Wall clock time and date at job start Sun Mar 7 2021 00:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34229 * 117.00465 * 2 1 4 4 O 1.20833 * 119.99590 * 0.02562 * 3 2 1 5 5 C 1.50693 * 120.00272 * 180.02562 * 3 2 1 6 6 N 1.46509 * 112.84936 * 35.51169 * 5 3 2 7 7 C 1.34776 * 119.99548 * 66.99319 * 6 5 3 8 8 O 1.21283 * 120.00311 * 354.95288 * 7 6 5 9 9 C 1.50701 * 119.99956 * 174.95094 * 7 6 5 10 10 O 1.42894 * 109.47234 * 179.97438 * 9 7 6 11 11 C 1.35904 * 117.00000 * 179.97438 * 10 9 7 12 12 C 1.38709 * 120.05712 * 179.97438 * 11 10 9 13 13 C 1.50707 * 120.02884 * 0.02562 * 12 11 10 14 14 O 1.42899 * 109.46995 * 74.72083 * 13 12 11 15 15 Si 1.86301 * 109.47288 * 194.72125 * 13 12 11 16 16 C 1.38164 * 119.94715 * 179.72484 * 12 11 10 17 17 C 1.38245 * 120.05024 * 0.28239 * 16 12 11 18 18 C 1.38287 * 120.11480 * 359.97390 * 17 16 12 19 19 C 1.38116 * 120.05611 * 359.97438 * 18 17 16 20 20 C 1.53778 * 113.69416 * 264.24651 * 5 3 2 21 21 C 1.53774 * 87.08217 * 220.00651 * 20 5 3 22 22 H 1.09004 * 113.61283 * 139.98041 * 21 20 5 23 23 O 1.42900 * 113.61428 * 270.87851 * 21 20 5 24 24 C 1.42898 * 114.00356 * 247.49985 * 23 21 20 25 25 C 1.53774 * 87.08103 * 25.43124 * 21 20 5 26 26 H 1.08994 * 109.47603 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46615 * 299.99884 * 1 2 3 28 28 H 1.08994 * 109.47370 * 59.99123 * 1 2 3 29 29 H 0.96991 * 120.00426 * 246.99563 * 6 5 3 30 30 H 1.08999 * 109.46924 * 59.99966 * 9 7 6 31 31 H 1.08997 * 109.46926 * 300.00306 * 9 7 6 32 32 H 1.08997 * 109.46774 * 314.72202 * 13 12 11 33 33 H 0.96705 * 114.00041 * 299.99963 * 14 13 12 34 34 H 1.48499 * 109.99940 * 298.67887 * 15 13 12 35 35 H 1.48494 * 109.99988 * 60.00126 * 15 13 12 36 36 H 1.07995 * 119.97488 * 180.25468 * 16 12 11 37 37 H 1.08008 * 119.93828 * 179.97438 * 17 16 12 38 38 H 1.07998 * 119.96912 * 179.97438 * 18 17 16 39 39 H 1.07995 * 120.02716 * 180.02562 * 19 18 17 40 40 H 1.09003 * 113.61327 * 334.55860 * 20 5 3 41 41 H 1.09008 * 113.61470 * 105.45168 * 20 5 3 42 42 H 1.09002 * 109.47101 * 300.00626 * 24 23 21 43 43 H 1.09000 * 109.47189 * 60.00013 * 24 23 21 44 44 H 1.08997 * 109.47457 * 180.02562 * 24 23 21 45 45 H 1.09008 * 113.61276 * 220.01506 * 25 21 20 46 46 H 1.09000 * 113.69098 * 89.13190 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 7 4.1916 0.2072 -0.7853 7 6 4.0339 0.1736 -2.1234 8 8 3.3009 0.9719 -2.6678 9 6 4.7684 -0.8557 -2.9431 10 8 4.4389 -0.6889 -4.3235 11 6 5.0218 -1.5438 -5.2046 12 6 4.7463 -1.4391 -6.5601 13 6 3.8005 -0.3764 -7.0575 14 8 4.4511 0.8953 -7.0208 15 14 3.2949 -0.7651 -8.8080 16 6 5.3445 -2.3058 -7.4544 17 6 6.2125 -3.2805 -6.9988 18 6 6.4847 -3.3904 -5.6474 19 6 5.8900 -2.5258 -4.7494 20 6 4.1766 1.4478 1.4003 21 6 5.1721 2.4291 0.7594 22 1 5.3800 3.3044 1.3750 23 8 6.3576 1.8016 0.2665 24 6 7.5422 2.1512 0.9851 25 6 4.1097 2.6764 -0.3244 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8898 29 1 4.7191 -0.4754 -0.3419 30 1 4.4765 -1.8545 -2.6184 31 1 5.8424 -0.7291 -2.8076 32 1 2.9160 -0.3506 -6.4211 33 1 4.7422 1.1629 -6.1383 34 1 4.4883 -0.7719 -9.6917 35 1 2.6171 -2.0853 -8.8596 36 1 5.1335 -2.2220 -8.5103 37 1 6.6788 -3.9573 -7.6995 38 1 7.1628 -4.1530 -5.2940 39 1 6.1033 -2.6118 -3.6942 40 1 3.5011 1.9162 2.1160 41 1 4.6439 0.5424 1.7879 42 1 7.6993 3.2281 0.9246 43 1 7.4336 1.8581 2.0293 44 1 8.3973 1.6345 0.5494 45 1 4.5231 2.7631 -1.3293 46 1 3.4153 3.4808 -0.0816 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14247462_2989392.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:16:16 Heat of formation + Delta-G solvation = -156.958831 kcal Electronic energy + Delta-G solvation = -32520.102825 eV Core-core repulsion = 27958.149240 eV Total energy + Delta-G solvation = -4561.953585 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 352.149 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.57746 -41.64467 -40.71867 -39.89991 -38.53166 -37.77125 -37.51969 -37.02337 -34.38823 -32.83821 -31.41493 -29.95349 -29.04318 -27.70945 -27.12722 -26.71530 -26.30393 -23.91390 -22.81541 -22.68460 -21.90056 -20.60003 -19.58461 -19.20292 -18.58759 -18.33880 -18.28170 -17.53587 -17.43476 -17.33198 -17.20605 -16.83852 -16.68978 -16.05610 -15.92385 -15.68852 -15.63713 -15.32848 -15.21924 -14.87621 -14.77458 -14.41493 -14.15507 -13.78798 -13.71641 -13.57577 -13.47622 -13.39681 -13.04943 -12.83111 -12.68688 -12.56837 -12.29622 -12.20691 -12.18024 -12.07994 -11.94451 -11.66613 -11.28251 -11.11933 -11.05389 -10.64561 -10.36469 -10.10374 -9.36778 -4.86068 0.08761 0.25012 0.84240 1.20927 1.31132 1.33510 1.57951 1.65981 1.86855 2.36292 2.55925 2.58493 3.09590 3.19446 3.36423 3.46806 3.51661 3.66309 3.70446 3.86292 3.91100 4.00021 4.01627 4.14677 4.15858 4.18639 4.18764 4.19909 4.37982 4.41934 4.50264 4.53036 4.54624 4.57798 4.60782 4.68725 4.74420 4.80857 4.81595 4.94559 5.12240 5.14369 5.20217 5.23313 5.37256 5.57322 6.11117 6.19746 6.30447 6.49071 6.51318 6.97677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.357 6.357 3 C 0.466 3.534 4 O -0.530 6.530 5 C 0.157 3.843 6 N -0.672 5.672 7 C 0.520 3.480 8 O -0.559 6.559 9 C 0.043 3.957 10 O -0.313 6.313 11 C 0.127 3.873 12 C -0.165 4.165 13 C -0.091 4.091 14 O -0.547 6.547 15 Si 0.811 3.189 16 C -0.104 4.104 17 C -0.155 4.155 18 C -0.074 4.074 19 C -0.201 4.201 20 C -0.126 4.126 21 C 0.077 3.923 22 H 0.110 0.890 23 O -0.378 6.378 24 C 0.024 3.976 25 C -0.132 4.132 26 H 0.131 0.869 27 H 0.069 0.931 28 H 0.048 0.952 29 H 0.429 0.571 30 H 0.125 0.875 31 H 0.128 0.872 32 H 0.065 0.935 33 H 0.369 0.631 34 H -0.279 1.279 35 H -0.264 1.264 36 H 0.124 0.876 37 H 0.147 0.853 38 H 0.161 0.839 39 H 0.165 0.835 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.045 0.955 43 H 0.059 0.941 44 H 0.095 0.905 45 H 0.070 0.930 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.101 -5.124 7.750 10.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.273 6.273 3 C 0.308 3.692 4 O -0.418 6.418 5 C 0.068 3.932 6 N -0.329 5.329 7 C 0.306 3.694 8 O -0.436 6.436 9 C -0.035 4.035 10 O -0.226 6.226 11 C 0.081 3.919 12 C -0.166 4.166 13 C -0.198 4.198 14 O -0.353 6.353 15 Si 0.711 3.289 16 C -0.121 4.121 17 C -0.173 4.173 18 C -0.091 4.091 19 C -0.220 4.220 20 C -0.164 4.164 21 C 0.019 3.981 22 H 0.127 0.873 23 O -0.296 6.296 24 C -0.072 4.072 25 C -0.170 4.170 26 H 0.149 0.851 27 H 0.088 0.912 28 H 0.067 0.933 29 H 0.269 0.731 30 H 0.143 0.857 31 H 0.146 0.854 32 H 0.084 0.916 33 H 0.217 0.783 34 H -0.206 1.206 35 H -0.190 1.190 36 H 0.142 0.858 37 H 0.165 0.835 38 H 0.178 0.822 39 H 0.182 0.818 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.064 0.936 43 H 0.078 0.922 44 H 0.114 0.886 45 H 0.089 0.911 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 4.183 -4.799 5.892 8.674 hybrid contribution 0.546 -0.332 1.669 1.787 sum 4.729 -5.131 7.562 10.289 Atomic orbital electron populations 1.23515 0.75181 1.05623 1.02234 1.86495 1.24635 1.32896 1.83283 1.24356 0.92445 0.81412 0.70989 1.90660 1.67209 1.37465 1.46481 1.21278 0.83086 0.91186 0.97691 1.45047 1.53385 1.29311 1.05157 1.20535 0.81200 0.84845 0.82790 1.90801 1.38598 1.42208 1.72023 1.22654 1.01925 0.99685 0.79225 1.86066 1.66281 1.53694 1.16583 1.18923 0.93665 0.90675 0.88604 1.19848 1.03635 1.01542 0.91568 1.25490 0.95048 0.83220 1.16002 1.86635 1.79341 1.34429 1.34915 0.92299 0.82721 0.81488 0.72406 1.21013 0.97005 0.95551 0.98555 1.21398 0.99399 0.99247 0.97261 1.21423 0.97537 0.97863 0.92324 1.21670 1.00421 0.97292 1.02584 1.23832 0.97916 1.03207 0.91449 1.22930 0.84963 0.95936 0.94286 0.87270 1.87870 1.15351 1.69128 1.57270 1.23018 0.86509 1.00566 0.97088 1.23590 0.97753 0.94343 1.01316 0.85118 0.91230 0.93289 0.73126 0.85697 0.85448 0.91642 0.78329 1.20553 1.18959 0.85847 0.83535 0.82155 0.81764 0.85902 0.86012 0.93623 0.92244 0.88611 0.91103 0.87097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.07 10.56 113.37 1.20 1.26 16 2 O -0.36 -2.17 10.41 -51.41 -0.54 -2.71 16 3 C 0.47 3.82 6.42 71.23 0.46 4.28 16 4 O -0.53 -7.63 15.66 21.94 0.34 -7.29 16 5 C 0.16 0.20 1.00 3.38 0.00 0.21 16 6 N -0.67 1.33 4.53 -423.93 -1.92 -0.59 16 7 C 0.52 2.06 7.39 87.66 0.65 2.71 16 8 O -0.56 -8.39 15.22 16.00 0.24 -8.15 16 9 C 0.04 -0.10 5.22 71.24 0.37 0.28 16 10 O -0.31 -1.94 8.55 -73.43 -0.63 -2.57 16 11 C 0.13 0.69 6.61 22.51 0.15 0.84 16 12 C -0.16 -1.42 5.28 -19.77 -0.10 -1.52 16 13 C -0.09 -0.83 2.33 71.24 0.17 -0.67 16 14 O -0.55 -6.25 12.65 -148.98 -1.89 -8.13 16 15 Si 0.81 4.12 30.41 68.60 2.09 6.20 16 16 C -0.10 -0.71 8.66 22.25 0.19 -0.52 16 17 C -0.16 -0.33 10.04 22.28 0.22 -0.11 16 18 C -0.07 0.09 10.04 22.25 0.22 0.31 16 19 C -0.20 0.14 9.04 22.36 0.20 0.34 16 20 C -0.13 0.81 7.20 31.12 0.22 1.03 16 21 C 0.08 -0.35 4.37 31.12 0.14 -0.21 16 22 H 0.11 -0.86 7.87 -2.38 -0.02 -0.88 16 23 O -0.38 1.47 10.13 -148.98 -1.51 -0.04 16 24 C 0.02 -0.19 10.85 113.37 1.23 1.04 16 25 C -0.13 -0.37 6.67 31.12 0.21 -0.16 16 26 H 0.13 -0.51 8.14 -2.39 -0.02 -0.53 16 27 H 0.07 0.09 8.13 -2.39 -0.02 0.07 16 28 H 0.05 0.28 8.13 -2.39 -0.02 0.26 16 29 H 0.43 -4.10 8.67 -92.71 -0.80 -4.90 16 30 H 0.13 -1.04 7.66 -2.39 -0.02 -1.06 16 31 H 0.13 -1.03 7.67 -2.39 -0.02 -1.05 16 32 H 0.07 0.66 7.84 -2.39 -0.02 0.64 16 33 H 0.37 3.53 8.57 -74.05 -0.63 2.89 16 34 H -0.28 -2.54 6.81 99.48 0.68 -1.87 16 35 H -0.26 -1.84 7.11 99.48 0.71 -1.14 16 36 H 0.12 0.82 4.94 -2.91 -0.01 0.80 16 37 H 0.15 -0.33 8.06 -2.91 -0.02 -0.35 16 38 H 0.16 -1.21 8.06 -2.91 -0.02 -1.23 16 39 H 0.16 -1.35 6.30 -2.91 -0.02 -1.37 16 40 H 0.12 -0.94 8.10 -2.39 -0.02 -0.96 16 41 H 0.12 -1.35 8.10 -2.38 -0.02 -1.37 16 42 H 0.05 -0.35 8.14 -2.39 -0.02 -0.37 16 43 H 0.06 -0.63 8.14 -2.39 -0.02 -0.65 16 44 H 0.10 -0.89 8.14 -2.39 -0.02 -0.91 16 45 H 0.07 0.55 7.41 -2.38 -0.02 0.53 16 46 H 0.11 0.49 7.35 -2.39 -0.02 0.47 16 Total: 0.00 -28.45 388.57 1.32 -27.13 By element: Atomic # 1 Polarization: -12.57 SS G_CDS: -0.40 Total: -12.97 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: 5.53 Total: 9.11 kcal Atomic # 7 Polarization: 1.33 SS G_CDS: -1.92 Total: -0.59 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -3.97 Total: -28.89 kcal Atomic # 14 Polarization: 4.12 SS G_CDS: 2.09 Total: 6.20 kcal Total: -28.45 1.32 -27.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14247462_2989392.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.831 kcal (2) G-P(sol) polarization free energy of solvation -28.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds