Wall clock time and date at job start Sun Mar 7 2021 00:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34234 * 117.00086 * 2 1 4 4 O 1.20825 * 119.99853 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00024 * 179.97438 * 3 2 1 6 6 N 1.46498 * 112.85031 * 25.33501 * 5 3 2 7 7 C 1.34777 * 119.99828 * 309.38649 * 6 5 3 8 8 O 1.21283 * 120.00222 * 0.28168 * 7 6 5 9 9 C 1.50703 * 120.00290 * 180.27728 * 7 6 5 10 10 C 1.52990 * 109.47398 * 180.02562 * 9 7 6 11 11 O 1.42899 * 109.47438 * 179.97438 * 10 9 7 12 12 C 1.35903 * 117.00425 * 180.02562 * 11 10 9 13 13 C 1.38733 * 120.05420 * 359.72464 * 12 11 10 14 14 C 1.38140 * 119.94326 * 179.70211 * 13 12 11 15 15 C 1.38267 * 120.05339 * 0.59420 * 14 13 12 16 16 C 1.50703 * 119.94368 * 179.70241 * 15 14 13 17 17 O 1.42899 * 109.47346 * 119.98548 * 16 15 14 18 18 Si 1.86301 * 109.47184 * 359.97438 * 16 15 14 19 19 C 1.38272 * 120.11545 * 359.68693 * 15 14 13 20 20 C 1.38151 * 120.05022 * 0.02562 * 19 15 14 21 21 C 1.53784 * 113.61225 * 254.13490 * 5 3 2 22 22 C 1.54052 * 86.98274 * 219.98193 * 21 5 3 23 23 H 1.09006 * 113.61744 * 139.98140 * 22 21 5 24 24 O 1.42903 * 113.69283 * 270.87391 * 22 21 5 25 25 C 1.42896 * 114.00250 * 247.53404 * 24 22 21 26 26 C 1.53776 * 113.61169 * 156.52813 * 5 3 2 27 27 H 1.08999 * 109.46610 * 60.00154 * 1 2 3 28 28 H 1.09004 * 109.46627 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47096 * 300.00044 * 1 2 3 30 30 H 0.97001 * 120.00384 * 129.67096 * 6 5 3 31 31 H 1.08998 * 109.46954 * 300.00581 * 9 7 6 32 32 H 1.09002 * 109.46946 * 59.99717 * 9 7 6 33 33 H 1.08998 * 109.47508 * 300.00200 * 10 9 7 34 34 H 1.09011 * 109.47182 * 60.00188 * 10 9 7 35 35 H 1.08001 * 120.02301 * 0.02562 * 13 12 11 36 36 H 1.07996 * 119.97644 * 180.27897 * 14 13 12 37 37 H 1.09007 * 109.46986 * 239.98081 * 16 15 14 38 38 H 0.96704 * 113.99474 * 299.99676 * 17 16 15 39 39 H 1.48498 * 110.00076 * 180.02562 * 18 16 15 40 40 H 1.48504 * 109.99974 * 301.31989 * 18 16 15 41 41 H 1.07998 * 119.97322 * 180.02562 * 19 15 14 42 42 H 1.07997 * 120.02100 * 180.02562 * 20 19 15 43 43 H 1.08994 * 113.61573 * 334.48433 * 21 5 3 44 44 H 1.09000 * 113.61330 * 105.39100 * 21 5 3 45 45 H 1.08997 * 109.47217 * 179.97438 * 25 24 22 46 46 H 1.09000 * 109.47125 * 299.99982 * 25 24 22 47 47 H 1.09007 * 109.47310 * 59.99614 * 25 24 22 48 48 H 1.08999 * 113.61811 * 254.61272 * 26 5 3 49 49 H 1.09003 * 113.62161 * 25.43358 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2749 0.0006 6 7 4.1986 0.0860 -0.5766 7 6 3.8413 -1.1415 -0.1499 8 8 2.9927 -1.2621 0.7082 9 6 4.4960 -2.3643 -0.7392 10 6 3.9138 -3.6193 -0.0861 11 8 4.5342 -4.7788 -0.6453 12 6 4.1270 -5.9857 -0.1713 13 6 3.1545 -6.0524 0.8158 14 6 2.7379 -7.2806 1.2915 15 6 3.2982 -8.4423 0.7934 16 6 2.8466 -9.7807 1.3189 17 8 2.3096 -10.5571 0.2462 18 14 1.5366 -9.5274 2.6191 19 6 4.2718 -8.3784 -0.1863 20 6 4.6876 -7.1528 -0.6696 21 6 4.1608 1.6921 1.3561 22 6 5.1654 2.5471 0.5605 23 1 5.3678 3.5177 1.0135 24 8 6.3560 1.8451 0.1976 25 6 7.5331 2.3181 0.8553 26 6 4.1141 2.5976 -0.5607 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 4.8772 0.1824 -1.2629 31 1 4.3102 -2.3942 -1.8128 32 1 5.5700 -2.3245 -0.5574 33 1 4.0992 -3.5897 0.9876 34 1 2.8397 -3.6588 -0.2684 35 1 2.7198 -5.1449 1.2082 36 1 1.9776 -7.3332 2.0567 37 1 3.6964 -10.3046 1.7567 38 1 1.5487 -10.1507 -0.1908 39 1 1.0834 -10.8398 3.1458 40 1 2.0732 -8.6946 3.7254 41 1 4.7076 -9.2874 -0.5741 42 1 5.4478 -7.1034 -1.4351 43 1 3.4780 2.2791 1.9702 44 1 4.6220 0.8693 1.9024 45 1 8.3926 1.7340 0.5266 46 1 7.6906 3.3679 0.6078 47 1 7.4138 2.2130 1.9338 48 1 4.5376 2.5056 -1.5608 49 1 3.4180 3.4317 -0.4710 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14247462_4549602.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:16:23 Heat of formation + Delta-G solvation = -157.837645 kcal Electronic energy + Delta-G solvation = -33537.422939 eV Core-core repulsion = 28819.893626 eV Total energy + Delta-G solvation = -4717.529312 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 366.165 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.46147 -41.30092 -40.55796 -39.92009 -39.08869 -37.67829 -37.17784 -36.89335 -34.20842 -33.14015 -32.00304 -31.37924 -29.28494 -27.76354 -27.18807 -26.79766 -26.22594 -25.33389 -23.58850 -22.70822 -22.20373 -21.44990 -20.44933 -19.52940 -19.14047 -18.43716 -18.18320 -17.65609 -17.42157 -17.27542 -17.25130 -17.03831 -16.79666 -16.37602 -16.06861 -15.95971 -15.84249 -15.63060 -15.38777 -14.85496 -14.71358 -14.70503 -14.47739 -14.34989 -14.26703 -14.01831 -13.61313 -13.57721 -13.50998 -13.22854 -13.01259 -12.81843 -12.77850 -12.54244 -12.19594 -12.15790 -12.03093 -11.98861 -11.79367 -11.73784 -11.67667 -11.47915 -10.85282 -10.58655 -10.41487 -10.19651 -10.03431 -9.19158 -5.01168 0.29417 0.31720 0.93457 1.32614 1.59743 1.61763 1.66919 1.76814 1.94764 2.37245 2.61743 2.67408 3.08050 3.32800 3.49112 3.55609 3.62269 3.71029 3.74913 3.84725 3.92272 3.96306 4.04871 4.19975 4.23676 4.26144 4.28072 4.37051 4.41776 4.48045 4.50639 4.51546 4.58822 4.60459 4.64849 4.68265 4.70332 4.74198 4.75621 4.81701 4.83071 4.93775 4.98504 5.19355 5.29623 5.31293 5.33693 5.50459 5.73572 6.18218 6.34742 6.46749 6.62500 6.79100 7.22161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.324 6.324 3 C 0.462 3.538 4 O -0.535 6.535 5 C 0.155 3.845 6 N -0.689 5.689 7 C 0.516 3.484 8 O -0.533 6.533 9 C -0.128 4.128 10 C 0.076 3.924 11 O -0.322 6.322 12 C 0.125 3.875 13 C -0.208 4.208 14 C -0.080 4.080 15 C -0.162 4.162 16 C -0.066 4.066 17 O -0.556 6.556 18 Si 0.770 3.230 19 C -0.060 4.060 20 C -0.160 4.160 21 C -0.149 4.149 22 C 0.077 3.923 23 H 0.107 0.893 24 O -0.376 6.376 25 C 0.026 3.974 26 C -0.115 4.115 27 H 0.060 0.940 28 H 0.118 0.882 29 H 0.055 0.945 30 H 0.424 0.576 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.141 0.859 36 H 0.143 0.857 37 H 0.107 0.893 38 H 0.395 0.605 39 H -0.299 1.299 40 H -0.289 1.289 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.104 0.896 44 H 0.081 0.919 45 H 0.097 0.903 46 H 0.055 0.945 47 H 0.044 0.956 48 H 0.110 0.890 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.760 3.874 -2.496 5.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.238 6.238 3 C 0.305 3.695 4 O -0.425 6.425 5 C 0.065 3.935 6 N -0.345 5.345 7 C 0.303 3.697 8 O -0.409 6.409 9 C -0.167 4.167 10 C 0.001 3.999 11 O -0.236 6.236 12 C 0.079 3.921 13 C -0.227 4.227 14 C -0.098 4.098 15 C -0.163 4.163 16 C -0.176 4.176 17 O -0.364 6.364 18 Si 0.677 3.323 19 C -0.078 4.078 20 C -0.178 4.178 21 C -0.188 4.188 22 C 0.018 3.982 23 H 0.125 0.875 24 O -0.295 6.295 25 C -0.070 4.070 26 C -0.153 4.153 27 H 0.079 0.921 28 H 0.136 0.864 29 H 0.074 0.926 30 H 0.263 0.737 31 H 0.141 0.859 32 H 0.141 0.859 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.159 0.841 36 H 0.160 0.840 37 H 0.124 0.876 38 H 0.245 0.755 39 H -0.227 1.227 40 H -0.216 1.216 41 H 0.157 0.843 42 H 0.159 0.841 43 H 0.122 0.878 44 H 0.100 0.900 45 H 0.115 0.885 46 H 0.074 0.926 47 H 0.063 0.937 48 H 0.128 0.872 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.315 3.431 -1.176 4.303 hybrid contribution 0.393 0.249 0.149 0.488 sum 2.708 3.680 -1.027 4.683 Atomic orbital electron populations 1.23442 0.76946 1.04819 1.01908 1.87018 1.23119 1.31525 1.82107 1.24266 0.92200 0.81752 0.71265 1.90657 1.67127 1.37350 1.47379 1.21212 0.83755 0.89118 0.99430 1.45406 1.43101 1.03016 1.42996 1.20606 0.81941 0.84761 0.82362 1.90778 1.31785 1.86405 1.31949 1.21358 1.03101 0.88949 1.03332 1.22435 0.97427 0.82284 0.97796 1.85958 1.62692 1.12571 1.62396 1.19166 0.93957 0.85430 0.93510 1.21419 1.01064 0.99705 1.00509 1.20988 0.98668 0.91432 0.98691 1.20319 1.00210 0.95306 1.00430 1.25040 1.04685 0.90335 0.97552 1.86456 1.52141 1.47976 1.49804 0.93773 0.83614 0.78367 0.76579 1.20961 0.94889 0.97220 0.94720 1.20671 1.03527 0.89836 1.03775 1.23944 0.98849 1.01293 0.94708 1.22979 0.84862 0.95502 0.94814 0.87521 1.87818 1.15409 1.59279 1.66965 1.22990 0.86813 1.00295 0.96940 1.23585 0.96959 0.93525 1.01228 0.92132 0.86415 0.92596 0.73668 0.85883 0.85892 0.91675 0.91200 0.84103 0.83963 0.87603 0.75530 1.22693 1.21569 0.84345 0.84123 0.87809 0.90040 0.88484 0.92650 0.93716 0.87207 0.85907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.08 10.56 113.37 1.20 1.28 16 2 O -0.32 -2.56 6.33 -43.48 -0.28 -2.83 16 3 C 0.46 3.38 7.07 71.24 0.50 3.89 16 4 O -0.54 -6.10 15.79 21.97 0.35 -5.76 16 5 C 0.15 0.11 1.10 3.38 0.00 0.11 16 6 N -0.69 1.59 4.76 -423.93 -2.02 -0.42 16 7 C 0.52 0.32 7.18 87.66 0.63 0.95 16 8 O -0.53 -4.05 12.52 21.06 0.26 -3.78 16 9 C -0.13 0.53 6.07 29.85 0.18 0.71 16 10 C 0.08 0.01 4.03 71.98 0.29 0.30 16 11 O -0.32 -0.96 10.14 -92.46 -0.94 -1.90 16 12 C 0.12 0.49 6.69 22.51 0.15 0.64 16 13 C -0.21 -0.51 9.04 22.36 0.20 -0.30 16 14 C -0.08 -0.08 8.66 22.25 0.19 0.11 16 15 C -0.16 -0.27 5.39 -19.85 -0.11 -0.37 16 16 C -0.07 -0.04 2.82 71.24 0.20 0.16 16 17 O -0.56 -0.56 12.77 -148.98 -1.90 -2.46 16 18 Si 0.77 -0.58 29.78 68.60 2.04 1.46 16 19 C -0.06 -0.14 9.61 22.26 0.21 0.07 16 20 C -0.16 -0.48 9.99 22.37 0.22 -0.26 16 21 C -0.15 0.07 7.27 31.21 0.23 0.29 16 22 C 0.08 -0.35 4.38 31.21 0.14 -0.21 16 23 H 0.11 -0.82 7.87 -2.38 -0.02 -0.84 16 24 O -0.38 1.47 10.01 -148.98 -1.49 -0.03 16 25 C 0.03 -0.18 10.85 113.37 1.23 1.05 16 26 C -0.12 0.44 7.06 31.12 0.22 0.66 16 27 H 0.06 0.18 8.13 -2.39 -0.02 0.16 16 28 H 0.12 -0.09 8.14 -2.38 -0.02 -0.11 16 29 H 0.06 0.25 8.13 -2.39 -0.02 0.23 16 30 H 0.42 -3.05 8.47 -92.71 -0.79 -3.84 16 31 H 0.12 -0.90 8.14 -2.39 -0.02 -0.92 16 32 H 0.12 -0.87 8.14 -2.39 -0.02 -0.89 16 33 H 0.06 0.09 7.61 -2.39 -0.02 0.07 16 34 H 0.07 0.06 7.63 -2.38 -0.02 0.04 16 35 H 0.14 0.06 6.30 -2.91 -0.02 0.05 16 36 H 0.14 -0.40 4.87 -2.91 -0.01 -0.41 16 37 H 0.11 0.18 7.96 -2.38 -0.02 0.16 16 38 H 0.39 -2.71 8.70 -74.05 -0.64 -3.35 16 39 H -0.30 -1.96 7.11 99.48 0.71 -1.25 16 40 H -0.29 -1.21 7.11 99.48 0.71 -0.50 16 41 H 0.14 0.08 8.06 -2.91 -0.02 0.06 16 42 H 0.14 0.09 8.06 -2.91 -0.02 0.07 16 43 H 0.10 -0.01 8.09 -2.39 -0.02 -0.03 16 44 H 0.08 0.15 8.14 -2.39 -0.02 0.13 16 45 H 0.10 -0.81 8.14 -2.39 -0.02 -0.83 16 46 H 0.05 -0.47 8.14 -2.39 -0.02 -0.49 16 47 H 0.04 -0.30 8.14 -2.38 -0.02 -0.32 16 48 H 0.11 -0.74 8.11 -2.39 -0.02 -0.76 16 49 H 0.12 -0.35 7.38 -2.39 -0.02 -0.37 16 Total: 0.00 -21.92 406.44 1.32 -20.59 By element: Atomic # 1 Polarization: -13.54 SS G_CDS: -0.40 Total: -13.94 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: 5.69 Total: 9.07 kcal Atomic # 7 Polarization: 1.59 SS G_CDS: -2.02 Total: -0.42 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: -3.99 Total: -16.76 kcal Atomic # 14 Polarization: -0.58 SS G_CDS: 2.04 Total: 1.46 kcal Total: -21.92 1.32 -20.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14247462_4549602.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.245 kcal (2) G-P(sol) polarization free energy of solvation -21.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds