Wall clock time and date at job start Sun Mar 7 2021 00:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34226 * 117.00313 * 2 1 4 4 O 1.20823 * 119.99838 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00049 * 180.02562 * 3 2 1 6 6 N 1.46499 * 112.84769 * 35.52020 * 5 3 2 7 7 C 1.34775 * 120.00606 * 66.99007 * 6 5 3 8 8 O 1.21281 * 119.99620 * 354.94748 * 7 6 5 9 9 C 1.50687 * 120.00422 * 174.95137 * 7 6 5 10 10 C 1.53001 * 109.47633 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47554 * 180.02562 * 10 9 7 12 12 O 1.42901 * 109.47263 * 180.02562 * 11 10 9 13 13 C 1.35897 * 117.00360 * 179.97438 * 12 11 10 14 14 C 1.38701 * 120.05696 * 179.97438 * 13 12 11 15 15 C 1.38175 * 119.94443 * 180.02562 * 14 13 12 16 16 C 1.50698 * 119.97383 * 180.02562 * 15 14 13 17 17 O 1.42897 * 109.47346 * 300.00327 * 16 15 14 18 18 Si 1.86296 * 109.47291 * 179.97438 * 16 15 14 19 19 C 1.38242 * 120.05141 * 359.97438 * 15 14 13 20 20 C 1.38285 * 120.11271 * 0.04639 * 19 15 14 21 21 C 1.38114 * 120.06013 * 359.95480 * 20 19 15 22 22 C 1.53774 * 113.69173 * 264.24700 * 5 3 2 23 23 C 1.53784 * 87.08207 * 220.00975 * 22 5 3 24 24 H 1.09001 * 113.69278 * 139.99345 * 23 22 5 25 25 O 1.42896 * 113.61294 * 270.88472 * 23 22 5 26 26 C 1.42899 * 114.00199 * 247.49478 * 25 23 22 27 27 C 1.53773 * 87.07907 * 25.43438 * 23 22 5 28 28 H 1.08997 * 109.47243 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46656 * 299.99168 * 1 2 3 30 30 H 1.08995 * 109.47464 * 59.99406 * 1 2 3 31 31 H 0.97003 * 119.99718 * 246.98671 * 6 5 3 32 32 H 1.09001 * 109.47289 * 59.99611 * 9 7 6 33 33 H 1.09005 * 109.47562 * 299.99822 * 9 7 6 34 34 H 1.09008 * 109.46802 * 59.99870 * 10 9 7 35 35 H 1.09005 * 109.47061 * 300.00255 * 10 9 7 36 36 H 1.08994 * 109.47187 * 60.00111 * 11 10 9 37 37 H 1.09000 * 109.46888 * 299.99747 * 11 10 9 38 38 H 1.08004 * 120.03112 * 0.02562 * 14 13 12 39 39 H 1.09001 * 109.47050 * 59.99963 * 16 15 14 40 40 H 0.96700 * 114.00502 * 179.97438 * 17 16 15 41 41 H 1.48492 * 109.99793 * 59.99713 * 18 16 15 42 42 H 1.48502 * 110.00146 * 181.32259 * 18 16 15 43 43 H 1.08007 * 119.94171 * 180.02562 * 19 15 14 44 44 H 1.08003 * 119.96884 * 179.97438 * 20 19 15 45 45 H 1.08000 * 120.03148 * 180.29986 * 21 20 19 46 46 H 1.09003 * 113.61635 * 334.55978 * 22 5 3 47 47 H 1.09000 * 113.61602 * 105.46063 * 22 5 3 48 48 H 1.09009 * 109.47047 * 60.00021 * 26 25 23 49 49 H 1.09002 * 109.47359 * 180.02562 * 26 25 23 50 50 H 1.09000 * 109.47375 * 300.00316 * 26 25 23 51 51 H 1.09002 * 113.61598 * 220.01791 * 27 23 22 52 52 H 1.09004 * 113.69381 * 89.12863 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 7 4.1916 0.2073 -0.7854 7 6 4.0339 0.1737 -2.1235 8 8 3.3008 0.9720 -2.6678 9 6 4.7683 -0.8555 -2.9432 10 6 4.4156 -0.6769 -4.4212 11 6 5.1608 -1.7224 -5.2534 12 8 4.8317 -1.5551 -6.6340 13 6 5.4142 -2.4103 -7.5151 14 6 5.1391 -2.3051 -8.8705 15 6 5.7322 -3.1761 -9.7642 16 6 5.4342 -3.0620 -11.2371 17 8 4.0337 -3.2436 -11.4552 18 14 6.3826 -4.3693 -12.1656 19 6 6.5995 -4.1514 -9.3085 20 6 6.8750 -4.2585 -7.9577 21 6 6.2847 -3.3904 -7.0602 22 6 4.1766 1.4477 1.4003 23 6 5.1722 2.4291 0.7595 24 1 5.3811 3.3048 1.3740 25 8 6.3575 1.8017 0.2664 26 6 7.5422 2.1513 0.9850 27 6 4.1097 2.6765 -0.3243 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 4.7191 -0.4753 -0.3420 32 1 4.4765 -1.8543 -2.6185 33 1 5.8425 -0.7289 -2.8078 34 1 4.7072 0.3219 -4.7462 35 1 3.3414 -0.8038 -4.5564 36 1 4.8688 -2.7209 -4.9284 37 1 6.2349 -1.5958 -5.1184 38 1 4.4619 -1.5430 -9.2270 39 1 5.7324 -2.0758 -11.5928 40 1 3.7689 -3.1826 -12.3832 41 1 5.9856 -5.7188 -11.6899 42 1 6.1222 -4.2473 -13.6225 43 1 7.0624 -4.8310 -10.0088 44 1 7.5526 -5.0216 -7.6041 45 1 6.5040 -3.4714 -6.0058 46 1 3.5011 1.9161 2.1160 47 1 4.6440 0.5425 1.7878 48 1 7.4336 1.8582 2.0293 49 1 8.3974 1.6347 0.5492 50 1 7.6994 3.2283 0.9244 51 1 4.5230 2.7632 -1.3292 52 1 3.4152 3.4808 -0.0815 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14247462_4549616.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:16:31 Heat of formation + Delta-G solvation = -171.588647 kcal Electronic energy + Delta-G solvation = -34862.126217 eV Core-core repulsion = 29988.462997 eV Total energy + Delta-G solvation = -4873.663219 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 380.181 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -42.50836 -41.25483 -40.76226 -39.90166 -39.10825 -37.76460 -37.48880 -37.03582 -34.93149 -34.09294 -32.57791 -31.24588 -29.56364 -28.41398 -27.66483 -27.10569 -26.86339 -26.19650 -23.76062 -23.58081 -22.71199 -21.79077 -21.46356 -20.51868 -19.23300 -18.95215 -18.59928 -18.30099 -18.23581 -17.49673 -17.41012 -17.28484 -17.22935 -16.94755 -16.91147 -16.27451 -16.01856 -15.84560 -15.67094 -15.62055 -15.07825 -14.91087 -14.53821 -14.51464 -14.41151 -14.22425 -13.92687 -13.77984 -13.54735 -13.49471 -13.43593 -13.24296 -13.14371 -13.03305 -12.67515 -12.54980 -12.40356 -12.21973 -12.15230 -12.05622 -11.95982 -11.94198 -11.65751 -11.62934 -11.58934 -11.00196 -10.61230 -10.58036 -10.26020 -9.87725 -9.23255 -4.92067 0.22437 0.42050 0.89094 1.28138 1.40382 1.61527 1.74005 1.80311 1.94916 2.28225 2.59976 2.65483 3.14085 3.23996 3.36427 3.48632 3.53550 3.71879 3.76863 3.86555 3.88713 3.99051 4.11645 4.14432 4.16095 4.17976 4.22674 4.28015 4.35811 4.36616 4.42343 4.45185 4.50766 4.52836 4.56435 4.58367 4.62257 4.66222 4.69684 4.71073 4.76238 4.82280 4.96499 4.99567 5.00949 5.15003 5.21165 5.27448 5.30438 5.39500 5.47974 5.75050 6.21597 6.41168 6.44135 6.54477 6.55650 7.16035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.357 6.357 3 C 0.466 3.534 4 O -0.534 6.534 5 C 0.153 3.847 6 N -0.680 5.680 7 C 0.514 3.486 8 O -0.582 6.582 9 C -0.122 4.122 10 C -0.101 4.101 11 C 0.059 3.941 12 O -0.340 6.340 13 C 0.116 3.884 14 C -0.154 4.154 15 C -0.049 4.049 16 C -0.097 4.097 17 O -0.561 6.561 18 Si 0.781 3.219 19 C -0.162 4.162 20 C -0.071 4.071 21 C -0.205 4.205 22 C -0.128 4.128 23 C 0.078 3.922 24 H 0.108 0.892 25 O -0.376 6.376 26 C 0.024 3.976 27 C -0.131 4.131 28 H 0.131 0.869 29 H 0.068 0.932 30 H 0.047 0.953 31 H 0.427 0.573 32 H 0.130 0.870 33 H 0.132 0.868 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.115 0.885 39 H 0.091 0.909 40 H 0.395 0.605 41 H -0.295 1.295 42 H -0.286 1.286 43 H 0.147 0.853 44 H 0.163 0.837 45 H 0.157 0.843 46 H 0.120 0.880 47 H 0.120 0.880 48 H 0.058 0.942 49 H 0.097 0.903 50 H 0.045 0.955 51 H 0.070 0.930 52 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.637 -4.672 6.243 12.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.272 6.272 3 C 0.309 3.691 4 O -0.422 6.422 5 C 0.063 3.937 6 N -0.334 5.334 7 C 0.303 3.697 8 O -0.462 6.462 9 C -0.162 4.162 10 C -0.139 4.139 11 C -0.016 4.016 12 O -0.254 6.254 13 C 0.071 3.929 14 C -0.173 4.173 15 C -0.049 4.049 16 C -0.204 4.204 17 O -0.371 6.371 18 Si 0.685 3.315 19 C -0.180 4.180 20 C -0.089 4.089 21 C -0.224 4.224 22 C -0.166 4.166 23 C 0.020 3.980 24 H 0.126 0.874 25 O -0.295 6.295 26 C -0.072 4.072 27 C -0.170 4.170 28 H 0.149 0.851 29 H 0.087 0.913 30 H 0.066 0.934 31 H 0.266 0.734 32 H 0.148 0.852 33 H 0.150 0.850 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.133 0.867 39 H 0.109 0.891 40 H 0.245 0.755 41 H -0.223 1.223 42 H -0.213 1.213 43 H 0.164 0.836 44 H 0.180 0.820 45 H 0.174 0.826 46 H 0.138 0.862 47 H 0.138 0.862 48 H 0.076 0.924 49 H 0.116 0.884 50 H 0.064 0.936 51 H 0.089 0.911 52 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 8.725 -4.532 5.804 11.417 hybrid contribution -1.862 0.654 -0.367 2.007 sum 6.863 -3.878 5.437 9.576 Atomic orbital electron populations 1.23509 0.75297 1.05619 1.02138 1.86501 1.24535 1.32923 1.83277 1.24430 0.92550 0.81334 0.70803 1.90646 1.67321 1.37538 1.46696 1.21264 0.83048 0.91605 0.97749 1.45338 1.53169 1.28872 1.06071 1.21303 0.80777 0.85165 0.82437 1.90764 1.39825 1.43345 1.72218 1.21503 1.03129 0.99380 0.92162 1.21140 1.00574 0.98912 0.93251 1.22987 1.00916 1.00251 0.77422 1.86047 1.66709 1.54098 1.18553 1.19182 0.93566 0.90593 0.89587 1.20320 1.03641 1.02672 0.90679 1.19291 0.96592 0.95136 0.93874 1.25235 0.87304 1.10454 0.97441 1.86553 1.22576 1.94995 1.32935 0.93968 0.88317 0.74397 0.74823 1.21146 1.00687 0.99025 0.97112 1.21303 0.97757 0.97890 0.91957 1.21615 1.00841 0.97647 1.02286 1.23809 0.97947 1.03128 0.91673 1.22909 0.85009 0.95830 0.94268 0.87419 1.87879 1.15294 1.69109 1.57197 1.23025 0.86564 1.00549 0.97066 1.23565 0.97715 0.94445 1.01248 0.85059 0.91328 0.93374 0.73371 0.85215 0.84978 0.92168 0.92541 0.89879 0.89433 0.86731 0.89111 0.75490 1.22265 1.21344 0.83605 0.81990 0.82571 0.86201 0.86200 0.92362 0.88449 0.93640 0.91134 0.87410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.09 10.56 113.37 1.20 1.29 16 2 O -0.36 -2.56 10.41 -51.37 -0.54 -3.09 16 3 C 0.47 4.41 6.42 71.24 0.46 4.87 16 4 O -0.53 -8.39 15.66 21.97 0.34 -8.04 16 5 C 0.15 0.40 1.00 3.38 0.00 0.40 16 6 N -0.68 0.63 4.53 -423.95 -1.92 -1.29 16 7 C 0.51 1.96 7.31 87.65 0.64 2.61 16 8 O -0.58 -8.63 14.70 -3.03 -0.04 -8.68 16 9 C -0.12 0.57 5.70 29.84 0.17 0.74 16 10 C -0.10 -0.19 4.87 30.59 0.15 -0.04 16 11 C 0.06 -0.05 4.74 71.98 0.34 0.29 16 12 O -0.34 -2.71 10.14 -92.40 -0.94 -3.65 16 13 C 0.12 0.82 6.69 22.51 0.15 0.97 16 14 C -0.15 -1.42 9.55 22.37 0.21 -1.21 16 15 C -0.05 -0.28 5.42 -19.88 -0.11 -0.39 16 16 C -0.10 -0.25 2.81 71.24 0.20 -0.05 16 17 O -0.56 -3.28 12.74 -148.98 -1.90 -5.18 16 18 Si 0.78 -0.80 29.79 68.60 2.04 1.24 16 19 C -0.16 -0.27 8.67 22.28 0.19 -0.08 16 20 C -0.07 0.05 10.04 22.25 0.22 0.27 16 21 C -0.21 -0.22 9.04 22.37 0.20 -0.01 16 22 C -0.13 0.64 7.20 31.12 0.22 0.86 16 23 C 0.08 -0.26 4.38 31.12 0.14 -0.13 16 24 H 0.11 -0.73 7.87 -2.39 -0.02 -0.75 16 25 O -0.38 1.15 10.13 -148.98 -1.51 -0.36 16 26 C 0.02 -0.18 10.85 113.37 1.23 1.05 16 27 C -0.13 -0.52 6.67 31.12 0.21 -0.32 16 28 H 0.13 -0.42 8.14 -2.39 -0.02 -0.44 16 29 H 0.07 0.15 8.13 -2.39 -0.02 0.13 16 30 H 0.05 0.31 8.13 -2.39 -0.02 0.30 16 31 H 0.43 -3.43 8.67 -92.71 -0.80 -4.23 16 32 H 0.13 -1.35 8.14 -2.39 -0.02 -1.37 16 33 H 0.13 -1.35 8.14 -2.38 -0.02 -1.37 16 34 H 0.06 0.39 8.10 -2.38 -0.02 0.37 16 35 H 0.06 0.39 8.10 -2.38 -0.02 0.37 16 36 H 0.08 -0.39 7.67 -2.39 -0.02 -0.41 16 37 H 0.09 -0.47 7.66 -2.39 -0.02 -0.49 16 38 H 0.11 1.28 8.06 -2.91 -0.02 1.25 16 39 H 0.09 -0.06 7.96 -2.39 -0.02 -0.08 16 40 H 0.39 -1.08 8.74 -74.06 -0.65 -1.72 16 41 H -0.30 -1.67 7.11 99.48 0.71 -0.96 16 42 H -0.29 -0.83 7.11 99.48 0.71 -0.12 16 43 H 0.15 -0.42 4.88 -2.91 -0.01 -0.44 16 44 H 0.16 -1.19 8.06 -2.91 -0.02 -1.21 16 45 H 0.16 -0.80 6.30 -2.91 -0.02 -0.81 16 46 H 0.12 -0.74 8.10 -2.39 -0.02 -0.75 16 47 H 0.12 -1.14 8.09 -2.39 -0.02 -1.16 16 48 H 0.06 -0.58 8.14 -2.38 -0.02 -0.60 16 49 H 0.10 -0.89 8.14 -2.39 -0.02 -0.91 16 50 H 0.04 -0.33 8.14 -2.39 -0.02 -0.35 16 51 H 0.07 0.62 7.41 -2.39 -0.02 0.60 16 52 H 0.11 0.62 7.35 -2.38 -0.02 0.60 16 Total: 0.00 -33.38 432.35 0.92 -32.46 By element: Atomic # 1 Polarization: -14.10 SS G_CDS: -0.46 Total: -14.56 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: 5.83 Total: 11.14 kcal Atomic # 7 Polarization: 0.63 SS G_CDS: -1.92 Total: -1.29 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -4.58 Total: -28.99 kcal Atomic # 14 Polarization: -0.80 SS G_CDS: 2.04 Total: 1.24 kcal Total: -33.38 0.92 -32.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14247462_4549616.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.129 kcal (2) G-P(sol) polarization free energy of solvation -33.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds