Wall clock time and date at job start Sun Mar 7 2021 00:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34229 * 117.00008 * 2 1 4 4 O 1.20824 * 119.99810 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00416 * 179.97438 * 3 2 1 6 6 N 1.46504 * 112.84703 * 35.51157 * 5 3 2 7 7 C 1.34781 * 119.99929 * 66.98992 * 6 5 3 8 8 O 1.21284 * 120.00033 * 354.95616 * 7 6 5 9 9 C 1.50701 * 120.00027 * 174.95019 * 7 6 5 10 10 O 1.42896 * 109.47236 * 180.02562 * 9 7 6 11 11 C 1.35979 * 116.99972 * 180.02562 * 10 9 7 12 12 C 1.38677 * 119.99930 * 179.97438 * 11 10 9 13 13 C 1.50700 * 120.00135 * 359.97438 * 12 11 10 14 14 O 1.42907 * 109.46713 * 284.99746 * 13 12 11 15 15 Si 1.86301 * 109.47418 * 165.00129 * 13 12 11 16 16 C 1.38161 * 119.99884 * 180.24589 * 12 11 10 17 17 C 1.38674 * 119.99862 * 359.49957 * 16 12 11 18 18 O 1.35983 * 120.00083 * 180.25018 * 17 16 12 19 19 C 1.42896 * 117.00200 * 180.26677 * 18 17 16 20 20 C 1.38724 * 119.99909 * 0.51761 * 17 16 12 21 21 C 1.38109 * 119.99839 * 359.73547 * 20 17 16 22 22 C 1.53774 * 113.69105 * 264.24805 * 5 3 2 23 23 C 1.53786 * 87.08027 * 220.00375 * 22 5 3 24 24 H 1.09004 * 113.61437 * 139.97927 * 23 22 5 25 25 O 1.42901 * 113.69192 * 270.87031 * 23 22 5 26 26 C 1.42896 * 114.00020 * 247.53381 * 25 23 22 27 27 C 1.53782 * 113.61569 * 166.70508 * 5 3 2 28 28 H 1.09002 * 109.47472 * 300.00206 * 1 2 3 29 29 H 1.09005 * 109.46985 * 60.00303 * 1 2 3 30 30 H 1.09001 * 109.47191 * 180.02562 * 1 2 3 31 31 H 0.96998 * 120.00125 * 246.99368 * 6 5 3 32 32 H 1.09004 * 109.46898 * 60.00499 * 9 7 6 33 33 H 1.08996 * 109.46959 * 300.00438 * 9 7 6 34 34 H 1.08998 * 109.47172 * 44.99727 * 13 12 11 35 35 H 0.96701 * 113.99822 * 60.00199 * 14 13 12 36 36 H 1.48501 * 109.99867 * 299.99858 * 15 13 12 37 37 H 1.48503 * 109.99899 * 61.31203 * 15 13 12 38 38 H 1.07998 * 119.99630 * 179.72237 * 16 12 11 39 39 H 1.08998 * 109.47797 * 300.00506 * 19 18 17 40 40 H 1.09002 * 109.46726 * 60.00438 * 19 18 17 41 41 H 1.08999 * 109.47351 * 179.97438 * 19 18 17 42 42 H 1.07996 * 119.99699 * 179.74804 * 20 17 16 43 43 H 1.07998 * 119.99376 * 179.97438 * 21 20 17 44 44 H 1.08999 * 113.61711 * 334.54995 * 22 5 3 45 45 H 1.09001 * 113.61728 * 105.45645 * 22 5 3 46 46 H 1.08999 * 109.47356 * 299.99787 * 26 25 23 47 47 H 1.08997 * 109.47161 * 60.00091 * 26 25 23 48 48 H 1.09005 * 109.46916 * 179.97438 * 26 25 23 49 49 H 1.08998 * 113.61831 * 254.61281 * 27 5 3 50 50 H 1.08994 * 113.61312 * 25.43909 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2750 0.0006 6 7 4.1922 0.2072 -0.7832 7 6 4.0355 0.1729 -2.1214 8 8 3.3028 0.9709 -2.6668 9 6 4.7707 -0.8567 -2.9401 10 8 4.4432 -0.6898 -4.3210 11 6 5.0265 -1.5462 -5.2016 12 6 4.7521 -1.4404 -6.5568 13 6 3.8070 -0.3768 -7.0535 14 8 2.4630 -0.7522 -6.7454 15 14 3.9930 -0.1929 -8.8981 16 6 5.3407 -2.3137 -7.4511 17 6 6.2140 -3.2894 -6.9946 18 8 6.7974 -4.1457 -7.8752 19 6 7.6816 -5.1295 -7.3347 20 6 6.4882 -3.3954 -5.6388 21 6 5.8957 -2.5257 -4.7444 22 6 4.1753 1.4486 1.4019 23 6 5.1714 2.4297 0.7614 24 1 5.3787 3.3053 1.3767 25 8 6.3580 1.8039 0.2693 26 6 7.5415 2.1545 0.9893 27 6 4.1097 2.6766 -0.3235 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 4.7194 -0.4752 -0.3390 32 1 4.4786 -1.8554 -2.6152 33 1 5.8447 -0.7299 -2.8038 34 1 4.0397 0.5713 -6.5686 35 1 2.2933 -0.8660 -5.8002 36 1 5.3865 0.1974 -9.2316 37 1 3.6478 -1.4698 -9.5731 38 1 5.1235 -2.2341 -8.5060 39 1 8.5044 -4.6345 -6.8189 40 1 7.1377 -5.7591 -6.6306 41 1 8.0768 -5.7457 -8.1422 42 1 7.1652 -4.1579 -5.2829 43 1 6.1089 -2.6086 -3.6889 44 1 3.4992 1.9173 2.1169 45 1 4.6425 0.5435 1.7902 46 1 7.6975 3.2316 0.9294 47 1 7.4321 1.8606 2.0332 48 1 8.3975 1.6383 0.5546 49 1 4.5239 2.7628 -1.3280 50 1 3.4151 3.4809 -0.0815 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14247462_4974302.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:17:13 Heat of formation + Delta-G solvation = -191.645918 kcal Electronic energy + Delta-G solvation = -36869.154788 eV Core-core repulsion = 31831.477247 eV Total energy + Delta-G solvation = -5037.677541 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 382.164 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.56087 -41.86189 -40.83347 -40.27166 -39.59928 -38.17623 -37.75391 -37.08667 -36.93430 -34.36395 -32.92596 -31.18812 -29.90212 -29.04928 -28.08460 -27.69059 -27.11794 -26.65104 -26.28769 -24.00656 -22.80659 -22.50357 -21.92620 -20.58464 -19.65687 -19.25815 -18.87671 -18.64025 -18.26637 -18.14761 -17.62684 -17.46306 -17.33700 -17.25942 -16.90834 -16.73622 -16.11891 -16.04415 -15.93153 -15.73577 -15.57908 -15.37529 -15.27406 -14.77659 -14.71715 -14.39693 -14.19630 -13.98412 -13.73784 -13.65107 -13.53227 -13.46695 -13.39424 -13.11975 -13.03295 -12.60632 -12.55463 -12.36706 -12.23077 -12.16948 -12.07134 -11.92307 -11.65116 -11.54971 -11.30898 -11.14403 -11.04546 -10.63717 -10.34487 -10.24768 -8.94543 -4.88162 -0.07776 0.20521 0.86305 1.23257 1.30486 1.35097 1.57488 1.67977 1.87903 2.21343 2.39131 2.42306 2.59116 3.10811 3.20612 3.36206 3.44960 3.47706 3.57784 3.71807 3.81432 3.89715 3.97816 4.02928 4.05050 4.11527 4.16551 4.20464 4.20931 4.25938 4.33400 4.33802 4.42751 4.51192 4.55035 4.56348 4.60038 4.61194 4.67806 4.69419 4.75273 4.81691 4.86348 4.94864 5.00245 5.06910 5.16207 5.22262 5.28607 6.02885 6.20079 6.27554 6.34567 6.50490 6.53367 7.00559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.356 6.356 3 C 0.466 3.534 4 O -0.531 6.531 5 C 0.158 3.842 6 N -0.673 5.673 7 C 0.519 3.481 8 O -0.558 6.558 9 C 0.042 3.958 10 O -0.310 6.310 11 C 0.098 3.902 12 C -0.118 4.118 13 C -0.086 4.086 14 O -0.544 6.544 15 Si 0.811 3.189 16 C -0.142 4.142 17 C 0.089 3.911 18 O -0.341 6.341 19 C 0.017 3.983 20 C -0.158 4.158 21 C -0.154 4.154 22 C -0.127 4.127 23 C 0.077 3.923 24 H 0.109 0.891 25 O -0.377 6.377 26 C 0.024 3.976 27 C -0.132 4.132 28 H 0.068 0.932 29 H 0.049 0.951 30 H 0.131 0.869 31 H 0.429 0.571 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.076 0.924 35 H 0.371 0.629 36 H -0.266 1.266 37 H -0.285 1.285 38 H 0.124 0.876 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.114 0.886 42 H 0.167 0.833 43 H 0.175 0.825 44 H 0.122 0.878 45 H 0.122 0.878 46 H 0.045 0.955 47 H 0.059 0.941 48 H 0.096 0.904 49 H 0.070 0.930 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.220 -4.279 9.246 12.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.272 6.272 3 C 0.308 3.692 4 O -0.419 6.419 5 C 0.068 3.932 6 N -0.330 5.330 7 C 0.306 3.694 8 O -0.435 6.435 9 C -0.036 4.036 10 O -0.224 6.224 11 C 0.052 3.948 12 C -0.120 4.120 13 C -0.194 4.194 14 O -0.350 6.350 15 Si 0.712 3.288 16 C -0.160 4.160 17 C 0.044 3.956 18 O -0.256 6.256 19 C -0.077 4.077 20 C -0.176 4.176 21 C -0.172 4.172 22 C -0.164 4.164 23 C 0.019 3.981 24 H 0.127 0.873 25 O -0.296 6.296 26 C -0.072 4.072 27 C -0.170 4.170 28 H 0.087 0.913 29 H 0.068 0.932 30 H 0.149 0.851 31 H 0.269 0.731 32 H 0.146 0.854 33 H 0.144 0.856 34 H 0.094 0.906 35 H 0.219 0.781 36 H -0.191 1.191 37 H -0.212 1.212 38 H 0.142 0.858 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.132 0.868 42 H 0.184 0.816 43 H 0.192 0.808 44 H 0.141 0.859 45 H 0.140 0.860 46 H 0.064 0.936 47 H 0.077 0.923 48 H 0.114 0.886 49 H 0.089 0.911 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 6.679 -3.657 7.119 10.424 hybrid contribution 0.356 -0.830 1.754 1.972 sum 7.035 -4.486 8.873 12.180 Atomic orbital electron populations 1.23514 0.75201 1.05615 1.02215 1.86494 1.24595 1.32839 1.83268 1.24347 0.92428 0.81421 0.70983 1.90659 1.67217 1.37503 1.46495 1.21262 0.83102 0.91160 0.97654 1.45053 1.53429 1.29299 1.05204 1.20548 0.81225 0.84878 0.82745 1.90803 1.38599 1.42181 1.71940 1.22663 1.01915 0.99748 0.79267 1.86083 1.66264 1.53596 1.16410 1.18690 0.95666 0.91839 0.88566 1.19539 1.01667 0.99547 0.91205 1.25399 0.82388 0.95819 1.15757 1.86653 1.26156 1.91988 1.30251 0.92495 0.80959 0.83689 0.71669 1.20150 0.99968 0.96522 0.99399 1.18982 0.95059 0.91811 0.89793 1.86079 1.59795 1.44142 1.35558 1.23389 0.92317 0.89903 1.02114 1.21436 1.03136 1.02285 0.90757 1.21467 0.98084 0.95325 1.02302 1.23828 0.97913 1.03197 0.91485 1.22934 0.84955 0.95945 0.94302 0.87336 1.87868 1.15325 1.69197 1.57204 1.23017 0.86555 1.00539 0.97072 1.23592 0.97761 0.94413 1.01278 0.91315 0.93247 0.85122 0.73127 0.85431 0.85559 0.90561 0.78075 1.19144 1.21200 0.85846 0.91101 0.91192 0.86773 0.81593 0.80773 0.85942 0.85994 0.93645 0.92258 0.88592 0.91133 0.87125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.06 10.56 113.37 1.20 1.25 16 2 O -0.36 -1.98 10.41 -51.41 -0.54 -2.52 16 3 C 0.47 3.62 6.42 71.24 0.46 4.08 16 4 O -0.53 -7.48 15.66 21.97 0.34 -7.14 16 5 C 0.16 0.14 1.00 3.38 0.00 0.14 16 6 N -0.67 1.74 4.53 -423.91 -1.92 -0.18 16 7 C 0.52 1.65 7.39 87.66 0.65 2.30 16 8 O -0.56 -7.93 15.22 16.00 0.24 -7.69 16 9 C 0.04 -0.14 5.22 71.24 0.37 0.24 16 10 O -0.31 -1.61 8.56 -74.28 -0.64 -2.24 16 11 C 0.10 0.49 6.62 22.49 0.15 0.64 16 12 C -0.12 -1.10 5.27 -19.78 -0.10 -1.20 16 13 C -0.09 -0.79 2.33 71.24 0.17 -0.63 16 14 O -0.54 -5.99 12.65 -148.98 -1.89 -7.88 16 15 Si 0.81 5.23 30.41 68.60 2.09 7.32 16 16 C -0.14 -1.46 8.59 22.36 0.19 -1.27 16 17 C 0.09 0.61 6.69 22.49 0.15 0.76 16 18 O -0.34 -2.20 10.50 -93.36 -0.98 -3.19 16 19 C 0.02 -0.06 9.81 113.37 1.11 1.06 16 20 C -0.16 -0.04 9.03 22.36 0.20 0.16 16 21 C -0.15 0.16 9.03 22.35 0.20 0.36 16 22 C -0.13 0.85 7.20 31.12 0.22 1.08 16 23 C 0.08 -0.37 4.37 31.12 0.14 -0.23 16 24 H 0.11 -0.88 7.87 -2.38 -0.02 -0.90 16 25 O -0.38 1.60 10.14 -148.98 -1.51 0.09 16 26 C 0.02 -0.20 10.85 113.37 1.23 1.03 16 27 C -0.13 -0.33 6.67 31.12 0.21 -0.13 16 28 H 0.07 0.07 8.13 -2.39 -0.02 0.05 16 29 H 0.05 0.26 8.13 -2.38 -0.02 0.24 16 30 H 0.13 -0.55 8.14 -2.39 -0.02 -0.57 16 31 H 0.43 -4.39 8.67 -92.71 -0.80 -5.19 16 32 H 0.13 -1.26 7.66 -2.38 -0.02 -1.28 16 33 H 0.13 -1.15 7.66 -2.39 -0.02 -1.17 16 34 H 0.08 0.70 7.82 -2.39 -0.02 0.68 16 35 H 0.37 3.19 8.60 -74.06 -0.64 2.55 16 36 H -0.27 -2.34 7.11 99.48 0.71 -1.63 16 37 H -0.28 -3.34 6.80 99.48 0.68 -2.66 16 38 H 0.12 1.46 4.94 -2.91 -0.01 1.44 16 39 H 0.07 -0.45 7.66 -2.39 -0.02 -0.47 16 40 H 0.07 -0.43 7.66 -2.39 -0.02 -0.44 16 41 H 0.11 -0.69 8.14 -2.39 -0.02 -0.71 16 42 H 0.17 -1.06 6.29 -2.91 -0.02 -1.07 16 43 H 0.18 -1.68 6.29 -2.91 -0.02 -1.69 16 44 H 0.12 -0.96 8.10 -2.39 -0.02 -0.98 16 45 H 0.12 -1.39 8.09 -2.39 -0.02 -1.41 16 46 H 0.04 -0.36 8.14 -2.39 -0.02 -0.38 16 47 H 0.06 -0.65 8.14 -2.39 -0.02 -0.67 16 48 H 0.10 -0.93 8.14 -2.38 -0.02 -0.95 16 49 H 0.07 0.53 7.41 -2.39 -0.02 0.51 16 50 H 0.11 0.46 7.34 -2.39 -0.02 0.44 16 Total: 0.00 -31.35 418.10 1.32 -30.03 By element: Atomic # 1 Polarization: -15.82 SS G_CDS: -0.43 Total: -16.25 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: 6.54 Total: 9.63 kcal Atomic # 7 Polarization: 1.74 SS G_CDS: -1.92 Total: -0.18 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -4.96 Total: -30.56 kcal Atomic # 14 Polarization: 5.23 SS G_CDS: 2.09 Total: 7.32 kcal Total: -31.35 1.32 -30.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14247462_4974302.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.618 kcal (2) G-P(sol) polarization free energy of solvation -31.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds