Wall clock time and date at job start Sun Mar 7 2021 00:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34234 * 116.99938 * 2 1 4 4 O 1.20822 * 119.99973 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00068 * 179.97438 * 3 2 1 6 6 N 1.46503 * 112.85041 * 23.80295 * 5 3 2 7 7 C 1.34779 * 119.99789 * 309.66797 * 6 5 3 8 8 O 1.21284 * 120.00213 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.99962 * 179.97438 * 7 6 5 10 10 O 1.42895 * 109.47498 * 180.02562 * 9 7 6 11 11 C 1.35902 * 117.00041 * 180.02562 * 10 9 7 12 12 C 1.38727 * 120.05873 * 359.72295 * 11 10 9 13 13 C 1.38142 * 119.94309 * 179.74632 * 12 11 10 14 14 C 1.38263 * 120.05718 * 0.50726 * 13 12 11 15 15 C 1.50706 * 119.94513 * 179.74551 * 14 13 12 16 16 O 1.42901 * 109.47219 * 120.02402 * 15 14 13 17 17 Si 1.86300 * 109.47064 * 0.02562 * 15 14 13 18 18 C 1.38268 * 120.10949 * 359.76955 * 14 13 12 19 19 C 1.38134 * 120.05554 * 359.97438 * 18 14 13 20 20 C 1.53784 * 113.61378 * 252.49997 * 5 3 2 21 21 C 1.53774 * 87.07946 * 220.01668 * 20 5 3 22 22 H 1.09000 * 113.61523 * 139.98145 * 21 20 5 23 23 O 1.42900 * 113.69511 * 270.87191 * 21 20 5 24 24 C 1.42901 * 114.00194 * 247.53971 * 23 21 20 25 25 C 1.53775 * 113.61501 * 155.00045 * 5 3 2 26 26 H 1.08999 * 109.47008 * 59.99921 * 1 2 3 27 27 H 1.09006 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47465 * 299.99911 * 1 2 3 29 29 H 0.96996 * 120.00095 * 129.66719 * 6 5 3 30 30 H 1.08999 * 109.47591 * 300.00532 * 9 7 6 31 31 H 1.09003 * 109.47175 * 60.00075 * 9 7 6 32 32 H 1.08005 * 120.02570 * 359.97438 * 12 11 10 33 33 H 1.08005 * 119.97314 * 180.27716 * 13 12 11 34 34 H 1.08997 * 109.46913 * 240.02569 * 15 14 13 35 35 H 0.96696 * 113.99900 * 180.02562 * 16 15 14 36 36 H 1.48503 * 109.99736 * 60.00185 * 17 15 14 37 37 H 1.48494 * 110.00028 * 181.31674 * 17 15 14 38 38 H 1.08001 * 119.96949 * 179.97438 * 18 14 13 39 39 H 1.08001 * 120.02809 * 179.97438 * 19 18 14 40 40 H 1.09001 * 113.61326 * 334.56841 * 20 5 3 41 41 H 1.09001 * 113.61595 * 105.46840 * 20 5 3 42 42 H 1.08997 * 109.47232 * 59.99645 * 24 23 21 43 43 H 1.09000 * 109.47336 * 179.97438 * 24 23 21 44 44 H 1.09002 * 109.47181 * 299.99596 * 24 23 21 45 45 H 1.08996 * 113.61430 * 254.52730 * 25 5 3 46 46 H 1.08999 * 113.61356 * 25.34717 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 7 4.1993 0.0711 -0.5438 7 6 3.8374 -1.1449 -0.0890 8 8 2.9873 -1.2426 0.7705 9 6 4.4881 -2.3833 -0.6494 10 8 3.9398 -3.5392 -0.0128 11 6 4.4223 -4.7473 -0.4059 12 6 5.3992 -4.8192 -1.3883 13 6 5.8918 -6.0482 -1.7823 14 6 5.4044 -7.2066 -1.2060 15 6 5.9395 -8.5464 -1.6419 16 8 6.5216 -9.2145 -0.5208 17 14 7.2342 -8.2995 -2.9585 18 6 4.4266 -7.1380 -0.2308 19 6 3.9346 -5.9112 0.1705 20 6 4.1587 1.7306 1.3446 21 6 5.1632 2.5627 0.5301 22 1 5.3639 3.5453 0.9570 23 8 6.3551 1.8518 0.1895 24 6 7.5302 2.3432 0.8373 25 6 4.1148 2.5823 -0.5949 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 4.8789 0.1492 -1.2315 30 1 4.3028 -2.4375 -1.7221 31 1 5.5621 -2.3432 -0.4678 32 1 5.7770 -3.9147 -1.8419 33 1 6.6556 -6.1044 -2.5439 34 1 5.1250 -9.1502 -2.0420 35 1 6.8875 -10.0851 -0.7284 36 1 8.3503 -7.4777 -2.4254 37 1 7.7471 -9.6146 -3.4194 38 1 4.0473 -8.0444 0.2175 39 1 3.1706 -5.8582 0.9319 40 1 3.4745 2.3337 1.9413 41 1 4.6204 0.9240 1.9142 42 1 7.4081 2.2673 1.9178 43 1 8.3909 1.7509 0.5268 44 1 7.6879 3.3859 0.5618 45 1 4.5411 2.4633 -1.5910 46 1 3.4180 3.4179 -0.5297 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14247462_2989410.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:16:20 Heat of formation + Delta-G solvation = -147.973482 kcal Electronic energy + Delta-G solvation = -31759.941623 eV Core-core repulsion = 27198.377672 eV Total energy + Delta-G solvation = -4561.563951 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 352.149 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.49783 -41.36954 -40.51213 -39.88583 -38.83641 -37.69687 -37.32287 -36.85454 -34.22949 -32.40698 -31.79045 -30.01712 -28.92633 -27.71262 -27.13149 -26.39193 -25.98432 -24.04846 -22.86683 -22.28919 -21.66155 -20.49505 -19.50307 -19.09739 -18.64280 -18.47632 -17.91116 -17.57380 -17.28635 -17.21804 -16.92205 -16.81223 -16.68661 -16.04299 -15.77904 -15.63831 -15.43726 -15.16626 -14.90938 -14.86060 -14.46236 -14.40505 -14.08352 -13.95868 -13.69932 -13.60999 -13.48887 -13.38235 -13.20130 -13.02446 -12.56010 -12.46475 -12.17296 -12.14262 -11.98548 -11.87767 -11.81160 -11.72587 -11.49706 -10.83373 -10.58835 -10.46441 -10.25616 -10.01491 -9.18610 -4.90418 0.29457 0.33426 0.90258 1.33926 1.42214 1.53879 1.63185 1.74186 1.97889 2.47015 2.63153 2.64969 3.07448 3.28731 3.42805 3.48276 3.58623 3.72494 3.82839 3.85080 4.00586 4.07776 4.14547 4.16910 4.21809 4.23623 4.31998 4.41519 4.44368 4.47292 4.49634 4.59824 4.60162 4.62278 4.70644 4.70943 4.74957 4.82857 4.94614 4.99022 5.18389 5.24711 5.27378 5.32254 5.52589 5.70871 6.18115 6.28271 6.46661 6.60266 6.61818 7.18058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.328 6.328 3 C 0.461 3.539 4 O -0.533 6.533 5 C 0.156 3.844 6 N -0.684 5.684 7 C 0.509 3.491 8 O -0.522 6.522 9 C 0.042 3.958 10 O -0.315 6.315 11 C 0.122 3.878 12 C -0.200 4.200 13 C -0.078 4.078 14 C -0.125 4.125 15 C -0.085 4.085 16 O -0.560 6.560 17 Si 0.767 3.233 18 C -0.062 4.062 19 C -0.165 4.165 20 C -0.152 4.152 21 C 0.079 3.921 22 H 0.109 0.891 23 O -0.375 6.375 24 C 0.025 3.975 25 C -0.112 4.112 26 H 0.064 0.936 27 H 0.113 0.887 28 H 0.056 0.944 29 H 0.427 0.573 30 H 0.125 0.875 31 H 0.122 0.878 32 H 0.165 0.835 33 H 0.151 0.849 34 H 0.092 0.908 35 H 0.394 0.606 36 H -0.295 1.295 37 H -0.290 1.290 38 H 0.134 0.866 39 H 0.129 0.871 40 H 0.104 0.896 41 H 0.078 0.922 42 H 0.042 0.958 43 H 0.098 0.902 44 H 0.056 0.944 45 H 0.114 0.886 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.158 1.836 -6.349 8.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.242 6.242 3 C 0.304 3.696 4 O -0.423 6.423 5 C 0.066 3.934 6 N -0.342 5.342 7 C 0.295 3.705 8 O -0.396 6.396 9 C -0.036 4.036 10 O -0.228 6.228 11 C 0.077 3.923 12 C -0.218 4.218 13 C -0.095 4.095 14 C -0.125 4.125 15 C -0.193 4.193 16 O -0.370 6.370 17 Si 0.673 3.327 18 C -0.080 4.080 19 C -0.184 4.184 20 C -0.191 4.191 21 C 0.020 3.980 22 H 0.126 0.874 23 O -0.294 6.294 24 C -0.071 4.071 25 C -0.149 4.149 26 H 0.083 0.917 27 H 0.131 0.869 28 H 0.074 0.926 29 H 0.267 0.733 30 H 0.143 0.857 31 H 0.139 0.861 32 H 0.183 0.817 33 H 0.168 0.832 34 H 0.110 0.890 35 H 0.244 0.756 36 H -0.223 1.223 37 H -0.217 1.217 38 H 0.152 0.848 39 H 0.147 0.853 40 H 0.122 0.878 41 H 0.097 0.903 42 H 0.061 0.939 43 H 0.116 0.884 44 H 0.075 0.925 45 H 0.133 0.867 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.791 2.314 -5.645 7.758 hybrid contribution 0.025 -0.867 1.034 1.350 sum 4.816 1.447 -4.611 6.822 Atomic orbital electron populations 1.23420 0.76856 1.04629 1.02062 1.87010 1.23274 1.31825 1.82121 1.24291 0.92295 0.81677 0.71314 1.90652 1.67092 1.37210 1.47346 1.21248 0.83593 0.88611 0.99944 1.45184 1.43164 1.02524 1.43295 1.20482 0.82405 0.84877 0.82752 1.90803 1.31153 1.86432 1.31249 1.22631 0.99763 0.81811 0.99371 1.86118 1.62157 1.12364 1.62150 1.19180 0.93939 0.84683 0.94506 1.21477 0.99918 1.00200 1.00229 1.21009 0.98486 0.91208 0.98828 1.19447 0.98938 0.94171 0.99963 1.25024 1.05085 0.93211 0.95990 1.86550 1.79035 1.36716 1.34735 0.94226 0.77212 0.79912 0.81400 1.20910 0.95012 0.96946 0.95142 1.20604 1.03848 0.90394 1.03559 1.23932 0.99055 1.01202 0.94914 1.22916 0.84815 0.95551 0.94707 0.87356 1.87808 1.15403 1.57744 1.68434 1.22994 0.86860 1.00248 0.96950 1.23593 0.96869 0.93304 1.01142 0.91708 0.86902 0.92554 0.73310 0.85715 0.86060 0.81725 0.83196 0.89030 0.75607 1.22270 1.21723 0.84829 0.85348 0.87772 0.90308 0.93895 0.88390 0.92533 0.86723 0.85755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 10.56 113.37 1.20 1.35 16 2 O -0.33 -3.52 6.35 -43.49 -0.28 -3.80 16 3 C 0.46 4.06 7.04 71.24 0.50 4.57 16 4 O -0.53 -6.60 15.81 21.98 0.35 -6.25 16 5 C 0.16 0.24 1.11 3.38 0.00 0.24 16 6 N -0.68 1.18 4.77 -423.92 -2.02 -0.84 16 7 C 0.51 1.82 7.23 87.66 0.63 2.46 16 8 O -0.52 -6.94 13.08 27.19 0.36 -6.58 16 9 C 0.04 -0.09 5.22 71.24 0.37 0.28 16 10 O -0.31 -2.01 9.67 -73.42 -0.71 -2.72 16 11 C 0.12 0.56 6.69 22.51 0.15 0.71 16 12 C -0.20 0.16 9.04 22.36 0.20 0.36 16 13 C -0.08 0.02 8.66 22.25 0.19 0.22 16 14 C -0.12 -0.34 5.42 -19.85 -0.11 -0.45 16 15 C -0.08 0.03 2.81 71.24 0.20 0.23 16 16 O -0.56 -1.54 12.74 -148.98 -1.90 -3.44 16 17 Si 0.77 -2.17 29.78 68.60 2.04 -0.12 16 18 C -0.06 -0.29 9.60 22.25 0.21 -0.08 16 19 C -0.17 -1.02 9.99 22.36 0.22 -0.79 16 20 C -0.15 -0.10 7.25 31.12 0.23 0.13 16 21 C 0.08 -0.36 4.37 31.12 0.14 -0.22 16 22 H 0.11 -0.84 7.87 -2.39 -0.02 -0.86 16 23 O -0.38 1.60 10.02 -148.98 -1.49 0.11 16 24 C 0.03 -0.18 10.85 113.37 1.23 1.05 16 25 C -0.11 0.46 7.07 31.12 0.22 0.68 16 26 H 0.06 0.30 8.13 -2.39 -0.02 0.28 16 27 H 0.11 0.33 8.14 -2.38 -0.02 0.31 16 28 H 0.06 0.39 8.13 -2.39 -0.02 0.37 16 29 H 0.43 -3.55 8.48 -92.71 -0.79 -4.34 16 30 H 0.13 -1.07 7.65 -2.39 -0.02 -1.09 16 31 H 0.12 -0.94 7.67 -2.39 -0.02 -0.96 16 32 H 0.17 -1.35 6.30 -2.91 -0.02 -1.37 16 33 H 0.15 -0.79 4.87 -2.91 -0.01 -0.80 16 34 H 0.09 -0.36 7.96 -2.39 -0.02 -0.38 16 35 H 0.39 -2.09 8.74 -74.06 -0.65 -2.74 16 36 H -0.30 -1.14 7.11 99.48 0.71 -0.43 16 37 H -0.29 -0.50 7.11 99.48 0.71 0.21 16 38 H 0.13 0.42 8.06 -2.91 -0.02 0.40 16 39 H 0.13 0.78 8.06 -2.91 -0.02 0.76 16 40 H 0.10 0.11 8.09 -2.39 -0.02 0.09 16 41 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 42 H 0.04 -0.28 8.14 -2.39 -0.02 -0.30 16 43 H 0.10 -0.85 8.14 -2.39 -0.02 -0.87 16 44 H 0.06 -0.50 8.14 -2.39 -0.02 -0.52 16 45 H 0.11 -0.90 8.11 -2.39 -0.02 -0.92 16 46 H 0.12 -0.40 7.39 -2.39 -0.02 -0.42 16 Total: 0.00 -27.82 385.57 1.58 -26.24 By element: Atomic # 1 Polarization: -12.95 SS G_CDS: -0.37 Total: -13.32 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: 5.59 Total: 10.73 kcal Atomic # 7 Polarization: 1.18 SS G_CDS: -2.02 Total: -0.84 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -3.67 Total: -22.68 kcal Atomic # 14 Polarization: -2.17 SS G_CDS: 2.04 Total: -0.12 kcal Total: -27.82 1.58 -26.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14247462_2989410.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.734 kcal (2) G-P(sol) polarization free energy of solvation -27.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds