Wall clock time and date at job start Sun Mar 7 2021 00:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34235 * 116.99682 * 2 1 4 4 O 1.20821 * 119.99887 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99733 * 179.97438 * 3 2 1 6 6 N 1.46501 * 112.85286 * 334.67107 * 5 3 2 7 7 C 1.34779 * 119.99697 * 50.32744 * 6 5 3 8 8 O 1.21609 * 120.00316 * 0.02562 * 7 6 5 9 9 C 1.47386 * 119.99622 * 180.02562 * 7 6 5 10 10 C 1.36416 * 127.18926 * 180.02562 * 9 7 6 11 11 C 1.50702 * 125.80269 * 0.04055 * 10 9 7 12 12 O 1.42906 * 109.47123 * 89.99809 * 11 10 9 13 13 C 1.35898 * 116.99767 * 179.97438 * 12 11 10 14 14 C 1.38727 * 120.05192 * 179.97438 * 13 12 11 15 15 C 1.38153 * 119.94111 * 179.97438 * 14 13 12 16 16 C 1.38266 * 120.05589 * 359.97438 * 15 14 13 17 17 C 1.50695 * 119.94432 * 180.02562 * 16 15 14 18 18 O 1.42898 * 109.46955 * 300.00023 * 17 16 15 19 19 Si 1.86300 * 109.47389 * 179.97438 * 17 16 15 20 20 C 1.38269 * 120.11098 * 0.27217 * 16 15 14 21 21 C 1.38139 * 120.05471 * 359.45523 * 20 16 15 22 22 O 1.33649 * 108.39422 * 180.29892 * 10 9 7 23 23 C 1.34215 * 110.90990 * 359.55512 * 22 10 9 24 24 C 1.34175 * 109.12445 * 0.45173 * 23 22 10 25 25 C 1.53783 * 113.61444 * 203.47412 * 5 3 2 26 26 C 1.53786 * 87.07658 * 270.79975 * 25 5 3 27 27 H 1.08996 * 113.61098 * 89.11840 * 26 25 5 28 28 O 1.42902 * 113.61190 * 219.93276 * 26 25 5 29 29 C 1.42902 * 113.99917 * 210.00210 * 28 26 25 30 30 C 1.53786 * 113.61306 * 105.86389 * 5 3 2 31 31 H 1.08995 * 109.47033 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47454 * 299.99840 * 1 2 3 33 33 H 1.09003 * 109.47365 * 59.99725 * 1 2 3 34 34 H 0.97000 * 120.00347 * 230.33458 * 6 5 3 35 35 H 1.08999 * 109.46729 * 329.99659 * 11 10 9 36 36 H 1.08996 * 109.46859 * 209.99781 * 11 10 9 37 37 H 1.07994 * 120.03410 * 359.96095 * 14 13 12 38 38 H 1.07999 * 119.96775 * 179.97438 * 15 14 13 39 39 H 1.09001 * 109.47545 * 59.99566 * 17 16 15 40 40 H 0.96700 * 113.99995 * 299.99800 * 18 17 16 41 41 H 1.48498 * 109.99998 * 179.97438 * 19 17 16 42 42 H 1.48498 * 109.99919 * 301.31690 * 19 17 16 43 43 H 1.07995 * 119.96720 * 179.72338 * 20 16 15 44 44 H 1.08000 * 120.02948 * 180.26825 * 21 20 16 45 45 H 1.08002 * 125.44182 * 180.16160 * 23 22 10 46 46 H 1.08004 * 127.02647 * 179.71104 * 24 23 22 47 47 H 1.08996 * 113.61134 * 25.34896 * 25 5 3 48 48 H 1.09001 * 113.61283 * 156.16853 * 25 5 3 49 49 H 1.09002 * 109.46796 * 179.97438 * 29 28 26 50 50 H 1.08996 * 109.47469 * 300.00049 * 29 28 26 51 51 H 1.09002 * 109.46842 * 60.00128 * 29 28 26 52 52 H 1.08998 * 113.61493 * 203.74633 * 30 5 3 53 53 H 1.08999 * 113.61251 * 334.65680 * 30 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 7 4.1981 0.0863 0.5786 7 6 3.8370 -1.1416 0.1561 8 8 2.9872 -1.2628 -0.7052 9 6 4.4723 -2.3374 0.7381 10 6 4.2215 -3.6406 0.4222 11 6 3.2283 -4.1238 -0.6030 12 8 3.8706 -4.2308 -1.8751 13 6 3.1091 -4.6573 -2.9167 14 6 3.6683 -4.7837 -4.1800 15 6 2.8922 -5.2180 -5.2373 16 6 1.5595 -5.5270 -5.0369 17 6 0.7154 -6.0010 -6.1918 18 8 0.6886 -4.9952 -7.2066 19 14 -1.0194 -6.3319 -5.5986 20 6 0.9986 -5.3969 -3.7798 21 6 1.7718 -4.9685 -2.7183 22 8 5.0023 -4.4161 1.1806 23 6 5.7755 -3.6735 1.9881 24 6 5.5079 -2.3751 1.7809 25 6 4.1136 2.5980 0.5618 26 6 4.0342 3.1480 -0.8722 27 1 3.0736 3.6035 -1.1124 28 8 5.1447 3.9725 -1.2313 29 6 4.8293 4.9894 -2.1844 30 6 4.1618 1.6916 -1.3547 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 4.8762 0.1829 1.2655 35 1 2.4028 -3.4153 -0.6712 36 1 2.8455 -5.1002 -0.3060 37 1 4.7092 -4.5427 -4.3370 38 1 3.3269 -5.3162 -6.2210 39 1 1.1404 -6.9179 -6.6003 40 1 0.3217 -4.1501 -6.9130 41 1 -1.8620 -6.7994 -6.7284 42 1 -1.0014 -7.3535 -4.5210 43 1 -0.0437 -5.6347 -3.6269 44 1 1.3343 -4.8712 -1.7356 45 1 6.4947 -4.0595 2.6953 46 1 5.9606 -1.5303 2.2788 47 1 3.4344 3.0915 1.2570 48 1 5.1308 2.5217 0.9460 49 1 5.7243 5.5717 -2.4039 50 1 4.4623 4.5273 -3.1008 51 1 4.0609 5.6452 -1.7751 52 1 5.1927 1.3675 -1.4968 53 1 3.5215 1.4545 -2.2043 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14247462_4549634.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:16:46 Heat of formation + Delta-G solvation = -130.415353 kcal Electronic energy + Delta-G solvation = -41660.112551 eV Core-core repulsion = 36240.411745 eV Total energy + Delta-G solvation = -5419.700806 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 418.164 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -43.68125 -42.52826 -41.28232 -40.37462 -39.81081 -39.20258 -37.77707 -37.19388 -37.01969 -34.61779 -33.66277 -32.78950 -31.96763 -31.36675 -29.30333 -28.09695 -27.72167 -27.17362 -26.30584 -25.99325 -24.55243 -23.80074 -23.15368 -22.40299 -22.06580 -20.97245 -20.67378 -19.48762 -19.30235 -18.97992 -18.28645 -18.00206 -17.66322 -17.45980 -17.19959 -17.16844 -17.00408 -16.88191 -16.70255 -16.34244 -16.10089 -15.95338 -15.83823 -15.60289 -15.42408 -15.14531 -14.99674 -14.68216 -14.50687 -14.45732 -14.34094 -14.17786 -13.81870 -13.72805 -13.61747 -13.59005 -13.50815 -13.28731 -13.08105 -13.02673 -12.52475 -12.26643 -12.23927 -12.17908 -12.07442 -12.06152 -11.79793 -11.74485 -11.64879 -10.97999 -10.85252 -10.61753 -10.42032 -10.29876 -10.05703 -9.79891 -9.22570 -5.00212 0.02070 0.27210 0.29627 0.86075 1.08911 1.32724 1.53248 1.59973 1.62441 1.89678 1.95470 2.16504 2.50613 2.65151 2.81072 2.95716 3.20744 3.38608 3.46743 3.54501 3.59615 3.66300 3.70081 3.75804 3.81554 3.92629 3.97044 3.99303 4.16231 4.23055 4.28722 4.29538 4.41422 4.43082 4.45686 4.49973 4.50357 4.51754 4.54093 4.64201 4.66146 4.66346 4.67943 4.73469 4.79837 4.85293 4.86499 4.95341 5.14401 5.17686 5.25440 5.29435 5.32092 5.47618 5.68976 5.92718 6.13278 6.27592 6.40096 6.57015 6.77247 7.14023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.321 6.321 3 C 0.473 3.527 4 O -0.526 6.526 5 C 0.157 3.843 6 N -0.695 5.695 7 C 0.582 3.418 8 O -0.518 6.518 9 C -0.216 4.216 10 C 0.041 3.959 11 C 0.135 3.865 12 O -0.322 6.322 13 C 0.127 3.873 14 C -0.163 4.163 15 C -0.059 4.059 16 C -0.161 4.161 17 C -0.070 4.070 18 O -0.557 6.557 19 Si 0.773 3.227 20 C -0.076 4.076 21 C -0.203 4.203 22 O -0.180 6.180 23 C -0.014 4.014 24 C -0.197 4.197 25 C -0.106 4.106 26 C 0.066 3.934 27 H 0.095 0.905 28 O -0.384 6.384 29 C 0.022 3.978 30 C -0.141 4.141 31 H 0.121 0.879 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.423 0.577 35 H 0.114 0.886 36 H 0.096 0.904 37 H 0.132 0.868 38 H 0.137 0.863 39 H 0.106 0.894 40 H 0.394 0.606 41 H -0.300 1.300 42 H -0.283 1.283 43 H 0.150 0.850 44 H 0.150 0.850 45 H 0.249 0.751 46 H 0.192 0.808 47 H 0.095 0.905 48 H 0.137 0.863 49 H 0.100 0.900 50 H 0.046 0.954 51 H 0.050 0.950 52 H 0.117 0.883 53 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.533 1.773 6.070 6.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.234 6.234 3 C 0.315 3.685 4 O -0.416 6.416 5 C 0.068 3.932 6 N -0.351 5.351 7 C 0.370 3.630 8 O -0.394 6.394 9 C -0.221 4.221 10 C -0.012 4.012 11 C 0.061 3.939 12 O -0.236 6.236 13 C 0.082 3.918 14 C -0.182 4.182 15 C -0.077 4.077 16 C -0.162 4.162 17 C -0.179 4.179 18 O -0.365 6.365 19 Si 0.680 3.320 20 C -0.094 4.094 21 C -0.222 4.222 22 O -0.075 6.075 23 C -0.080 4.080 24 C -0.216 4.216 25 C -0.143 4.143 26 C 0.007 3.993 27 H 0.113 0.887 28 O -0.303 6.303 29 C -0.074 4.074 30 C -0.179 4.179 31 H 0.139 0.861 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.262 0.738 35 H 0.132 0.868 36 H 0.114 0.886 37 H 0.150 0.850 38 H 0.155 0.845 39 H 0.123 0.877 40 H 0.244 0.756 41 H -0.228 1.228 42 H -0.209 1.209 43 H 0.167 0.833 44 H 0.167 0.833 45 H 0.265 0.735 46 H 0.209 0.791 47 H 0.114 0.886 48 H 0.155 0.845 49 H 0.119 0.881 50 H 0.064 0.936 51 H 0.069 0.931 52 H 0.136 0.864 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.705 0.617 5.293 5.376 hybrid contribution 0.336 -0.002 0.032 0.338 sum 1.041 0.615 5.326 5.461 Atomic orbital electron populations 1.23503 0.76361 1.05115 1.02131 1.87008 1.23520 1.30893 1.82025 1.23496 0.91225 0.82037 0.71699 1.90669 1.66818 1.37178 1.46892 1.20952 0.85436 0.87612 0.99189 1.45440 1.43228 1.03068 1.43335 1.17385 0.81260 0.82658 0.81725 1.90820 1.31428 1.86058 1.31130 1.21280 1.04062 0.92555 1.04175 1.22025 0.95535 0.88568 0.95081 1.21168 0.91386 1.03394 0.77947 1.86055 1.39097 1.81872 1.16601 1.19142 0.90569 0.94559 0.87533 1.20615 1.01487 1.05734 0.90357 1.20920 0.93012 0.95397 0.98388 1.20338 0.95493 1.04863 0.95489 1.25121 1.09361 0.93826 0.89638 1.86454 1.87135 1.25640 1.37276 0.93737 0.74636 0.86521 0.77141 1.21012 0.99932 0.96885 0.91550 1.21412 0.92854 1.06365 1.01547 1.83793 1.42486 1.38760 1.42510 1.24868 0.96539 0.90091 0.96479 1.23278 0.99356 0.99198 0.99780 1.23509 1.04356 0.89280 0.97168 1.23552 0.90702 0.89631 0.95397 0.88731 1.87887 1.33901 1.46400 1.62096 1.23002 1.02799 0.90226 0.91393 1.23934 1.03056 0.96131 0.94817 0.86074 0.92013 0.92283 0.73752 0.86827 0.88577 0.85031 0.84540 0.87663 0.75600 1.22776 1.20936 0.83338 0.83274 0.73486 0.79057 0.88619 0.84484 0.88127 0.93575 0.93137 0.86428 0.91264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.04 10.56 113.37 1.20 1.24 16 2 O -0.32 -2.27 6.30 -43.48 -0.27 -2.54 16 3 C 0.47 3.25 6.98 71.24 0.50 3.75 16 4 O -0.53 -5.43 14.99 21.98 0.33 -5.10 16 5 C 0.16 0.22 1.22 3.39 0.00 0.22 16 6 N -0.69 0.93 5.32 -427.17 -2.27 -1.34 16 7 C 0.58 2.27 7.16 86.65 0.62 2.89 16 8 O -0.52 -4.77 11.37 20.06 0.23 -4.54 16 9 C -0.22 -0.41 6.31 -18.99 -0.12 -0.53 16 10 C 0.04 0.15 7.00 25.26 0.18 0.32 16 11 C 0.14 0.42 4.74 71.24 0.34 0.76 16 12 O -0.32 -2.51 10.12 -92.40 -0.94 -3.45 16 13 C 0.13 0.80 6.69 22.51 0.15 0.95 16 14 C -0.16 -0.99 9.99 22.37 0.22 -0.76 16 15 C -0.06 -0.25 9.60 22.26 0.21 -0.03 16 16 C -0.16 -0.38 5.39 -19.85 -0.11 -0.48 16 17 C -0.07 -0.07 2.82 71.23 0.20 0.13 16 18 O -0.56 -1.06 12.77 -148.98 -1.90 -2.97 16 19 Si 0.77 -0.94 29.79 68.60 2.04 1.11 16 20 C -0.08 -0.06 8.66 22.25 0.19 0.14 16 21 C -0.20 -0.48 9.04 22.37 0.20 -0.27 16 22 O -0.18 -0.30 10.52 4.50 0.05 -0.25 16 23 C -0.01 0.07 12.03 66.89 0.80 0.88 16 24 C -0.20 0.97 10.60 23.65 0.25 1.22 16 25 C -0.11 0.23 6.96 31.12 0.22 0.44 16 26 C 0.07 0.10 3.90 31.18 0.12 0.22 16 27 H 0.09 0.31 7.05 -2.39 -0.02 0.29 16 28 O -0.38 -1.00 10.72 -148.98 -1.60 -2.60 16 29 C 0.02 -0.02 10.85 113.37 1.23 1.21 16 30 C -0.14 -0.29 7.30 31.18 0.23 -0.06 16 31 H 0.12 -0.34 8.14 -2.39 -0.02 -0.36 16 32 H 0.06 0.08 8.13 -2.39 -0.02 0.06 16 33 H 0.06 0.15 8.13 -2.39 -0.02 0.13 16 34 H 0.42 -3.33 7.81 -92.71 -0.72 -4.06 16 35 H 0.11 0.38 6.01 -2.39 -0.01 0.36 16 36 H 0.10 -0.10 7.66 -2.39 -0.02 -0.12 16 37 H 0.13 0.66 8.06 -2.91 -0.02 0.64 16 38 H 0.14 0.36 8.06 -2.91 -0.02 0.34 16 39 H 0.11 0.22 7.96 -2.39 -0.02 0.20 16 40 H 0.39 -2.26 8.70 -74.06 -0.64 -2.91 16 41 H -0.30 -1.88 7.11 99.48 0.71 -1.17 16 42 H -0.28 -0.81 7.11 99.48 0.71 -0.10 16 43 H 0.15 -0.62 4.87 -2.91 -0.01 -0.63 16 44 H 0.15 -0.31 6.30 -2.91 -0.02 -0.33 16 45 H 0.25 -3.43 8.06 -2.91 -0.02 -3.45 16 46 H 0.19 -2.32 7.74 -2.91 -0.02 -2.34 16 47 H 0.10 -0.16 7.84 -2.39 -0.02 -0.18 16 48 H 0.14 -0.94 8.13 -2.39 -0.02 -0.96 16 49 H 0.10 -0.37 8.14 -2.39 -0.02 -0.39 16 50 H 0.05 -0.07 8.14 -2.39 -0.02 -0.09 16 51 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 52 H 0.12 0.11 8.14 -2.39 -0.02 0.09 16 53 H 0.07 0.34 8.09 -2.39 -0.02 0.32 16 Total: 0.00 -26.18 443.21 1.97 -24.21 By element: Atomic # 1 Polarization: -14.42 SS G_CDS: -0.34 Total: -14.77 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: 6.64 Total: 12.23 kcal Atomic # 7 Polarization: 0.93 SS G_CDS: -2.27 Total: -1.34 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -4.10 Total: -21.44 kcal Atomic # 14 Polarization: -0.94 SS G_CDS: 2.04 Total: 1.11 kcal Total: -26.18 1.97 -24.21 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14247462_4549634.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.201 kcal (2) G-P(sol) polarization free energy of solvation -26.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds