Wall clock time and date at job start Sun Mar 7 2021 00:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34230 * 116.99832 * 2 1 4 4 O 1.20823 * 120.00413 * 0.02562 * 3 2 1 5 5 C 1.50706 * 119.99934 * 179.97438 * 3 2 1 6 6 N 1.46501 * 112.84885 * 324.06014 * 5 3 2 7 7 C 1.34772 * 120.00009 * 293.64333 * 6 5 3 8 8 O 1.21289 * 120.00327 * 354.98489 * 7 6 5 9 9 C 1.50701 * 120.00044 * 174.99045 * 7 6 5 10 10 C 1.53537 * 109.82684 * 79.99653 * 9 7 6 11 11 C 1.53039 * 108.56628 * 180.55087 * 10 9 7 12 12 C 1.50202 * 110.31585 * 310.42973 * 11 10 9 13 13 C 1.50701 * 118.54190 * 200.07296 * 12 11 10 14 14 O 1.42900 * 109.47181 * 299.97452 * 13 12 11 15 15 Si 1.86305 * 109.46819 * 179.97438 * 13 12 11 16 16 C 1.31115 * 122.90940 * 20.04808 * 12 11 10 17 17 N 1.38923 * 121.84353 * 359.85639 * 16 12 11 18 18 C 1.53780 * 113.61384 * 192.86407 * 5 3 2 19 19 C 1.53775 * 87.08181 * 270.80092 * 18 5 3 20 20 H 1.08999 * 113.61649 * 89.11842 * 19 18 5 21 21 O 1.42899 * 113.61395 * 220.02135 * 19 18 5 22 22 C 1.42900 * 113.99950 * 209.99662 * 21 19 18 23 23 C 1.53773 * 113.68955 * 95.32854 * 5 3 2 24 24 H 1.09000 * 109.46977 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46760 * 299.99844 * 1 2 3 26 26 H 1.08997 * 109.46902 * 59.99952 * 1 2 3 27 27 H 0.96997 * 120.00144 * 113.64264 * 6 5 3 28 28 H 1.09000 * 109.81335 * 319.12916 * 9 7 6 29 29 H 1.09000 * 109.61894 * 60.82599 * 10 9 7 30 30 H 1.08998 * 109.62192 * 300.28044 * 10 9 7 31 31 H 1.08996 * 109.32757 * 190.16796 * 11 10 9 32 32 H 1.09006 * 109.18572 * 70.60302 * 11 10 9 33 33 H 1.08992 * 109.47229 * 59.98001 * 13 12 11 34 34 H 0.96695 * 113.99872 * 180.02562 * 14 13 12 35 35 H 1.48507 * 109.99901 * 298.67901 * 15 13 12 36 36 H 1.48498 * 110.00147 * 59.99691 * 15 13 12 37 37 H 1.07999 * 119.07703 * 179.56753 * 16 12 11 38 38 H 0.97006 * 120.55679 * 193.05872 * 17 16 12 39 39 H 1.08997 * 113.61387 * 25.35488 * 18 5 3 40 40 H 1.09003 * 113.61048 * 156.16930 * 18 5 3 41 41 H 1.09001 * 109.47126 * 180.02562 * 22 21 19 42 42 H 1.08995 * 109.47634 * 300.00053 * 22 21 19 43 43 H 1.09000 * 109.47109 * 60.00549 * 22 21 19 44 44 H 1.09003 * 113.61434 * 203.67508 * 23 5 3 45 45 H 1.09001 * 113.61678 * 334.57638 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2749 0.0006 6 7 4.1914 0.2133 0.7934 7 6 4.0226 0.1823 2.1302 8 8 3.4304 1.0821 2.6877 9 6 4.5697 -0.9702 2.9323 10 6 6.0735 -0.7716 3.1703 11 6 6.6011 -1.9625 3.9737 12 6 5.7297 -2.2106 5.1717 13 6 6.2948 -3.0044 6.3212 14 8 6.6645 -4.3070 5.8644 15 14 5.0096 -3.1578 7.6612 16 6 4.4993 -1.7666 5.2617 17 7 3.9113 -1.0252 4.2446 18 6 4.1095 2.6790 0.3142 19 6 4.0445 2.9560 -1.1970 20 1 3.0867 3.3589 -1.5263 21 8 5.1601 3.6997 -1.6912 22 6 4.8559 4.5241 -2.8180 23 6 4.1771 1.4376 -1.4013 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 4.7267 -0.4673 0.3563 28 1 4.4003 -1.9053 2.3984 29 1 6.2369 0.1491 3.7303 30 1 6.5916 -0.7176 2.2128 31 1 7.6181 -1.7523 4.3046 32 1 6.6040 -2.8493 3.3397 33 1 7.1734 -2.4953 6.7172 34 1 7.0365 -4.8745 6.5533 35 1 4.6400 -1.8113 8.1669 36 1 3.8063 -3.8502 7.1340 37 1 3.9253 -1.9874 6.1495 38 1 3.0808 -0.5482 4.3988 39 1 3.4242 3.2913 0.9003 40 1 5.1229 2.6755 0.7156 41 1 5.7544 5.0548 -3.1330 42 1 4.4961 3.9016 -3.6372 43 1 4.0854 5.2446 -2.5436 44 1 5.2095 1.0948 -1.4702 45 1 3.5464 1.0477 -2.2003 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14247462_15413834.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:16:07 Heat of formation + Delta-G solvation = -132.914594 kcal Electronic energy + Delta-G solvation = -29350.590203 eV Core-core repulsion = 25143.850197 eV Total energy + Delta-G solvation = -4206.740006 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 327.161 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.74057 -41.28037 -40.25245 -39.39117 -37.90562 -37.44417 -37.18086 -34.67543 -33.38025 -32.99334 -29.50417 -28.15453 -27.55496 -27.17394 -25.98370 -25.34666 -23.89885 -23.17434 -21.86604 -20.90572 -19.66806 -19.26175 -18.98562 -18.23751 -18.18470 -17.89512 -17.52840 -17.36759 -17.13327 -16.56148 -16.18993 -15.93050 -15.63534 -15.44371 -15.21381 -15.02707 -14.71452 -14.58271 -14.49331 -14.17935 -13.80111 -13.72114 -13.67360 -13.64664 -13.41693 -13.13172 -12.97267 -12.63447 -12.45661 -12.40953 -12.11889 -12.04266 -12.03287 -11.88297 -11.68420 -11.40945 -11.03934 -10.65299 -10.54757 -10.09556 -8.59846 -4.92474 0.70317 1.09135 1.20182 1.39966 1.42035 1.60486 1.64195 1.97543 2.41185 2.72109 2.97072 3.08926 3.29825 3.39661 3.51467 3.54427 3.67250 3.87437 3.91342 3.96637 4.09577 4.13532 4.16656 4.35001 4.36561 4.42729 4.49815 4.50121 4.52995 4.56255 4.60469 4.62004 4.69099 4.72148 4.73730 4.84330 4.95061 5.00711 5.10813 5.15960 5.19727 5.45785 6.05372 6.09655 6.23687 6.38670 6.58678 6.87541 7.04344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.353 6.353 3 C 0.474 3.526 4 O -0.522 6.522 5 C 0.155 3.845 6 N -0.686 5.686 7 C 0.519 3.481 8 O -0.562 6.562 9 C 0.142 3.858 10 C -0.123 4.123 11 C -0.049 4.049 12 C -0.240 4.240 13 C -0.050 4.050 14 O -0.564 6.564 15 Si 0.752 3.248 16 C 0.114 3.886 17 N -0.741 5.741 18 C -0.115 4.115 19 C 0.064 3.936 20 H 0.093 0.907 21 O -0.385 6.385 22 C 0.021 3.979 23 C -0.120 4.120 24 H 0.133 0.867 25 H 0.052 0.948 26 H 0.070 0.930 27 H 0.431 0.569 28 H 0.113 0.887 29 H 0.060 0.940 30 H 0.112 0.888 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.397 0.603 35 H -0.298 1.298 36 H -0.300 1.300 37 H 0.114 0.886 38 H 0.402 0.598 39 H 0.064 0.936 40 H 0.113 0.887 41 H 0.100 0.900 42 H 0.056 0.944 43 H 0.043 0.957 44 H 0.143 0.857 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.360 -5.282 -3.118 7.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.268 6.268 3 C 0.316 3.684 4 O -0.409 6.409 5 C 0.065 3.935 6 N -0.342 5.342 7 C 0.305 3.695 8 O -0.439 6.439 9 C 0.033 3.967 10 C -0.162 4.162 11 C -0.086 4.086 12 C -0.250 4.250 13 C -0.161 4.161 14 O -0.373 6.373 15 Si 0.660 3.340 16 C -0.006 4.006 17 N -0.373 5.373 18 C -0.153 4.153 19 C 0.005 3.995 20 H 0.110 0.890 21 O -0.303 6.303 22 C -0.075 4.075 23 C -0.158 4.158 24 H 0.151 0.849 25 H 0.071 0.929 26 H 0.089 0.911 27 H 0.271 0.729 28 H 0.131 0.869 29 H 0.079 0.921 30 H 0.131 0.869 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.247 0.753 35 H -0.226 1.226 36 H -0.228 1.228 37 H 0.131 0.869 38 H 0.238 0.762 39 H 0.083 0.917 40 H 0.131 0.869 41 H 0.118 0.882 42 H 0.075 0.925 43 H 0.062 0.938 44 H 0.161 0.839 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.911 -3.973 -3.073 5.806 hybrid contribution -1.106 0.632 -0.245 1.297 sum 1.805 -3.341 -3.317 5.043 Atomic orbital electron populations 1.23581 0.74634 1.05875 1.02484 1.86491 1.24945 1.32188 1.83208 1.23642 0.91579 0.81677 0.71526 1.90680 1.66983 1.37375 1.45885 1.20968 0.84652 0.90690 0.97157 1.45512 1.52710 1.30293 1.05675 1.20979 0.78553 0.87160 0.82782 1.90766 1.43103 1.38962 1.71110 1.21100 0.94533 0.96388 0.84668 1.21926 0.91853 0.99409 1.02973 1.19964 0.98166 0.97152 0.93349 1.20524 0.94530 1.08888 1.01040 1.24469 1.06165 0.85372 1.00128 1.86437 1.85307 1.24158 1.41414 0.94724 0.77440 0.79950 0.81858 1.20160 0.93241 0.95498 0.91707 1.44256 1.27735 1.55875 1.09470 1.23456 1.02657 0.92214 0.97017 1.23536 0.90627 0.91652 0.93702 0.88952 1.87911 1.33650 1.60132 1.48639 1.23023 1.02754 0.94005 0.87710 1.23843 1.04624 0.95991 0.91341 0.84905 0.92931 0.91099 0.72908 0.86929 0.92143 0.86920 0.89921 0.90475 0.90063 0.75260 1.22624 1.22843 0.86897 0.76199 0.91704 0.86883 0.88189 0.92498 0.93807 0.83872 0.87842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.02 10.56 113.37 1.20 1.22 16 2 O -0.35 -1.63 10.42 -51.41 -0.54 -2.16 16 3 C 0.47 3.42 6.45 71.24 0.46 3.88 16 4 O -0.52 -6.87 15.12 21.97 0.33 -6.53 16 5 C 0.15 0.21 1.11 3.38 0.00 0.21 16 6 N -0.69 1.72 5.13 -423.92 -2.17 -0.46 16 7 C 0.52 1.76 6.75 87.66 0.59 2.36 16 8 O -0.56 -7.04 15.12 -3.06 -0.05 -7.09 16 9 C 0.14 0.08 3.35 44.35 0.15 0.23 16 10 C -0.12 0.21 5.48 30.79 0.17 0.38 16 11 C -0.05 -0.01 5.75 29.70 0.17 0.16 16 12 C -0.24 -0.98 5.48 -16.76 -0.09 -1.07 16 13 C -0.05 -0.01 2.82 71.24 0.20 0.19 16 14 O -0.56 0.13 12.76 -148.98 -1.90 -1.77 16 15 Si 0.75 -0.06 29.68 68.60 2.04 1.97 16 16 C 0.11 0.71 9.63 83.41 0.80 1.51 16 17 N -0.74 -4.07 5.47 -329.22 -1.80 -5.87 16 18 C -0.12 -0.52 6.15 31.12 0.19 -0.33 16 19 C 0.06 0.09 3.92 31.12 0.12 0.21 16 20 H 0.09 0.27 7.36 -2.39 -0.02 0.25 16 21 O -0.38 -1.00 10.71 -148.98 -1.60 -2.60 16 22 C 0.02 -0.04 10.85 113.37 1.23 1.19 16 23 C -0.12 0.53 7.21 31.12 0.22 0.75 16 24 H 0.13 -0.71 8.14 -2.39 -0.02 -0.73 16 25 H 0.05 0.18 8.13 -2.39 -0.02 0.16 16 26 H 0.07 -0.01 8.13 -2.39 -0.02 -0.03 16 27 H 0.43 -4.43 8.71 -92.71 -0.81 -5.23 16 28 H 0.11 -0.34 8.14 -2.39 -0.02 -0.36 16 29 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 30 H 0.11 -0.89 8.14 -2.39 -0.02 -0.91 16 31 H 0.08 -0.08 8.14 -2.39 -0.02 -0.10 16 32 H 0.08 -0.03 8.14 -2.38 -0.02 -0.04 16 33 H 0.08 -0.23 7.96 -2.39 -0.02 -0.25 16 34 H 0.40 -4.00 8.74 -74.06 -0.65 -4.65 16 35 H -0.30 -1.89 7.11 99.48 0.71 -1.19 16 36 H -0.30 -2.24 7.11 99.48 0.71 -1.54 16 37 H 0.11 0.77 4.37 -2.91 -0.01 0.76 16 38 H 0.40 2.85 8.09 -92.70 -0.75 2.10 16 39 H 0.06 0.70 7.64 -2.39 -0.02 0.68 16 40 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 41 H 0.10 -0.41 8.14 -2.39 -0.02 -0.43 16 42 H 0.06 -0.25 8.14 -2.39 -0.02 -0.27 16 43 H 0.04 -0.07 8.14 -2.39 -0.02 -0.09 16 44 H 0.14 -1.27 8.14 -2.39 -0.02 -1.29 16 45 H 0.10 -0.70 8.10 -2.39 -0.02 -0.72 16 Total: 0.00 -25.60 370.89 -1.40 -26.99 By element: Atomic # 1 Polarization: -12.25 SS G_CDS: -1.13 Total: -13.38 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: 5.42 Total: 10.89 kcal Atomic # 7 Polarization: -2.36 SS G_CDS: -3.97 Total: -6.33 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -3.75 Total: -20.15 kcal Atomic # 14 Polarization: -0.06 SS G_CDS: 2.04 Total: 1.97 kcal Total: -25.60 -1.40 -26.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14247462_15413834.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.922 kcal (2) G-P(sol) polarization free energy of solvation -25.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds