.62 16 16 Si 0.81 -3.38 30.56 68.60 2.10 -1.28 16 17 N -0.50 -1.26 5.99 -171.92 -1.03 -2.29 16 18 C -0.13 -0.63 6.73 31.12 0.21 -0.42 16 19 C 0.08 -0.15 4.36 31.12 0.14 -0.02 16 20 H 0.11 -0.69 7.88 -2.39 -0.02 -0.70 16 21 O -0.38 0.08 10.14 -148.98 -1.51 -1.43 16 22 C 0.02 -0.13 10.85 113.37 1.23 1.10 16 23 C -0.13 0.49 7.21 31.18 0.22 0.71 16 24 H 0.05 0.35 8.13 -2.39 -0.02 0.33 16 25 H 0.07 0.17 8.13 -2.39 -0.02 0.15 16 26 H 0.13 -0.21 8.14 -2.39 -0.02 -0.23 16 27 H 0.42 -1.16 7.81 -92.71 -0.72 -1.88 16 28 H 0.07 0.65 8.14 -2.39 -0.02 0.64 16 29 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.06 0.90 6.48 -2.39 -0.02 0.89 16 31 H 0.14 1.02 6.19 -2.91 -0.02 1.00 16 32 H 0.11 -1.05 7.96 -2.39 -0.02 -1.07 16 33 H 0.41 -6.28 8.74 -74.05 -0.65 -6.92 16 34 H -0.30 -1.36 7.11 99.48 0.71 -0.66 16 35 H -0.29 -0.63 7.11 99.48 0.71 0.08 16 36 H 0.43 -1.74 8.20 -92.71 -0.76 -2.50 16 37 H 0.07 0.72 7.46 -2.39 -0.02 0.70 16 38 H 0.12 0.62 7.38 -2.39 -0.02 0.60 16 39 H 0.09 -0.53 8.14 -2.39 -0.02 -0.55 16 40 H 0.06 -0.52 8.14 -2.38 -0.02 -0.54 16 41 H 0.05 -0.27 8.14 -2.39 -0.02 -0.29 16 42 H 0.13 -0.70 8.10 -2.39 -0.02 -0.72 16 43 H 0.12 -0.96 8.10 -2.38 -0.02 -0.98 16 Total: 0.00 -28.58 363.47 0.13 -28.46 By element: Atomic # 1 Polarization: -11.13 SS G_CDS: -1.02 Total: -12.15 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: 5.64 Total: 13.04 kcal Atomic # 7 Polarization: -3.56 SS G_CDS: -2.92 Total: -6.48 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -3.66 Total: -21.58 kcal Atomic # 14 Polarization: -3.38 SS G_CDS: 2.10 Total: -1.28 kcal Total: -28.58 0.13 -28.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14247462_13940406.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.730 kcal (2) G-P(sol) polarization free energy of solvation -28.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds