Wall clock time and date at job start Sun Mar 7 2021 00:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34234 * 116.99531 * 2 1 4 4 O 1.20822 * 120.00278 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99456 * 179.97438 * 3 2 1 6 6 N 1.46503 * 112.85234 * 25.33624 * 5 3 2 7 7 C 1.34775 * 119.99690 * 309.66372 * 6 5 3 8 8 O 1.21625 * 120.00310 * 359.97438 * 7 6 5 9 9 C 1.47262 * 119.99872 * 179.97438 * 7 6 5 10 10 C 1.36336 * 126.97046 * 179.97438 * 9 7 6 11 11 C 1.50992 * 126.78980 * 0.02961 * 10 9 7 12 12 C 1.53397 * 108.25236 * 164.30176 * 11 10 9 13 13 C 1.53152 * 109.04478 * 48.46410 * 12 11 10 14 14 C 1.53128 * 109.52965 * 290.42921 * 13 12 11 15 15 N 1.35210 * 108.66227 * 180.02562 * 10 9 7 16 16 C 1.36422 * 109.89944 * 359.97404 * 15 10 9 17 17 C 1.50699 * 125.49589 * 180.02562 * 16 15 10 18 18 O 1.42903 * 109.47152 * 30.00173 * 17 16 15 19 19 Si 1.86305 * 109.47184 * 149.99645 * 17 16 15 20 20 C 1.34493 * 109.01403 * 0.28197 * 16 15 10 21 21 C 1.53779 * 113.61734 * 254.13550 * 5 3 2 22 22 C 1.54051 * 86.99172 * 219.98341 * 21 5 3 23 23 H 1.08997 * 113.61959 * 139.97378 * 22 21 5 24 24 O 1.42896 * 113.68796 * 270.87870 * 22 21 5 25 25 C 1.42904 * 113.99475 * 247.52414 * 24 22 21 26 26 C 1.53781 * 113.61297 * 156.53237 * 5 3 2 27 27 H 1.08999 * 109.46883 * 300.00336 * 1 2 3 28 28 H 1.08995 * 109.46883 * 59.99912 * 1 2 3 29 29 H 1.08997 * 109.46816 * 179.97438 * 1 2 3 30 30 H 0.97001 * 120.00071 * 129.66302 * 6 5 3 31 31 H 1.09002 * 109.71456 * 44.60981 * 11 10 9 32 32 H 1.09003 * 109.74129 * 284.00861 * 11 10 9 33 33 H 1.09004 * 109.53832 * 288.59917 * 12 11 10 34 34 H 1.09002 * 109.54311 * 168.34250 * 12 11 10 35 35 H 1.08995 * 109.46243 * 170.40849 * 13 12 11 36 36 H 1.09000 * 109.45878 * 50.44762 * 13 12 11 37 37 H 1.08999 * 109.56560 * 291.16037 * 14 13 12 38 38 H 1.08999 * 109.56482 * 170.81590 * 14 13 12 39 39 H 1.08997 * 109.47198 * 269.99851 * 17 16 15 40 40 H 0.96700 * 114.00311 * 180.02562 * 18 17 16 41 41 H 1.48497 * 110.00233 * 300.00062 * 19 17 16 42 42 H 1.48492 * 109.99800 * 61.32455 * 19 17 16 43 43 H 1.08003 * 126.82022 * 179.72991 * 20 16 15 44 44 H 1.08999 * 113.61219 * 334.48843 * 21 5 3 45 45 H 1.09002 * 113.61722 * 105.38429 * 21 5 3 46 46 H 1.09002 * 109.46970 * 180.02562 * 25 24 22 47 47 H 1.09002 * 109.46947 * 299.99949 * 25 24 22 48 48 H 1.08997 * 109.47039 * 59.99895 * 25 24 22 49 49 H 1.08999 * 113.61238 * 254.61441 * 26 5 3 50 50 H 1.09000 * 113.61551 * 25.51396 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 7 4.1985 0.0861 -0.5766 7 6 3.8373 -1.1416 -0.1540 8 8 2.9867 -1.2626 0.7070 9 6 4.4724 -2.3367 -0.7346 10 6 4.2180 -3.6374 -0.4151 11 6 3.2262 -4.1404 0.6064 12 6 2.9935 -5.6355 0.3544 13 6 4.3483 -6.3347 0.2093 14 6 5.0111 -5.8999 -1.1008 15 7 5.0090 -4.4314 -1.1714 16 6 5.7864 -3.6667 -1.9911 17 6 6.7950 -4.1914 -2.9803 18 8 6.3766 -5.4735 -3.4527 19 14 6.9266 -3.0129 -4.4173 20 6 5.5117 -2.3688 -1.7702 21 6 4.1608 1.6921 1.3561 22 6 5.1654 2.5472 0.5605 23 1 5.3677 3.5177 1.0135 24 8 6.3559 1.8451 0.1975 25 6 7.5330 2.3182 0.8553 26 6 4.1140 2.5978 -0.5606 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 4.8771 0.1825 -1.2630 31 1 2.2856 -3.5995 0.5029 32 1 3.6255 -3.9946 1.6101 33 1 2.4163 -5.7654 -0.5611 34 1 2.4488 -6.0664 1.1945 35 1 4.2007 -7.4146 0.2007 36 1 4.9890 -6.0627 1.0482 37 1 4.4537 -6.3069 -1.9445 38 1 6.0377 -6.2650 -1.1293 39 1 7.7667 -4.2823 -2.4949 40 1 6.9801 -5.8726 -4.0942 41 1 5.6083 -2.8802 -5.0877 42 1 7.3918 -1.6846 -3.9438 43 1 5.9643 -1.5190 -2.2594 44 1 3.4780 2.2791 1.9702 45 1 4.6220 0.8693 1.9024 46 1 8.3927 1.7346 0.5259 47 1 7.6905 3.3680 0.6078 48 1 7.4137 2.2131 1.9336 49 1 4.5375 2.5057 -1.5607 50 1 3.4184 3.4320 -0.4695 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14247462_16915396.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:16:12 Heat of formation + Delta-G solvation = -104.602447 kcal Electronic energy + Delta-G solvation = -35764.317492 eV Core-core repulsion = 31146.815293 eV Total energy + Delta-G solvation = -4617.502199 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 365.176 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.86929 -42.35327 -40.47322 -39.57611 -37.84606 -37.70829 -36.91118 -36.85547 -34.07552 -33.48791 -31.27870 -29.80976 -29.06664 -27.77464 -27.18085 -26.76067 -26.19924 -24.56533 -24.09194 -22.66681 -21.66991 -21.36052 -20.45627 -19.57934 -19.07478 -18.60001 -18.22168 -17.93668 -17.52954 -17.29888 -16.96830 -16.77043 -16.37895 -16.07996 -15.84885 -15.82537 -15.50493 -15.30565 -15.12640 -15.00735 -14.87467 -14.65501 -14.46952 -14.38373 -14.27864 -13.84161 -13.64724 -13.61383 -13.27831 -13.20581 -13.03454 -12.84952 -12.58261 -12.50817 -12.21034 -12.08254 -12.02657 -12.01070 -11.83882 -11.81952 -11.79422 -11.50099 -10.81070 -10.61734 -10.54154 -10.19868 -9.67002 -9.09116 -4.95690 0.67657 0.91841 0.99528 1.39836 1.70253 1.71165 1.76467 2.08248 2.15852 2.49225 2.58677 3.04857 3.20254 3.32544 3.45399 3.53275 3.58062 3.69703 3.74226 3.78800 3.85141 4.05912 4.15125 4.19305 4.21183 4.27466 4.35247 4.37776 4.39229 4.46072 4.47250 4.53027 4.55311 4.55553 4.58202 4.66172 4.70379 4.72094 4.75928 4.77768 4.80733 4.88613 4.93931 4.98823 5.10981 5.19963 5.29282 5.33498 5.60719 5.98384 6.16532 6.17645 6.52517 6.60319 6.85877 7.31175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.323 6.323 3 C 0.463 3.537 4 O -0.533 6.533 5 C 0.153 3.847 6 N -0.692 5.692 7 C 0.588 3.412 8 O -0.534 6.534 9 C -0.251 4.251 10 C 0.105 3.895 11 C -0.050 4.050 12 C -0.124 4.124 13 C -0.135 4.135 14 C 0.112 3.888 15 N -0.424 5.424 16 C 0.026 3.974 17 C -0.050 4.050 18 O -0.563 6.563 19 Si 0.802 3.198 20 C -0.193 4.193 21 C -0.147 4.147 22 C 0.079 3.921 23 H 0.113 0.887 24 O -0.381 6.381 25 C 0.026 3.974 26 C -0.116 4.116 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.114 0.886 30 H 0.414 0.586 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.093 0.907 35 H 0.111 0.889 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.104 0.896 39 H 0.101 0.899 40 H 0.409 0.591 41 H -0.313 1.313 42 H -0.281 1.281 43 H 0.151 0.849 44 H 0.109 0.891 45 H 0.077 0.923 46 H 0.094 0.906 47 H 0.058 0.942 48 H 0.045 0.955 49 H 0.103 0.897 50 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.025 -4.246 -2.720 9.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.237 6.237 3 C 0.307 3.693 4 O -0.424 6.424 5 C 0.063 3.937 6 N -0.346 5.346 7 C 0.378 3.622 8 O -0.412 6.412 9 C -0.260 4.260 10 C -0.013 4.013 11 C -0.088 4.088 12 C -0.162 4.162 13 C -0.172 4.172 14 C -0.007 4.007 15 N -0.099 5.099 16 C -0.083 4.083 17 C -0.159 4.159 18 O -0.374 6.374 19 Si 0.706 3.294 20 C -0.217 4.217 21 C -0.186 4.186 22 C 0.021 3.979 23 H 0.131 0.869 24 O -0.300 6.300 25 C -0.070 4.070 26 C -0.154 4.154 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.133 0.867 30 H 0.251 0.749 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.083 0.917 34 H 0.111 0.889 35 H 0.129 0.871 36 H 0.089 0.911 37 H 0.105 0.895 38 H 0.123 0.877 39 H 0.119 0.881 40 H 0.261 0.739 41 H -0.241 1.241 42 H -0.208 1.208 43 H 0.168 0.832 44 H 0.127 0.873 45 H 0.096 0.904 46 H 0.113 0.887 47 H 0.077 0.923 48 H 0.064 0.936 49 H 0.121 0.879 50 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 6.485 -3.780 -2.210 7.825 hybrid contribution -0.451 0.439 0.460 0.780 sum 6.034 -3.341 -1.750 7.116 Atomic orbital electron populations 1.23433 0.77079 1.04645 1.01972 1.87085 1.23082 1.31558 1.81999 1.24228 0.92140 0.81740 0.71227 1.90632 1.67047 1.37152 1.47532 1.21256 0.83960 0.88810 0.99667 1.45239 1.43066 1.03175 1.43151 1.17428 0.80855 0.82462 0.81432 1.90768 1.31995 1.86332 1.32100 1.19880 1.06850 0.92095 1.07180 1.20618 0.95373 0.89153 0.96173 1.20447 0.96418 0.96486 0.95444 1.21703 0.97659 0.93424 1.03365 1.21958 0.96383 1.02773 0.96087 1.22234 1.04046 0.74747 0.99692 1.44083 1.29341 1.07794 1.28702 1.20240 0.99959 0.90318 0.97802 1.24538 0.96081 0.93631 1.01632 1.86377 1.53786 1.31802 1.65411 0.94693 0.81149 0.76414 0.77122 1.21783 1.01946 0.95508 1.02437 1.23942 0.98891 1.01165 0.94576 1.22979 0.84734 0.95565 0.94641 0.86892 1.87856 1.15626 1.59467 1.67021 1.22996 0.86690 1.00336 0.96987 1.23613 0.97199 0.93551 1.01022 0.92179 0.92260 0.86745 0.74853 0.89836 0.89865 0.91731 0.88890 0.87080 0.91060 0.89453 0.87734 0.88108 0.73863 1.24117 1.20759 0.83157 0.87293 0.90430 0.88730 0.92311 0.93581 0.87857 0.85368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 10.56 113.37 1.20 1.39 16 2 O -0.32 -4.68 6.30 -43.48 -0.27 -4.95 16 3 C 0.46 6.10 7.07 71.24 0.50 6.60 16 4 O -0.53 -8.40 15.79 21.98 0.35 -8.06 16 5 C 0.15 1.16 1.11 3.38 0.00 1.16 16 6 N -0.69 -5.72 4.76 -427.31 -2.03 -7.76 16 7 C 0.59 7.49 7.16 86.62 0.62 8.11 16 8 O -0.53 -8.95 11.86 20.01 0.24 -8.71 16 9 C -0.25 -2.83 6.28 -19.12 -0.12 -2.95 16 10 C 0.11 0.98 6.57 41.69 0.27 1.25 16 11 C -0.05 -0.31 5.32 30.07 0.16 -0.15 16 12 C -0.12 -0.01 5.98 30.78 0.18 0.17 16 13 C -0.13 0.36 5.92 30.69 0.18 0.54 16 14 C 0.11 -0.02 5.32 86.32 0.46 0.44 16 15 N -0.42 -2.50 3.11 -493.62 -1.54 -4.04 16 16 C 0.03 0.15 6.18 40.99 0.25 0.40 16 17 C -0.05 0.12 2.98 71.24 0.21 0.34 16 18 O -0.56 2.63 10.65 -148.98 -1.59 1.04 16 19 Si 0.80 -2.58 31.24 68.60 2.14 -0.44 16 20 C -0.19 -1.53 9.09 23.64 0.21 -1.32 16 21 C -0.15 -0.71 7.27 31.21 0.23 -0.49 16 22 C 0.08 0.02 4.38 31.21 0.14 0.16 16 23 H 0.11 -0.49 7.87 -2.39 -0.02 -0.51 16 24 O -0.38 -0.69 10.01 -148.98 -1.49 -2.18 16 25 C 0.03 -0.08 10.85 113.37 1.23 1.15 16 26 C -0.12 -0.19 7.06 31.12 0.22 0.03 16 27 H 0.06 0.50 8.13 -2.39 -0.02 0.48 16 28 H 0.06 0.46 8.13 -2.39 -0.02 0.44 16 29 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.41 2.20 7.60 -92.71 -0.70 1.49 16 31 H 0.08 0.79 7.40 -2.39 -0.02 0.77 16 32 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.06 0.07 8.12 -2.38 -0.02 0.05 16 34 H 0.09 -0.25 8.14 -2.39 -0.02 -0.27 16 35 H 0.11 -0.77 8.14 -2.39 -0.02 -0.79 16 36 H 0.07 -0.12 8.11 -2.39 -0.02 -0.14 16 37 H 0.09 0.00 8.00 -2.39 -0.02 -0.02 16 38 H 0.10 -0.27 7.69 -2.39 -0.02 -0.29 16 39 H 0.10 -0.69 7.96 -2.39 -0.02 -0.70 16 40 H 0.41 -6.20 8.74 -74.06 -0.65 -6.84 16 41 H -0.31 -2.15 7.11 99.48 0.71 -1.45 16 42 H -0.28 -0.35 6.88 99.48 0.68 0.33 16 43 H 0.15 0.78 6.38 -2.91 -0.02 0.76 16 44 H 0.11 0.41 8.09 -2.39 -0.02 0.39 16 45 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 46 H 0.09 -0.40 8.14 -2.39 -0.02 -0.42 16 47 H 0.06 -0.32 8.14 -2.39 -0.02 -0.34 16 48 H 0.05 -0.15 8.14 -2.39 -0.02 -0.17 16 49 H 0.10 -0.05 8.11 -2.39 -0.02 -0.06 16 50 H 0.13 0.16 7.38 -2.39 -0.02 0.14 16 Total: 0.00 -25.20 399.65 1.40 -23.80 By element: Atomic # 1 Polarization: -5.17 SS G_CDS: -0.36 Total: -5.53 kcal Atomic # 6 Polarization: 10.87 SS G_CDS: 5.96 Total: 16.83 kcal Atomic # 7 Polarization: -8.23 SS G_CDS: -3.57 Total: -11.79 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -2.77 Total: -22.86 kcal Atomic # 14 Polarization: -2.58 SS G_CDS: 2.14 Total: -0.44 kcal Total: -25.20 1.40 -23.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14247462_16915396.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.804 kcal (2) G-P(sol) polarization free energy of solvation -25.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds