Wall clock time and date at job start Sun Mar 7 2021 00:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34232 * 116.99954 * 2 1 4 4 O 1.20821 * 120.00003 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99669 * 179.97438 * 3 2 1 6 6 N 1.46501 * 112.85162 * 334.66117 * 5 3 2 7 7 C 1.34774 * 119.99540 * 50.33618 * 6 5 3 8 8 O 1.21277 * 120.00605 * 359.97438 * 7 6 5 9 9 C 1.50706 * 119.99821 * 180.02562 * 7 6 5 10 10 O 1.42891 * 109.47373 * 179.97438 * 9 7 6 11 11 C 1.35899 * 117.00352 * 179.97438 * 10 9 7 12 12 C 1.38748 * 120.02867 * 180.02562 * 11 10 9 13 13 C 1.50700 * 119.97479 * 359.97438 * 12 11 10 14 14 O 1.42898 * 109.47099 * 74.99703 * 13 12 11 15 15 Si 1.86301 * 109.47059 * 194.99973 * 13 12 11 16 16 C 1.38198 * 120.05244 * 179.97438 * 12 11 10 17 17 C 1.38150 * 120.11079 * 0.04429 * 16 12 11 18 18 C 1.38794 * 120.05479 * 359.95320 * 17 16 12 19 19 O 1.35899 * 120.02761 * 180.29443 * 18 17 16 20 20 C 1.42902 * 117.00042 * 359.73580 * 19 18 17 21 21 C 1.38615 * 119.94440 * 0.02746 * 18 17 16 22 22 C 1.53780 * 113.60889 * 203.46764 * 5 3 2 23 23 C 1.53780 * 87.08256 * 270.79615 * 22 5 3 24 24 H 1.09001 * 113.60929 * 89.11815 * 23 22 5 25 25 O 1.42893 * 113.61935 * 219.93572 * 23 22 5 26 26 C 1.42903 * 114.00504 * 210.00355 * 25 23 22 27 27 C 1.53785 * 113.61430 * 105.86358 * 5 3 2 28 28 H 1.08993 * 109.47244 * 300.00824 * 1 2 3 29 29 H 1.09001 * 109.46718 * 60.00620 * 1 2 3 30 30 H 1.09002 * 109.47076 * 180.02562 * 1 2 3 31 31 H 0.96997 * 119.99784 * 230.33692 * 6 5 3 32 32 H 1.09001 * 109.46876 * 59.99595 * 9 7 6 33 33 H 1.09009 * 109.46854 * 300.00273 * 9 7 6 34 34 H 1.08996 * 109.47043 * 314.99765 * 13 12 11 35 35 H 0.96702 * 113.99631 * 59.99933 * 14 13 12 36 36 H 1.48505 * 109.99627 * 180.02562 * 15 13 12 37 37 H 1.48501 * 109.99837 * 301.31501 * 15 13 12 38 38 H 1.08000 * 119.94719 * 180.02562 * 16 12 11 39 39 H 1.08001 * 119.97703 * 179.97438 * 17 16 12 40 40 H 1.09004 * 109.46420 * 299.99136 * 20 19 18 41 41 H 1.08993 * 109.47450 * 59.99009 * 20 19 18 42 42 H 1.08998 * 109.46791 * 179.97438 * 20 19 18 43 43 H 1.08003 * 120.04971 * 179.97438 * 21 18 17 44 44 H 1.08995 * 113.62090 * 25.35145 * 22 5 3 45 45 H 1.09006 * 113.61345 * 156.25328 * 22 5 3 46 46 H 1.09002 * 109.46390 * 300.00353 * 26 25 23 47 47 H 1.09005 * 109.47013 * 59.99581 * 26 25 23 48 48 H 1.08997 * 109.47311 * 180.02562 * 26 25 23 49 49 H 1.08998 * 113.61043 * 203.74564 * 27 5 3 50 50 H 1.08999 * 113.61197 * 334.64373 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 7 4.1981 0.0862 0.5788 7 6 3.8371 -1.1416 0.1564 8 8 2.9890 -1.2627 -0.7020 9 6 4.4865 -2.3644 0.7516 10 8 3.9395 -3.5371 0.1455 11 6 4.4210 -4.7341 0.5722 12 6 3.9344 -5.9130 0.0257 13 6 2.8711 -5.8656 -1.0412 14 8 3.4564 -5.4577 -2.2793 15 14 2.1143 -7.5565 -1.2392 16 6 4.4240 -7.1305 0.4589 17 6 5.3981 -7.1773 1.4374 18 6 5.8882 -6.0008 1.9872 19 8 6.8507 -6.0473 2.9454 20 6 7.3080 -7.3413 3.3434 21 6 5.3989 -4.7784 1.5541 22 6 4.1136 2.5979 0.5617 23 6 4.0344 3.1478 -0.8723 24 1 3.0738 3.6034 -1.1127 25 8 5.1449 3.9722 -1.2314 26 6 4.8297 4.9891 -2.1847 27 6 4.1619 1.6914 -1.3547 28 1 -0.3633 0.5139 0.8898 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 4.8761 0.1830 1.2657 32 1 4.2987 -2.3894 1.8251 33 1 5.5610 -2.3292 0.5715 34 1 2.0983 -5.1533 -0.7525 35 1 4.1539 -6.0470 -2.5976 36 1 1.0645 -7.5233 -2.2890 37 1 3.1633 -8.5431 -1.6017 38 1 4.0444 -8.0471 0.0320 39 1 5.7790 -8.1300 1.7746 40 1 6.4713 -7.9159 3.7407 41 1 7.7278 -7.8594 2.4813 42 1 8.0739 -7.2355 4.1117 43 1 5.7787 -3.8619 1.9810 44 1 3.4345 3.0916 1.2568 45 1 5.1314 2.5221 0.9446 46 1 4.4626 4.5268 -3.1010 47 1 4.0611 5.6450 -1.7755 48 1 5.7248 5.5708 -2.4049 49 1 5.1929 1.3672 -1.4966 50 1 3.5217 1.4542 -2.2043 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14247462_4974312.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:17:17 Heat of formation + Delta-G solvation = -183.259369 kcal Electronic energy + Delta-G solvation = -36696.397012 eV Core-core repulsion = 31659.083139 eV Total energy + Delta-G solvation = -5037.313873 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 382.164 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -42.62073 -41.74209 -40.62473 -40.12174 -39.61534 -38.34365 -37.81494 -37.10390 -36.91023 -34.39747 -32.28163 -31.42491 -29.89054 -28.91248 -28.33736 -27.81271 -27.18362 -26.11014 -25.88896 -23.91525 -23.14413 -22.46439 -21.55925 -20.81420 -19.95855 -19.35640 -18.53195 -18.25601 -17.96795 -17.76447 -17.64696 -17.37782 -17.23115 -17.16331 -16.88616 -16.62159 -16.46600 -16.14735 -15.97291 -15.76060 -15.27280 -15.19084 -15.14531 -14.98615 -14.54872 -14.52343 -14.44647 -13.77041 -13.74709 -13.62540 -13.47196 -13.33090 -13.27425 -13.12970 -13.05957 -12.56512 -12.46329 -12.30109 -12.27444 -12.17780 -12.00557 -11.85565 -11.68557 -11.61367 -11.61253 -10.84675 -10.64030 -10.49300 -10.35172 -9.67448 -9.07871 -4.91845 0.22388 0.33484 0.79365 1.33477 1.37559 1.47776 1.56837 1.59041 1.97333 2.24535 2.46919 2.59229 2.80830 2.94185 3.16618 3.43449 3.51880 3.53184 3.61526 3.74691 3.82869 3.95390 4.00154 4.08558 4.09983 4.15038 4.19857 4.21486 4.36898 4.39335 4.42380 4.43610 4.44499 4.49012 4.49593 4.52962 4.59310 4.64705 4.68728 4.70646 4.76515 4.80299 4.84271 5.04527 5.13322 5.25937 5.26199 5.30172 5.49407 6.10561 6.14840 6.35519 6.42563 6.51910 6.59095 7.13497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.323 6.323 3 C 0.469 3.531 4 O -0.526 6.526 5 C 0.157 3.843 6 N -0.696 5.696 7 C 0.508 3.492 8 O -0.514 6.514 9 C 0.039 3.961 10 O -0.299 6.299 11 C 0.180 3.820 12 C -0.195 4.195 13 C -0.074 4.074 14 O -0.548 6.548 15 Si 0.777 3.223 16 C -0.042 4.042 17 C -0.239 4.239 18 C 0.164 3.836 19 O -0.330 6.330 20 C 0.016 3.984 21 C -0.252 4.252 22 C -0.102 4.102 23 C 0.065 3.935 24 H 0.092 0.908 25 O -0.383 6.383 26 C 0.022 3.978 27 C -0.142 4.142 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.115 0.885 31 H 0.429 0.571 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.100 0.900 35 H 0.381 0.619 36 H -0.309 1.309 37 H -0.265 1.265 38 H 0.154 0.846 39 H 0.156 0.844 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.116 0.884 43 H 0.154 0.846 44 H 0.095 0.905 45 H 0.142 0.858 46 H 0.044 0.956 47 H 0.050 0.950 48 H 0.102 0.898 49 H 0.123 0.877 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.138 -3.277 6.721 9.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.237 6.237 3 C 0.312 3.688 4 O -0.416 6.416 5 C 0.068 3.932 6 N -0.355 5.355 7 C 0.294 3.706 8 O -0.387 6.387 9 C -0.039 4.039 10 O -0.211 6.211 11 C 0.133 3.867 12 C -0.196 4.196 13 C -0.182 4.182 14 O -0.356 6.356 15 Si 0.681 3.319 16 C -0.060 4.060 17 C -0.257 4.257 18 C 0.118 3.882 19 O -0.243 6.243 20 C -0.078 4.078 21 C -0.271 4.271 22 C -0.140 4.140 23 C 0.006 3.994 24 H 0.110 0.890 25 O -0.301 6.301 26 C -0.074 4.074 27 C -0.181 4.181 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.133 0.867 31 H 0.269 0.731 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.118 0.882 35 H 0.229 0.771 36 H -0.237 1.237 37 H -0.191 1.191 38 H 0.171 0.829 39 H 0.173 0.827 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.134 0.866 43 H 0.172 0.828 44 H 0.114 0.886 45 H 0.160 0.840 46 H 0.063 0.937 47 H 0.068 0.932 48 H 0.120 0.880 49 H 0.141 0.859 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.850 -3.114 5.680 7.535 hybrid contribution 0.538 0.462 -0.772 1.048 sum 4.389 -2.653 4.908 7.098 Atomic orbital electron populations 1.23466 0.76454 1.04834 1.02206 1.87019 1.23511 1.31155 1.82042 1.23643 0.91524 0.81929 0.71715 1.90665 1.66916 1.37132 1.46879 1.20939 0.85082 0.87849 0.99309 1.45459 1.43621 1.02692 1.43741 1.20477 0.82488 0.84736 0.82941 1.90827 1.30874 1.86020 1.31010 1.22661 0.99857 0.81906 0.99462 1.86213 1.61566 1.11981 1.61359 1.18546 0.91493 0.84973 0.91647 1.19586 1.04699 0.91269 1.04069 1.25102 0.97055 1.13357 0.82680 1.86652 1.56456 1.54222 1.38275 0.94166 0.78202 0.72558 0.86928 1.20933 0.93976 0.96535 0.94516 1.21383 1.03265 0.98319 1.02770 1.18883 0.87801 0.93753 0.87789 1.86056 1.51854 1.33717 1.52678 1.23391 1.00797 0.82163 1.01414 1.20568 1.03865 0.98545 1.04110 1.23507 1.04534 0.88936 0.96977 1.23548 0.90656 0.89612 0.95615 0.88999 1.87880 1.33809 1.46370 1.62067 1.23003 1.02832 0.90240 0.91353 1.23965 1.03220 0.96222 0.94705 0.91485 0.92475 0.86695 0.73061 0.86004 0.86183 0.88227 0.77072 1.23725 1.19064 0.82873 0.82685 0.91150 0.91535 0.86594 0.82825 0.88621 0.84018 0.93707 0.93179 0.88003 0.85875 0.91718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 10.56 113.37 1.20 1.34 16 2 O -0.32 -3.38 6.31 -43.46 -0.27 -3.66 16 3 C 0.47 4.11 6.98 71.24 0.50 4.60 16 4 O -0.53 -6.38 14.99 21.98 0.33 -6.05 16 5 C 0.16 0.28 1.22 3.38 0.00 0.28 16 6 N -0.70 1.96 5.32 -423.92 -2.25 -0.30 16 7 C 0.51 1.68 7.26 87.66 0.64 2.32 16 8 O -0.51 -6.86 13.03 27.23 0.35 -6.50 16 9 C 0.04 -0.06 5.22 71.24 0.37 0.31 16 10 O -0.30 -2.00 8.99 -73.38 -0.66 -2.66 16 11 C 0.18 0.78 6.66 22.49 0.15 0.93 16 12 C -0.19 -0.67 5.27 -19.75 -0.10 -0.77 16 13 C -0.07 -0.38 2.37 71.24 0.17 -0.21 16 14 O -0.55 -4.96 12.88 -148.98 -1.92 -6.88 16 15 Si 0.78 0.19 30.24 68.60 2.07 2.26 16 16 C -0.04 0.03 8.65 22.24 0.19 0.22 16 17 C -0.24 0.35 9.04 22.38 0.20 0.55 16 18 C 0.16 0.17 6.68 22.49 0.15 0.32 16 19 O -0.33 -0.07 10.49 -92.42 -0.97 -1.04 16 20 C 0.02 -0.11 9.81 113.37 1.11 1.00 16 21 C -0.25 -0.30 8.97 22.46 0.20 -0.10 16 22 C -0.10 0.23 6.96 31.12 0.22 0.44 16 23 C 0.06 0.13 3.90 31.18 0.12 0.25 16 24 H 0.09 0.40 7.05 -2.39 -0.02 0.38 16 25 O -0.38 -1.09 10.72 -148.98 -1.60 -2.68 16 26 C 0.02 -0.01 10.85 113.37 1.23 1.22 16 27 C -0.14 -0.36 7.30 31.18 0.23 -0.14 16 28 H 0.07 0.27 8.13 -2.39 -0.02 0.25 16 29 H 0.06 0.37 8.13 -2.39 -0.02 0.35 16 30 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.43 -4.80 8.64 -92.71 -0.80 -5.60 16 32 H 0.12 -0.90 7.66 -2.39 -0.02 -0.92 16 33 H 0.12 -0.84 7.66 -2.38 -0.02 -0.86 16 34 H 0.10 0.78 7.82 -2.39 -0.02 0.76 16 35 H 0.38 0.69 8.70 -74.06 -0.64 0.05 16 36 H -0.31 -2.69 7.11 99.48 0.71 -1.98 16 37 H -0.26 -0.21 6.68 99.48 0.66 0.46 16 38 H 0.15 -0.71 4.85 -2.91 -0.01 -0.72 16 39 H 0.16 -0.99 6.29 -2.91 -0.02 -1.01 16 40 H 0.07 -0.62 7.67 -2.38 -0.02 -0.64 16 41 H 0.07 -0.55 7.65 -2.39 -0.02 -0.57 16 42 H 0.12 -1.12 8.14 -2.39 -0.02 -1.14 16 43 H 0.15 -0.51 6.30 -2.91 -0.02 -0.53 16 44 H 0.10 -0.15 7.84 -2.39 -0.02 -0.17 16 45 H 0.14 -1.09 8.13 -2.38 -0.02 -1.11 16 46 H 0.04 -0.04 8.14 -2.39 -0.02 -0.06 16 47 H 0.05 -0.07 8.14 -2.38 -0.02 -0.09 16 48 H 0.10 -0.34 8.14 -2.39 -0.02 -0.36 16 49 H 0.12 0.04 8.14 -2.39 -0.02 0.02 16 50 H 0.06 0.41 8.09 -2.39 -0.02 0.39 16 Total: 0.00 -28.95 413.94 1.21 -27.74 By element: Atomic # 1 Polarization: -12.36 SS G_CDS: -0.45 Total: -12.80 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: 6.57 Total: 12.56 kcal Atomic # 7 Polarization: 1.96 SS G_CDS: -2.25 Total: -0.30 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -4.74 Total: -29.47 kcal Atomic # 14 Polarization: 0.19 SS G_CDS: 2.07 Total: 2.26 kcal Total: -28.95 1.21 -27.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14247462_4974312.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.519 kcal (2) G-P(sol) polarization free energy of solvation -28.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds