Wall clock time and date at job start Sun Mar 7 2021 00:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34228 * 116.99867 * 2 1 4 4 O 1.20826 * 120.00196 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99726 * 179.97438 * 3 2 1 6 6 N 1.46498 * 112.85214 * 324.06143 * 5 3 2 7 7 C 1.34773 * 119.99899 * 293.64237 * 6 5 3 8 8 O 1.21286 * 119.99920 * 354.98355 * 7 6 5 9 9 C 1.50701 * 120.00268 * 174.98757 * 7 6 5 10 10 O 1.42900 * 109.47408 * 179.97438 * 9 7 6 11 11 C 1.35894 * 116.99876 * 179.97438 * 10 9 7 12 12 C 1.38714 * 120.05725 * 180.25051 * 11 10 9 13 13 C 1.38160 * 119.94949 * 180.25719 * 12 11 10 14 14 C 1.50695 * 119.97703 * 179.74595 * 13 12 11 15 15 O 1.42904 * 109.47018 * 64.72385 * 14 13 12 16 16 Si 1.86295 * 109.47348 * 184.72092 * 14 13 12 17 17 C 1.38247 * 120.05240 * 359.47232 * 13 12 11 18 18 C 1.38293 * 120.11151 * 0.27294 * 17 13 12 19 19 C 1.38118 * 120.05489 * 0.02562 * 18 17 13 20 20 C 1.53777 * 113.61403 * 192.86246 * 5 3 2 21 21 C 1.53789 * 87.08162 * 270.80077 * 20 5 3 22 22 H 1.08997 * 113.61009 * 89.11435 * 21 20 5 23 23 O 1.42898 * 113.61613 * 220.02050 * 21 20 5 24 24 C 1.42899 * 114.00048 * 210.00379 * 23 21 20 25 25 C 1.53782 * 87.08097 * 334.56799 * 21 20 5 26 26 H 1.09000 * 109.47088 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46894 * 300.00259 * 1 2 3 28 28 H 1.08997 * 109.46827 * 59.99575 * 1 2 3 29 29 H 0.97004 * 120.00154 * 113.63860 * 6 5 3 30 30 H 1.08997 * 109.47184 * 59.99214 * 9 7 6 31 31 H 1.09008 * 109.46724 * 299.99623 * 9 7 6 32 32 H 1.08003 * 120.02457 * 359.97438 * 12 11 10 33 33 H 1.08999 * 109.47157 * 304.73061 * 14 13 12 34 34 H 0.96698 * 114.00341 * 179.97438 * 15 14 13 35 35 H 1.48505 * 110.00113 * 178.68207 * 16 14 13 36 36 H 1.48492 * 110.00641 * 300.00486 * 16 14 13 37 37 H 1.08004 * 119.94633 * 180.25639 * 17 13 12 38 38 H 1.07994 * 119.97022 * 179.97438 * 18 17 13 39 39 H 1.08003 * 120.02892 * 180.02562 * 19 18 17 40 40 H 1.08998 * 113.61817 * 25.35164 * 20 5 3 41 41 H 1.09001 * 113.61272 * 156.25426 * 20 5 3 42 42 H 1.09000 * 109.46457 * 299.99589 * 24 23 21 43 43 H 1.08995 * 109.47022 * 59.99674 * 24 23 21 44 44 H 1.09002 * 109.46944 * 179.97438 * 24 23 21 45 45 H 1.09002 * 113.61490 * 270.88374 * 25 21 20 46 46 H 1.08999 * 113.61349 * 139.97597 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 7 4.1914 0.2132 0.7934 7 6 4.0226 0.1823 2.1301 8 8 3.4305 1.0821 2.6876 9 6 4.5697 -0.9703 2.9323 10 8 4.2659 -0.7751 4.3149 11 6 4.6916 -1.7318 5.1811 12 6 4.4267 -1.6089 6.5371 13 6 4.8651 -2.5802 7.4164 14 6 4.5826 -2.4444 8.8904 15 8 3.1725 -2.5090 9.1131 16 14 5.4210 -3.8284 9.8135 17 6 5.5578 -3.6796 6.9444 18 6 5.8187 -3.8072 5.5923 19 6 5.3879 -2.8358 4.7100 20 6 4.1095 2.6789 0.3142 21 6 4.0445 2.9558 -1.1972 22 1 3.0867 3.3587 -1.5264 23 8 5.1602 3.6994 -1.6914 24 6 4.8559 4.5240 -2.8182 25 6 4.1771 1.4374 -1.4014 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 4.7267 -0.4675 0.3562 30 1 5.6506 -1.0230 2.8020 31 1 4.1165 -1.9000 2.5880 32 1 3.8821 -0.7522 6.9059 33 1 4.9631 -1.4871 9.2466 34 1 2.9169 -2.4286 10.0422 35 1 5.1764 -3.6877 11.2715 36 1 4.9109 -5.1390 9.3371 37 1 5.8962 -4.4399 7.6328 38 1 6.3604 -4.6667 5.2262 39 1 5.5914 -2.9361 3.6541 40 1 3.4243 3.2914 0.9002 41 1 5.1235 2.6755 0.7142 42 1 4.4961 3.9013 -3.6373 43 1 4.0854 5.2443 -2.5437 44 1 5.7542 5.0553 -3.1327 45 1 5.2095 1.0946 -1.4704 46 1 3.5463 1.0476 -2.2003 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14247462_4860298.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:17:09 Heat of formation + Delta-G solvation = -157.046618 kcal Electronic energy + Delta-G solvation = -31279.049891 eV Core-core repulsion = 26717.092499 eV Total energy + Delta-G solvation = -4561.957392 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 352.149 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.68250 -41.46287 -40.62174 -39.93514 -38.89288 -37.87106 -37.45393 -37.18831 -34.55023 -32.59993 -31.69298 -29.84391 -29.01164 -27.81766 -27.15241 -26.83323 -25.88498 -23.66369 -23.52686 -22.48013 -21.52913 -20.87006 -19.43898 -19.15807 -18.60102 -18.42623 -18.09684 -17.73473 -17.40762 -17.37444 -17.33020 -17.00317 -16.86838 -16.08675 -15.86637 -15.75137 -15.63435 -15.28928 -15.09044 -14.75595 -14.53341 -14.51630 -14.14822 -13.78656 -13.76929 -13.66931 -13.61710 -13.38604 -13.29530 -13.10585 -12.62572 -12.51409 -12.39903 -12.14568 -12.07415 -12.01177 -11.98289 -11.85568 -11.69894 -11.09729 -10.62981 -10.55855 -10.52663 -9.91340 -9.28448 -4.92013 0.20769 0.39569 0.72544 1.18893 1.23743 1.34033 1.53004 1.61663 1.94109 2.41227 2.63358 2.76652 3.00168 3.11597 3.34398 3.38690 3.43437 3.57766 3.79377 3.83185 3.93686 4.00762 4.07530 4.12966 4.14102 4.16489 4.25360 4.27793 4.38643 4.45613 4.48555 4.52140 4.52841 4.56074 4.64428 4.65736 4.72057 4.76238 4.86229 4.98032 5.03604 5.14128 5.23785 5.36996 5.47133 5.68226 6.11745 6.18217 6.36970 6.41888 6.54635 6.96254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.351 6.351 3 C 0.473 3.527 4 O -0.523 6.523 5 C 0.156 3.844 6 N -0.685 5.685 7 C 0.515 3.485 8 O -0.561 6.561 9 C 0.041 3.959 10 O -0.324 6.324 11 C 0.115 3.885 12 C -0.152 4.152 13 C -0.048 4.048 14 C -0.099 4.099 15 O -0.561 6.561 16 Si 0.784 3.216 17 C -0.161 4.161 18 C -0.069 4.069 19 C -0.200 4.200 20 C -0.118 4.118 21 C 0.063 3.937 22 H 0.092 0.908 23 O -0.385 6.385 24 C 0.021 3.979 25 C -0.117 4.117 26 H 0.135 0.865 27 H 0.049 0.951 28 H 0.071 0.929 29 H 0.434 0.566 30 H 0.136 0.864 31 H 0.128 0.872 32 H 0.111 0.889 33 H 0.088 0.912 34 H 0.394 0.606 35 H -0.288 1.288 36 H -0.292 1.292 37 H 0.145 0.855 38 H 0.166 0.834 39 H 0.166 0.834 40 H 0.062 0.938 41 H 0.114 0.886 42 H 0.057 0.943 43 H 0.042 0.958 44 H 0.100 0.900 45 H 0.146 0.854 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.901 -6.578 -5.560 11.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.267 6.267 3 C 0.314 3.686 4 O -0.411 6.411 5 C 0.067 3.933 6 N -0.343 5.343 7 C 0.301 3.699 8 O -0.437 6.437 9 C -0.037 4.037 10 O -0.237 6.237 11 C 0.070 3.930 12 C -0.170 4.170 13 C -0.048 4.048 14 C -0.207 4.207 15 O -0.371 6.371 16 Si 0.688 3.312 17 C -0.178 4.178 18 C -0.087 4.087 19 C -0.218 4.218 20 C -0.157 4.157 21 C 0.004 3.996 22 H 0.110 0.890 23 O -0.304 6.304 24 C -0.075 4.075 25 C -0.155 4.155 26 H 0.153 0.847 27 H 0.068 0.932 28 H 0.090 0.910 29 H 0.275 0.725 30 H 0.153 0.847 31 H 0.146 0.854 32 H 0.129 0.871 33 H 0.106 0.894 34 H 0.245 0.755 35 H -0.215 1.215 36 H -0.219 1.219 37 H 0.162 0.838 38 H 0.183 0.817 39 H 0.184 0.816 40 H 0.081 0.919 41 H 0.132 0.868 42 H 0.076 0.924 43 H 0.061 0.939 44 H 0.118 0.882 45 H 0.163 0.837 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 6.186 -6.227 -5.168 10.186 hybrid contribution -1.993 0.705 0.475 2.167 sum 4.192 -5.523 -4.694 8.373 Atomic orbital electron populations 1.23583 0.74683 1.05937 1.02386 1.86475 1.24895 1.32118 1.83203 1.23694 0.91681 0.81705 0.71496 1.90681 1.67037 1.37458 1.45916 1.20949 0.84552 0.90629 0.97185 1.45361 1.53149 1.30532 1.05259 1.20768 0.79086 0.87145 0.82857 1.90812 1.42457 1.39268 1.71189 1.22713 1.04225 0.97383 0.79361 1.86111 1.75282 1.45102 1.17211 1.19142 0.95421 0.89007 0.89446 1.20300 1.04384 1.01492 0.90873 1.19253 0.97399 0.94335 0.93810 1.25270 0.86343 1.11527 0.97511 1.86557 1.21662 1.96038 1.32830 0.93912 0.88785 0.73762 0.74774 1.21216 1.01782 0.97521 0.97289 1.21330 0.96793 0.98682 0.91905 1.21657 1.03017 0.94541 1.02633 1.23488 1.02699 0.92402 0.97089 1.23546 0.90612 0.91815 0.93633 0.89005 1.87908 1.33640 1.60145 1.48660 1.23025 1.02743 0.94008 0.87721 1.23836 1.04705 0.95778 0.91156 0.84731 0.93205 0.91050 0.72545 0.84661 0.85433 0.87076 0.89379 0.75517 1.21528 1.21898 0.83772 0.81690 0.81641 0.91897 0.86782 0.92424 0.93889 0.88174 0.83655 0.87710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.03 10.56 113.37 1.20 1.23 16 2 O -0.35 -1.67 10.42 -51.40 -0.54 -2.20 16 3 C 0.47 3.65 6.45 71.24 0.46 4.11 16 4 O -0.52 -7.38 15.12 21.96 0.33 -7.04 16 5 C 0.16 0.22 1.11 3.39 0.00 0.22 16 6 N -0.68 2.39 5.13 -423.92 -2.17 0.22 16 7 C 0.51 1.84 7.56 87.66 0.66 2.50 16 8 O -0.56 -8.88 15.54 15.99 0.25 -8.63 16 9 C 0.04 -0.11 5.22 71.24 0.37 0.26 16 10 O -0.32 -2.49 9.67 -73.32 -0.71 -3.20 16 11 C 0.11 0.63 6.69 22.51 0.15 0.78 16 12 C -0.15 -1.31 9.62 22.37 0.22 -1.09 16 13 C -0.05 -0.24 5.38 -19.88 -0.11 -0.35 16 14 C -0.10 -0.23 2.79 71.23 0.20 -0.04 16 15 O -0.56 -3.26 12.81 -148.98 -1.91 -5.17 16 16 Si 0.78 -1.18 29.85 68.60 2.05 0.87 16 17 C -0.16 -0.09 8.67 22.28 0.19 0.11 16 18 C -0.07 0.20 10.04 22.25 0.22 0.42 16 19 C -0.20 0.39 9.04 22.37 0.20 0.59 16 20 C -0.12 -0.60 6.15 31.12 0.19 -0.41 16 21 C 0.06 0.10 3.92 31.12 0.12 0.22 16 22 H 0.09 0.29 7.36 -2.39 -0.02 0.27 16 23 O -0.39 -1.00 10.71 -148.98 -1.60 -2.59 16 24 C 0.02 -0.04 10.85 113.37 1.23 1.19 16 25 C -0.12 0.58 7.21 31.12 0.22 0.80 16 26 H 0.13 -0.70 8.14 -2.39 -0.02 -0.72 16 27 H 0.05 0.23 8.13 -2.39 -0.02 0.21 16 28 H 0.07 0.01 8.13 -2.39 -0.02 -0.01 16 29 H 0.43 -5.64 8.71 -92.71 -0.81 -6.45 16 30 H 0.14 -1.45 7.66 -2.39 -0.02 -1.47 16 31 H 0.13 -1.15 7.66 -2.38 -0.02 -1.16 16 32 H 0.11 1.29 8.06 -2.91 -0.02 1.26 16 33 H 0.09 -0.04 7.96 -2.39 -0.02 -0.06 16 34 H 0.39 -1.05 8.74 -74.06 -0.65 -1.69 16 35 H -0.29 -0.78 7.11 99.48 0.71 -0.07 16 36 H -0.29 -1.33 7.05 99.48 0.70 -0.63 16 37 H 0.15 -0.49 4.86 -2.91 -0.01 -0.50 16 38 H 0.17 -1.59 8.06 -2.91 -0.02 -1.62 16 39 H 0.17 -1.64 6.30 -2.91 -0.02 -1.66 16 40 H 0.06 0.75 7.64 -2.39 -0.02 0.73 16 41 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 42 H 0.06 -0.27 8.14 -2.39 -0.02 -0.29 16 43 H 0.04 -0.06 8.14 -2.39 -0.02 -0.08 16 44 H 0.10 -0.42 8.14 -2.39 -0.02 -0.44 16 45 H 0.15 -1.44 8.14 -2.39 -0.02 -1.46 16 46 H 0.10 -0.78 8.10 -2.39 -0.02 -0.80 16 Total: 0.00 -34.28 390.87 0.85 -33.43 By element: Atomic # 1 Polarization: -15.83 SS G_CDS: -0.39 Total: -16.22 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: 5.54 Total: 10.55 kcal Atomic # 7 Polarization: 2.39 SS G_CDS: -2.17 Total: 0.22 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -4.17 Total: -28.84 kcal Atomic # 14 Polarization: -1.18 SS G_CDS: 2.05 Total: 0.87 kcal Total: -34.28 0.85 -33.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14247462_4860298.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.619 kcal (2) G-P(sol) polarization free energy of solvation -34.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds