Wall clock time and date at job start Sun Mar 7 2021 00:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34233 * 116.99809 * 2 1 4 4 O 1.20830 * 119.99633 * 0.02562 * 3 2 1 5 5 C 1.50694 * 119.99987 * 180.02562 * 3 2 1 6 6 N 1.46499 * 112.85144 * 334.67017 * 5 3 2 7 7 C 1.34777 * 119.99665 * 50.61032 * 6 5 3 8 8 O 1.21283 * 119.99990 * 359.71991 * 7 6 5 9 9 C 1.50698 * 119.99538 * 179.72653 * 7 6 5 10 10 C 1.50698 * 109.46944 * 179.97438 * 9 7 6 11 11 C 1.34855 * 125.89349 * 85.02145 * 10 9 7 12 12 C 1.40889 * 107.41925 * 180.02562 * 11 10 9 13 13 C 1.34856 * 107.41706 * 359.97438 * 12 11 10 14 14 C 1.50700 * 125.88937 * 180.02562 * 13 12 11 15 15 O 1.42893 * 109.46944 * 119.97630 * 14 13 12 16 16 Si 1.86299 * 109.47225 * 359.97438 * 14 13 12 17 17 N 1.36336 * 108.21682 * 359.73815 * 13 12 11 18 18 C 1.53778 * 113.61426 * 203.46978 * 5 3 2 19 19 C 1.53779 * 87.08708 * 270.80274 * 18 5 3 20 20 H 1.09000 * 113.61076 * 89.19743 * 19 18 5 21 21 O 1.42896 * 113.61640 * 220.02042 * 19 18 5 22 22 C 1.42898 * 114.00121 * 209.99762 * 21 19 18 23 23 C 1.53780 * 113.61316 * 105.86857 * 5 3 2 24 24 H 1.09002 * 109.46855 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46961 * 299.99209 * 1 2 3 26 26 H 1.08998 * 109.47385 * 60.00205 * 1 2 3 27 27 H 0.97001 * 119.99790 * 230.32745 * 6 5 3 28 28 H 1.09003 * 109.47112 * 299.99065 * 9 7 6 29 29 H 1.08993 * 109.47916 * 59.99687 * 9 7 6 30 30 H 1.08001 * 126.29250 * 0.02562 * 11 10 9 31 31 H 1.07998 * 126.29172 * 180.02562 * 12 11 10 32 32 H 1.08994 * 109.46822 * 239.97485 * 14 13 12 33 33 H 0.96702 * 114.00714 * 299.99747 * 15 14 13 34 34 H 1.48506 * 110.00058 * 58.68231 * 16 14 13 35 35 H 1.48494 * 110.00003 * 179.97438 * 16 14 13 36 36 H 0.97002 * 125.63825 * 180.26426 * 17 13 12 37 37 H 1.09002 * 113.61630 * 25.35628 * 18 5 3 38 38 H 1.09005 * 113.61602 * 156.25217 * 18 5 3 39 39 H 1.09007 * 109.47037 * 59.99743 * 22 21 19 40 40 H 1.09000 * 109.47662 * 179.97438 * 22 21 19 41 41 H 1.09004 * 109.47618 * 300.00363 * 22 21 19 42 42 H 1.08998 * 113.61710 * 203.74749 * 23 5 3 43 43 H 1.09007 * 113.61355 * 334.65222 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 7 4.1985 0.0861 0.5765 7 6 3.8412 -1.1414 0.1497 8 8 2.9927 -1.2619 -0.7084 9 6 4.4961 -2.3641 0.7390 10 6 3.9226 -3.6003 0.0957 11 6 4.3354 -4.1524 -1.0633 12 6 3.5348 -5.2877 -1.2984 13 6 2.6636 -5.3865 -0.2737 14 6 1.6137 -6.4545 -0.1066 15 8 1.8485 -7.1671 1.1095 16 14 1.6955 -7.6362 -1.5446 17 7 2.9010 -4.3571 0.5882 18 6 4.1139 2.5978 0.5606 19 6 4.0334 3.1485 -0.8729 20 1 3.0731 3.6054 -1.1118 21 8 5.1446 3.9715 -1.2332 22 6 4.8294 4.9892 -2.1856 23 6 4.1607 1.6922 -1.3561 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 4.8772 0.1825 1.2628 28 1 5.5701 -2.3244 0.5570 29 1 4.3103 -2.3942 1.8126 30 1 5.1330 -3.7908 -1.6953 31 1 3.6063 -5.9565 -2.1433 32 1 0.6273 -5.9920 -0.0721 33 1 2.7097 -7.6051 1.1488 34 1 3.0457 -8.2496 -1.6217 35 1 0.6653 -8.6946 -1.3914 36 1 2.4204 -4.1891 1.4139 37 1 3.4354 3.0910 1.2566 38 1 5.1320 2.5218 0.9426 39 1 4.0623 5.6460 -1.7751 40 1 5.7247 5.5704 -2.4062 41 1 4.4604 4.5280 -3.1017 42 1 5.1915 1.3682 -1.4992 43 1 3.5197 1.4555 -2.2054 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14247462_14644196.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:16:04 Heat of formation + Delta-G solvation = -104.963999 kcal Electronic energy + Delta-G solvation = -28671.871189 eV Core-core repulsion = 24493.654691 eV Total energy + Delta-G solvation = -4178.216498 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 325.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.58700 -42.19556 -40.36204 -39.78121 -37.84783 -37.77579 -37.00874 -34.27773 -32.88885 -31.86307 -29.69518 -28.97113 -27.83294 -27.14818 -26.06410 -25.00815 -23.33525 -21.82333 -21.29645 -20.91556 -20.74130 -19.33053 -18.86049 -18.32248 -17.78260 -17.66631 -17.26990 -17.04576 -16.78581 -16.37378 -16.18602 -15.93869 -15.50543 -15.16504 -15.09440 -14.77135 -14.55436 -14.51341 -14.08736 -14.01136 -13.79547 -13.72645 -13.66611 -13.49880 -13.20237 -13.07386 -12.74937 -12.50236 -12.24216 -12.19397 -12.10031 -11.83740 -11.83553 -11.63511 -10.82877 -10.73908 -10.59897 -10.20657 -9.74132 -8.90881 -4.84945 0.85029 1.14840 1.29957 1.56955 1.67566 1.75846 1.87117 1.91691 2.19904 2.53049 2.83943 3.00388 3.23193 3.40118 3.48773 3.59621 3.75495 3.83748 3.96447 4.14369 4.15036 4.21005 4.27569 4.42354 4.48122 4.49118 4.51747 4.54884 4.56372 4.59073 4.68195 4.69417 4.74320 4.81687 4.85181 4.86477 5.25795 5.30607 5.30863 5.34687 6.04044 6.13425 6.18646 6.44975 6.51775 6.55771 6.71999 7.33092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.319 6.319 3 C 0.470 3.530 4 O -0.531 6.531 5 C 0.157 3.843 6 N -0.704 5.704 7 C 0.505 3.495 8 O -0.521 6.521 9 C -0.063 4.063 10 C 0.039 3.961 11 C -0.199 4.199 12 C -0.202 4.202 13 C -0.018 4.018 14 C -0.059 4.059 15 O -0.552 6.552 16 Si 0.788 3.212 17 N -0.535 5.535 18 C -0.105 4.105 19 C 0.063 3.937 20 H 0.090 0.910 21 O -0.384 6.384 22 C 0.022 3.978 23 C -0.138 4.138 24 H 0.114 0.886 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.426 0.574 28 H 0.144 0.856 29 H 0.125 0.875 30 H 0.140 0.860 31 H 0.148 0.852 32 H 0.118 0.882 33 H 0.387 0.613 34 H -0.282 1.282 35 H -0.299 1.299 36 H 0.418 0.582 37 H 0.090 0.910 38 H 0.140 0.860 39 H 0.048 0.952 40 H 0.101 0.899 41 H 0.045 0.955 42 H 0.124 0.876 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.093 1.334 1.807 4.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.233 6.233 3 C 0.313 3.687 4 O -0.421 6.421 5 C 0.068 3.932 6 N -0.361 5.361 7 C 0.292 3.708 8 O -0.395 6.395 9 C -0.103 4.103 10 C -0.075 4.075 11 C -0.223 4.223 12 C -0.227 4.227 13 C -0.131 4.131 14 C -0.168 4.168 15 O -0.360 6.360 16 Si 0.692 3.308 17 N -0.131 5.131 18 C -0.143 4.143 19 C 0.004 3.996 20 H 0.108 0.892 21 O -0.302 6.302 22 C -0.074 4.074 23 C -0.177 4.177 24 H 0.133 0.867 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.266 0.734 28 H 0.162 0.838 29 H 0.143 0.857 30 H 0.158 0.842 31 H 0.166 0.834 32 H 0.136 0.864 33 H 0.237 0.763 34 H -0.208 1.208 35 H -0.227 1.227 36 H 0.255 0.745 37 H 0.109 0.891 38 H 0.158 0.842 39 H 0.066 0.934 40 H 0.120 0.880 41 H 0.064 0.936 42 H 0.142 0.858 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.876 0.900 1.295 3.280 hybrid contribution -0.119 0.023 1.281 1.287 sum 2.758 0.923 2.576 3.885 Atomic orbital electron populations 1.23430 0.76790 1.04663 1.02039 1.87015 1.23128 1.31048 1.82059 1.23710 0.91604 0.81868 0.71522 1.90670 1.67051 1.37325 1.47054 1.20848 0.84943 0.88276 0.99165 1.45718 1.43555 1.03187 1.43659 1.21046 0.82339 0.84762 0.82689 1.90805 1.31282 1.86125 1.31337 1.20195 1.02632 0.85828 1.01691 1.19859 0.94136 0.96104 0.97417 1.20822 1.04540 0.98869 0.98111 1.20885 0.99516 1.01918 1.00350 1.20834 1.03039 0.94815 0.94440 1.24900 0.98740 0.96068 0.97068 1.86541 1.42115 1.69844 1.37514 0.93308 0.77509 0.77051 0.82946 1.41858 1.28550 1.21721 1.20930 1.23498 1.04342 0.89534 0.96929 1.23574 0.90504 0.89878 0.95670 0.89242 1.87881 1.33799 1.46404 1.62125 1.22994 1.02767 0.90230 0.91413 1.23922 1.03249 0.95789 0.94734 0.86729 0.91909 0.92527 0.73404 0.83821 0.85739 0.84177 0.83403 0.86376 0.76312 1.20790 1.22654 0.74472 0.89129 0.84238 0.93360 0.88044 0.93589 0.85812 0.91663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 10.56 113.37 1.20 1.29 16 2 O -0.32 -2.47 6.33 -43.47 -0.28 -2.75 16 3 C 0.47 3.31 6.98 71.23 0.50 3.81 16 4 O -0.53 -5.95 14.99 21.95 0.33 -5.62 16 5 C 0.16 0.02 1.22 3.38 0.00 0.02 16 6 N -0.70 3.59 5.32 -423.94 -2.25 1.34 16 7 C 0.51 -0.43 7.18 87.66 0.63 0.20 16 8 O -0.52 -4.24 12.58 21.06 0.26 -3.97 16 9 C -0.06 0.41 6.24 29.10 0.18 0.59 16 10 C 0.04 0.02 5.66 41.08 0.23 0.26 16 11 C -0.20 -0.67 10.76 22.14 0.24 -0.44 16 12 C -0.20 -0.69 9.37 22.14 0.21 -0.48 16 13 C -0.02 -0.04 6.50 41.08 0.27 0.22 16 14 C -0.06 -0.04 3.08 71.24 0.22 0.18 16 15 O -0.55 -1.36 12.88 -148.98 -1.92 -3.28 16 16 Si 0.79 -0.39 30.59 68.60 2.10 1.71 16 17 N -0.54 -0.50 6.07 -171.11 -1.04 -1.54 16 18 C -0.11 0.30 6.96 31.12 0.22 0.51 16 19 C 0.06 0.07 3.90 31.18 0.12 0.19 16 20 H 0.09 0.34 7.06 -2.39 -0.02 0.32 16 21 O -0.38 -0.83 10.72 -148.98 -1.60 -2.43 16 22 C 0.02 -0.03 10.85 113.37 1.23 1.20 16 23 C -0.14 -0.12 7.29 31.18 0.23 0.11 16 24 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 25 H 0.06 0.17 8.13 -2.39 -0.02 0.15 16 26 H 0.06 0.27 8.13 -2.39 -0.02 0.25 16 27 H 0.43 -5.38 8.64 -92.71 -0.80 -6.18 16 28 H 0.14 -1.68 8.14 -2.39 -0.02 -1.70 16 29 H 0.12 -1.43 8.14 -2.39 -0.02 -1.45 16 30 H 0.14 0.20 8.06 -2.91 -0.02 0.18 16 31 H 0.15 0.07 6.22 -2.91 -0.02 0.05 16 32 H 0.12 -0.05 7.96 -2.39 -0.02 -0.07 16 33 H 0.39 -1.04 8.70 -74.06 -0.64 -1.68 16 34 H -0.28 -1.01 7.11 99.48 0.71 -0.30 16 35 H -0.30 -1.85 7.11 99.48 0.71 -1.14 16 36 H 0.42 -0.86 8.96 -92.71 -0.83 -1.70 16 37 H 0.09 -0.15 7.85 -2.39 -0.02 -0.17 16 38 H 0.14 -1.12 8.13 -2.38 -0.02 -1.14 16 39 H 0.05 -0.09 8.14 -2.38 -0.02 -0.11 16 40 H 0.10 -0.40 8.14 -2.39 -0.02 -0.42 16 41 H 0.05 -0.08 8.14 -2.38 -0.02 -0.10 16 42 H 0.12 -0.19 8.14 -2.39 -0.02 -0.21 16 43 H 0.06 0.29 8.09 -2.38 -0.02 0.27 16 Total: 0.00 -23.88 363.14 -0.10 -23.98 By element: Atomic # 1 Polarization: -13.95 SS G_CDS: -1.17 Total: -15.12 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: 5.47 Total: 7.68 kcal Atomic # 7 Polarization: 3.09 SS G_CDS: -3.29 Total: -0.20 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -3.20 Total: -18.04 kcal Atomic # 14 Polarization: -0.39 SS G_CDS: 2.10 Total: 1.71 kcal Total: -23.88 -0.10 -23.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14247462_14644196.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.987 kcal (2) G-P(sol) polarization free energy of solvation -23.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds