Wall clock time and date at job start Sun Mar 7 2021 00:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34234 * 116.99938 * 2 1 4 4 O 1.20822 * 119.99973 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00068 * 179.97438 * 3 2 1 6 6 N 1.46501 * 112.84940 * 334.66794 * 5 3 2 7 7 C 1.34778 * 120.00316 * 50.32926 * 6 5 3 8 8 O 1.21282 * 119.99685 * 0.02562 * 7 6 5 9 9 C 1.50693 * 120.00483 * 179.97438 * 7 6 5 10 10 O 1.42901 * 109.47714 * 180.02562 * 9 7 6 11 11 C 1.35897 * 117.00325 * 180.02562 * 10 9 7 12 12 C 1.38714 * 120.05616 * 180.02562 * 11 10 9 13 13 N 1.48010 * 120.02473 * 359.97438 * 12 11 10 14 14 O 1.21798 * 119.99901 * 179.97438 * 13 12 11 15 15 O 1.21801 * 120.00373 * 0.02562 * 13 12 11 16 16 C 1.38164 * 119.94440 * 179.97438 * 12 11 10 17 17 C 1.38235 * 120.05519 * 359.97438 * 16 12 11 18 18 C 1.50707 * 119.94203 * 180.02562 * 17 16 12 19 19 O 1.42894 * 109.47267 * 300.00275 * 18 17 16 20 20 Si 1.86297 * 109.46800 * 180.02562 * 18 17 16 21 21 C 1.38288 * 120.11356 * 0.02562 * 17 16 12 22 22 C 1.38122 * 120.05650 * 359.74489 * 21 17 16 23 23 C 1.53780 * 113.61562 * 203.47461 * 5 3 2 24 24 C 1.53786 * 87.07690 * 270.88366 * 23 5 3 25 25 H 1.08990 * 113.61429 * 89.20227 * 24 23 5 26 26 O 1.42898 * 113.61243 * 220.01906 * 24 23 5 27 27 C 1.42900 * 114.00371 * 209.99977 * 26 24 23 28 28 C 1.53779 * 113.61439 * 105.86187 * 5 3 2 29 29 H 1.09006 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47465 * 299.99911 * 1 2 3 31 31 H 1.08999 * 109.47008 * 59.99921 * 1 2 3 32 32 H 0.96997 * 120.00328 * 230.33563 * 6 5 3 33 33 H 1.08999 * 109.47427 * 300.00806 * 9 7 6 34 34 H 1.09008 * 109.47202 * 60.00413 * 9 7 6 35 35 H 1.07997 * 119.96707 * 179.97438 * 16 12 11 36 36 H 1.09004 * 109.46781 * 60.00631 * 18 17 16 37 37 H 0.96697 * 113.99955 * 299.99985 * 19 18 17 38 38 H 1.48501 * 109.99956 * 58.68590 * 20 18 17 39 39 H 1.48508 * 109.99825 * 180.02562 * 20 18 17 40 40 H 1.08004 * 119.97318 * 180.02562 * 21 17 16 41 41 H 1.07993 * 120.02801 * 180.27674 * 22 21 17 42 42 H 1.08996 * 113.61584 * 25.42715 * 23 5 3 43 43 H 1.08998 * 113.61599 * 156.33550 * 23 5 3 44 44 H 1.08998 * 109.46787 * 59.99712 * 27 26 24 45 45 H 1.08996 * 109.47343 * 179.97438 * 27 26 24 46 46 H 1.08993 * 109.46942 * 300.00214 * 27 26 24 47 47 H 1.09001 * 113.61353 * 203.66271 * 28 5 3 48 48 H 1.08994 * 113.61412 * 334.56953 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 7 4.1981 0.0863 0.5787 7 6 3.8371 -1.1416 0.1563 8 8 2.9896 -1.2625 -0.7027 9 6 4.4873 -2.3643 0.7506 10 8 3.9410 -3.5370 0.1437 11 6 4.4226 -4.7341 0.5703 12 6 3.9372 -5.9129 0.0237 13 7 2.8934 -5.8685 -1.0247 14 8 2.4679 -6.9038 -1.5047 15 8 2.4607 -4.7965 -1.4083 16 6 4.4289 -7.1286 0.4588 17 6 5.4041 -7.1707 1.4377 18 6 5.9390 -8.4982 1.9100 19 8 4.8704 -9.2765 2.4524 20 14 7.2297 -8.2157 3.2233 21 6 5.8896 -5.9969 1.9842 22 6 5.4048 -4.7789 1.5493 23 6 4.1136 2.5979 0.5618 24 6 4.0321 3.1486 -0.8718 25 1 3.0715 3.6051 -1.1102 26 8 5.1427 3.9723 -1.2325 27 6 4.8266 4.9900 -2.1847 28 6 4.1618 1.6915 -1.3546 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 4.8761 0.1829 1.2656 33 1 5.5616 -2.3288 0.5696 34 1 4.3004 -2.3898 1.8242 35 1 4.0509 -8.0467 0.0338 36 1 6.3855 -9.0297 1.0696 37 1 4.4261 -8.8637 3.2055 38 1 6.6409 -7.4641 4.3607 39 1 7.7655 -9.5172 3.6970 40 1 6.6519 -6.0324 2.7486 41 1 5.7876 -3.8623 1.9733 42 1 3.4351 3.0908 1.2580 43 1 5.1318 2.5224 0.9433 44 1 4.0594 5.6462 -1.7738 45 1 5.7216 5.5715 -2.4055 46 1 4.4575 4.5285 -3.1005 47 1 5.1933 1.3686 -1.4961 48 1 3.5223 1.4531 -2.2044 There are 73 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 73 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14247462_4549638.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:16:55 Heat of formation + Delta-G solvation = -146.423309 kcal Electronic energy + Delta-G solvation = -38503.372138 eV Core-core repulsion = 33110.858972 eV Total energy + Delta-G solvation = -5392.513166 eV No. of doubly occupied orbitals = 73 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 397.143 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -43.25841 -42.58907 -41.65033 -40.50146 -40.00742 -39.26662 -37.79509 -37.59718 -37.47022 -36.99113 -34.37910 -33.43294 -32.22779 -30.19786 -29.00133 -27.82526 -27.78606 -27.15260 -26.60151 -25.81541 -24.13999 -23.30563 -22.76647 -21.59990 -20.78718 -20.50308 -19.74133 -19.45543 -18.98331 -18.60299 -18.41542 -18.24834 -17.94830 -17.74928 -17.38660 -17.33282 -16.95154 -16.90903 -16.34715 -16.20658 -16.10127 -15.67882 -15.51402 -15.29966 -15.15742 -14.79896 -14.66057 -14.52015 -13.98295 -13.86183 -13.73782 -13.66547 -13.55958 -13.28472 -13.18685 -13.06713 -12.66962 -12.53490 -12.37176 -12.35608 -12.25582 -12.24223 -12.17448 -12.12664 -11.84661 -11.79751 -11.64348 -10.82490 -10.80643 -10.73884 -10.60679 -10.31061 -9.76276 -4.90562 -1.27716 -0.20954 0.19280 0.38810 0.81227 1.21178 1.28042 1.51740 1.61870 1.62256 2.03807 2.07819 2.20669 2.81357 2.95905 3.14145 3.19653 3.28891 3.37213 3.47536 3.47972 3.56818 3.69410 3.74342 3.80007 3.97869 4.01194 4.09271 4.14306 4.21254 4.32257 4.41965 4.42186 4.48606 4.51975 4.56936 4.58145 4.60311 4.67204 4.68175 4.74237 4.80537 4.86927 4.87281 5.10750 5.17062 5.22931 5.29423 5.79418 6.13025 6.42619 6.45379 6.46117 6.54017 7.20458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.322 6.322 3 C 0.467 3.533 4 O -0.529 6.529 5 C 0.159 3.841 6 N -0.693 5.693 7 C 0.501 3.499 8 O -0.512 6.512 9 C 0.028 3.972 10 O -0.288 6.288 11 C 0.197 3.803 12 C -0.105 4.105 13 N 0.034 4.966 14 O -0.212 6.212 15 O -0.165 6.165 16 C -0.005 4.005 17 C -0.148 4.148 18 C -0.091 4.091 19 O -0.551 6.551 20 Si 0.790 3.210 21 C -0.005 4.005 22 C -0.188 4.188 23 C -0.100 4.100 24 C 0.062 3.938 25 H 0.089 0.911 26 O -0.382 6.382 27 C 0.022 3.978 28 C -0.142 4.142 29 H 0.110 0.890 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.432 0.568 33 H 0.149 0.851 34 H 0.141 0.859 35 H 0.148 0.852 36 H 0.126 0.874 37 H 0.389 0.611 38 H -0.261 1.261 39 H -0.311 1.311 40 H 0.188 0.812 41 H 0.208 0.792 42 H 0.093 0.907 43 H 0.146 0.854 44 H 0.048 0.952 45 H 0.102 0.898 46 H 0.044 0.956 47 H 0.128 0.872 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.068 3.940 9.319 15.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.236 6.236 3 C 0.310 3.690 4 O -0.418 6.418 5 C 0.070 3.930 6 N -0.353 5.353 7 C 0.286 3.714 8 O -0.385 6.385 9 C -0.048 4.048 10 O -0.198 6.198 11 C 0.147 3.853 12 C -0.190 4.190 13 N 0.544 4.456 14 O -0.417 6.417 15 O -0.381 6.381 16 C -0.024 4.024 17 C -0.150 4.150 18 C -0.198 4.198 19 O -0.360 6.360 20 Si 0.692 3.308 21 C -0.022 4.022 22 C -0.207 4.207 23 C -0.138 4.138 24 C 0.003 3.997 25 H 0.107 0.893 26 O -0.300 6.300 27 C -0.074 4.074 28 C -0.180 4.180 29 H 0.128 0.872 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.273 0.727 33 H 0.166 0.834 34 H 0.159 0.841 35 H 0.166 0.834 36 H 0.144 0.856 37 H 0.238 0.762 38 H -0.186 1.186 39 H -0.239 1.239 40 H 0.205 0.795 41 H 0.225 0.775 42 H 0.111 0.889 43 H 0.164 0.836 44 H 0.067 0.933 45 H 0.120 0.880 46 H 0.062 0.938 47 H 0.146 0.854 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 12.084 3.538 9.420 15.725 hybrid contribution -2.483 -0.327 -0.427 2.541 sum 9.601 3.211 8.992 13.541 Atomic orbital electron populations 1.23424 0.76679 1.04573 1.02177 1.87016 1.23288 1.31244 1.82053 1.23759 0.91740 0.81850 0.71671 1.90670 1.67033 1.37220 1.46913 1.20894 0.84754 0.88028 0.99338 1.45404 1.43634 1.02438 1.43808 1.20551 0.82733 0.84902 0.83226 1.90902 1.30736 1.85906 1.30946 1.23059 1.01079 0.80482 1.00208 1.86461 1.60797 1.12021 1.60558 1.18941 0.91339 0.83587 0.91469 1.20850 1.01186 0.96141 1.00814 1.43899 1.00789 1.00046 1.00833 1.94511 1.63211 1.23685 1.60245 1.94669 1.61470 1.17567 1.64430 1.20819 0.93077 0.95047 0.93433 1.20361 0.98726 0.97703 0.98205 1.25519 0.96520 0.89920 1.07843 1.86631 1.49157 1.48185 1.52012 0.94174 0.79818 0.80697 0.76067 1.21714 0.95156 0.89985 0.95365 1.21823 0.97937 1.02610 0.98299 1.23505 1.04650 0.88846 0.96773 1.23590 0.90559 0.89728 0.95858 0.89330 1.87874 1.33721 1.46333 1.62083 1.22990 1.02793 0.90245 0.91387 1.23988 1.03373 0.96021 0.94656 0.87151 0.91469 0.92499 0.72732 0.83408 0.84104 0.83420 0.85591 0.76167 1.18622 1.23913 0.79513 0.77539 0.88850 0.83601 0.93337 0.87973 0.93764 0.85426 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.56 113.37 1.20 1.35 16 2 O -0.32 -3.06 6.31 -43.48 -0.27 -3.34 16 3 C 0.47 3.36 6.98 71.24 0.50 3.86 16 4 O -0.53 -5.91 14.98 21.98 0.33 -5.58 16 5 C 0.16 -0.17 1.22 3.38 0.00 -0.16 16 6 N -0.69 5.20 5.32 -423.93 -2.25 2.95 16 7 C 0.50 -0.70 7.26 87.65 0.64 -0.07 16 8 O -0.51 -5.61 13.03 27.21 0.35 -5.25 16 9 C 0.03 -0.28 5.22 71.23 0.37 0.09 16 10 O -0.29 -0.56 7.68 -63.37 -0.49 -1.05 16 11 C 0.20 -0.26 6.67 22.51 0.15 -0.11 16 12 C -0.10 -0.59 6.87 36.47 0.25 -0.34 16 13 N 0.03 0.53 4.45 -46.24 -0.21 0.33 16 14 O -0.21 -3.81 18.45 18.89 0.35 -3.46 16 15 O -0.17 -3.27 17.24 25.61 0.44 -2.83 16 16 C 0.00 0.00 9.11 22.25 0.20 0.20 16 17 C -0.15 0.99 5.39 -19.85 -0.11 0.88 16 18 C -0.09 0.63 2.82 71.24 0.20 0.83 16 19 O -0.55 0.99 12.77 -148.98 -1.90 -0.92 16 20 Si 0.79 -8.38 29.78 68.60 2.04 -6.34 16 21 C 0.00 0.06 8.66 22.25 0.19 0.26 16 22 C -0.19 2.36 9.04 22.37 0.20 2.56 16 23 C -0.10 0.49 6.95 31.12 0.22 0.71 16 24 C 0.06 0.00 3.91 31.21 0.12 0.13 16 25 H 0.09 0.28 7.05 -2.39 -0.02 0.26 16 26 O -0.38 -0.36 10.71 -148.98 -1.60 -1.95 16 27 C 0.02 -0.04 10.85 113.37 1.23 1.19 16 28 C -0.14 -0.01 7.30 31.21 0.23 0.21 16 29 H 0.11 0.44 8.14 -2.38 -0.02 0.42 16 30 H 0.07 0.27 8.13 -2.39 -0.02 0.25 16 31 H 0.06 0.40 8.13 -2.39 -0.02 0.38 16 32 H 0.43 -7.45 8.64 -92.71 -0.80 -8.25 16 33 H 0.15 -2.81 7.65 -2.39 -0.02 -2.83 16 34 H 0.14 -2.53 7.67 -2.38 -0.02 -2.55 16 35 H 0.15 0.49 7.61 -2.91 -0.02 0.47 16 36 H 0.13 -0.92 7.96 -2.39 -0.02 -0.94 16 37 H 0.39 -3.16 8.70 -74.06 -0.64 -3.81 16 38 H -0.26 2.48 7.11 99.48 0.71 3.18 16 39 H -0.31 0.10 7.11 99.48 0.71 0.81 16 40 H 0.19 -3.81 4.87 -2.91 -0.01 -3.83 16 41 H 0.21 -4.72 6.30 -2.91 -0.02 -4.74 16 42 H 0.09 -0.35 7.85 -2.39 -0.02 -0.37 16 43 H 0.15 -1.64 8.13 -2.39 -0.02 -1.66 16 44 H 0.05 -0.12 8.14 -2.39 -0.02 -0.14 16 45 H 0.10 -0.48 8.14 -2.39 -0.02 -0.50 16 46 H 0.04 -0.08 8.14 -2.39 -0.02 -0.10 16 47 H 0.13 -0.38 8.14 -2.39 -0.02 -0.40 16 48 H 0.06 0.29 8.09 -2.39 -0.02 0.27 16 Total: 0.00 -41.96 411.24 2.04 -39.92 By element: Atomic # 1 Polarization: -23.71 SS G_CDS: -0.35 Total: -24.06 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: 5.59 Total: 11.58 kcal Atomic # 7 Polarization: 5.74 SS G_CDS: -2.46 Total: 3.28 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -2.79 Total: -24.38 kcal Atomic # 14 Polarization: -8.38 SS G_CDS: 2.04 Total: -6.34 kcal Total: -41.96 2.04 -39.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14247462_4549638.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.505 kcal (2) G-P(sol) polarization free energy of solvation -41.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds