Wall clock time and date at job start Sun Mar 7 2021 00:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34228 * 116.99571 * 2 1 4 4 O 1.20834 * 120.00390 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00084 * 180.02562 * 3 2 1 6 6 N 1.46504 * 112.84516 * 324.05454 * 5 3 2 7 7 C 1.34769 * 120.00355 * 293.64171 * 6 5 3 8 8 O 1.21286 * 119.99630 * 354.98955 * 7 6 5 9 9 C 1.50697 * 120.00205 * 174.98746 * 7 6 5 10 10 O 1.42901 * 109.47204 * 179.97438 * 9 7 6 11 11 C 1.35991 * 117.00199 * 179.97438 * 10 9 7 12 12 C 1.39153 * 120.07620 * 179.72441 * 11 10 9 13 13 O 1.35995 * 120.07113 * 0.02562 * 12 11 10 14 14 C 1.42905 * 117.00155 * 179.97438 * 13 12 11 15 15 C 1.38569 * 119.85515 * 179.72015 * 12 11 10 16 16 C 1.38240 * 119.99781 * 0.55905 * 15 12 11 17 17 C 1.50695 * 119.92599 * 179.69571 * 16 15 12 18 18 O 1.42903 * 109.46902 * 65.02288 * 17 16 15 19 19 Si 1.86297 * 109.47344 * 185.01901 * 17 16 15 20 20 C 1.38249 * 120.14553 * 359.71918 * 16 15 12 21 21 C 1.38240 * 120.15017 * 0.02562 * 20 16 15 22 22 C 1.53777 * 113.61681 * 192.85984 * 5 3 2 23 23 C 1.53774 * 87.08194 * 270.79822 * 22 5 3 24 24 H 1.09001 * 113.61584 * 89.11466 * 23 22 5 25 25 O 1.42905 * 113.61652 * 220.01867 * 23 22 5 26 26 C 1.42900 * 114.00180 * 210.00139 * 25 23 22 27 27 C 1.53777 * 113.69331 * 95.32148 * 5 3 2 28 28 H 1.08998 * 109.47440 * 300.00148 * 1 2 3 29 29 H 1.08996 * 109.46915 * 60.00640 * 1 2 3 30 30 H 1.09007 * 109.46761 * 179.97438 * 1 2 3 31 31 H 0.97007 * 119.99586 * 113.64475 * 6 5 3 32 32 H 1.08998 * 109.47143 * 60.00193 * 9 7 6 33 33 H 1.09001 * 109.47213 * 300.00056 * 9 7 6 34 34 H 1.09000 * 109.46784 * 299.99971 * 14 13 12 35 35 H 1.08996 * 109.46923 * 59.99659 * 14 13 12 36 36 H 1.08996 * 109.46919 * 180.02562 * 14 13 12 37 37 H 1.08006 * 119.99675 * 180.27353 * 15 12 11 38 38 H 1.08999 * 109.47306 * 305.02374 * 17 16 15 39 39 H 0.96702 * 113.99688 * 180.02562 * 18 17 16 40 40 H 1.48499 * 110.00332 * 178.68100 * 19 17 16 41 41 H 1.48494 * 110.00184 * 300.00405 * 19 17 16 42 42 H 1.08008 * 119.92457 * 180.02562 * 20 16 15 43 43 H 1.08000 * 120.00066 * 179.97438 * 21 20 16 44 44 H 1.09007 * 113.61233 * 25.34657 * 22 5 3 45 45 H 1.08993 * 113.61527 * 156.24963 * 22 5 3 46 46 H 1.09000 * 109.47276 * 59.99481 * 26 25 23 47 47 H 1.08997 * 109.47081 * 180.02562 * 26 25 23 48 48 H 1.09006 * 109.46861 * 300.00060 * 26 25 23 49 49 H 1.08999 * 113.61666 * 203.67858 * 27 5 3 50 50 H 1.09009 * 113.61395 * 334.58487 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0006 6 7 4.1919 0.2132 0.7915 7 6 4.0242 0.1817 2.1283 8 8 3.4324 1.0813 2.6865 9 6 4.5719 -0.9711 2.9296 10 8 4.2692 -0.7764 4.3125 11 6 4.6958 -1.7340 5.1787 12 6 4.4408 -1.6060 6.5407 13 8 3.7639 -0.5231 7.0084 14 6 3.5378 -0.4585 8.4180 15 6 4.8725 -2.5874 7.4185 16 6 5.5650 -3.6849 6.9421 17 6 6.0397 -4.7478 7.8990 18 8 4.9110 -5.3948 8.4902 19 14 7.0619 -6.0025 6.9763 20 6 5.8234 -3.8092 5.5896 21 6 5.3909 -2.8363 4.7078 22 6 4.1096 2.6790 0.3131 23 6 4.0434 2.9565 -1.1980 24 1 3.0854 3.3594 -1.5264 25 8 5.1587 3.7004 -1.6928 26 6 4.8536 4.5252 -2.8191 27 6 4.1760 1.4381 -1.4029 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 4.7270 -0.4673 0.3536 32 1 5.6527 -1.0236 2.7986 33 1 4.1186 -1.9007 2.5854 34 1 2.9570 -1.3254 8.7329 35 1 4.4948 -0.4534 8.9396 36 1 2.9887 0.4524 8.6564 37 1 4.6719 -2.4925 8.4756 38 1 6.6458 -4.2889 8.6802 39 1 5.1422 -6.0922 9.1190 40 1 7.5625 -7.0389 7.9146 41 1 6.2468 -6.6353 5.9084 42 1 6.3644 -4.6683 5.2212 43 1 5.5945 -2.9357 3.6518 44 1 3.4247 3.2912 0.8999 45 1 5.1238 2.6756 0.7123 46 1 4.0831 5.2455 -2.5439 47 1 5.7517 5.0561 -3.1347 48 1 4.4931 3.9029 -3.6382 49 1 5.2083 1.0954 -1.4727 50 1 3.5446 1.0486 -2.2015 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14247462_60476.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:17:26 Heat of formation + Delta-G solvation = -183.536951 kcal Electronic energy + Delta-G solvation = -35997.548632 eV Core-core repulsion = 30960.222722 eV Total energy + Delta-G solvation = -5037.325910 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 382.164 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -42.52248 -41.68238 -40.59585 -39.95227 -39.09726 -38.75268 -37.69558 -37.15324 -36.96646 -34.41706 -32.11786 -31.42515 -29.95874 -29.03883 -28.40408 -27.84679 -27.11261 -26.25221 -25.76535 -23.71383 -23.10091 -22.37314 -21.61030 -20.72118 -19.71895 -19.24773 -18.62635 -18.34161 -18.12915 -17.94152 -17.66351 -17.45209 -17.34782 -17.16424 -16.92920 -16.50873 -16.12602 -16.05682 -15.89732 -15.74871 -15.52554 -15.39584 -14.98179 -14.88180 -14.39386 -14.31535 -14.05191 -13.99501 -13.75448 -13.58880 -13.52810 -13.45673 -13.27872 -13.03341 -12.78942 -12.61576 -12.54309 -12.27607 -12.18777 -12.12390 -12.01132 -11.89692 -11.80119 -11.68645 -11.65997 -10.89272 -10.60703 -10.53146 -10.39191 -9.73024 -8.80697 -4.99931 0.22448 0.34856 0.94288 1.24220 1.33808 1.36626 1.56093 1.65007 1.91649 2.35599 2.41580 2.57188 2.78681 3.02604 3.17824 3.30605 3.41165 3.49133 3.63768 3.70735 3.79158 3.85397 3.92210 3.98082 4.00109 4.15019 4.17593 4.25135 4.25188 4.31801 4.32931 4.33720 4.34545 4.42945 4.45435 4.50534 4.58377 4.61001 4.63738 4.67638 4.75632 4.77268 4.97469 5.03473 5.10665 5.14179 5.32329 5.44319 5.59001 5.97635 6.12761 6.21016 6.39868 6.58269 6.64674 7.01736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.351 6.351 3 C 0.478 3.522 4 O -0.488 6.488 5 C 0.159 3.841 6 N -0.707 5.707 7 C 0.518 3.482 8 O -0.496 6.496 9 C 0.041 3.959 10 O -0.277 6.277 11 C 0.105 3.895 12 C 0.107 3.893 13 O -0.301 6.301 14 C 0.025 3.975 15 C -0.145 4.145 16 C -0.068 4.068 17 C -0.074 4.074 18 O -0.536 6.536 19 Si 0.685 3.315 20 C -0.111 4.111 21 C -0.169 4.169 22 C -0.112 4.112 23 C 0.064 3.936 24 H 0.102 0.898 25 O -0.370 6.370 26 C 0.027 3.973 27 C -0.140 4.140 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.105 0.895 31 H 0.411 0.589 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.103 0.897 37 H 0.139 0.861 38 H 0.076 0.924 39 H 0.380 0.620 40 H -0.262 1.262 41 H -0.254 1.254 42 H 0.133 0.867 43 H 0.141 0.859 44 H 0.097 0.903 45 H 0.111 0.889 46 H 0.046 0.954 47 H 0.089 0.911 48 H 0.043 0.957 49 H 0.119 0.881 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.808 -4.064 -3.082 7.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.267 6.267 3 C 0.318 3.682 4 O -0.373 6.373 5 C 0.070 3.930 6 N -0.365 5.365 7 C 0.303 3.697 8 O -0.368 6.368 9 C -0.038 4.038 10 O -0.189 6.189 11 C 0.059 3.941 12 C 0.061 3.939 13 O -0.214 6.214 14 C -0.070 4.070 15 C -0.164 4.164 16 C -0.069 4.069 17 C -0.184 4.184 18 O -0.344 6.344 19 Si 0.587 3.413 20 C -0.129 4.129 21 C -0.187 4.187 22 C -0.150 4.150 23 C 0.006 3.994 24 H 0.119 0.881 25 O -0.288 6.288 26 C -0.069 4.069 27 C -0.178 4.178 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.123 0.877 31 H 0.247 0.753 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.121 0.879 37 H 0.157 0.843 38 H 0.094 0.906 39 H 0.227 0.773 40 H -0.187 1.187 41 H -0.179 1.179 42 H 0.150 0.850 43 H 0.158 0.842 44 H 0.115 0.885 45 H 0.129 0.871 46 H 0.064 0.936 47 H 0.108 0.892 48 H 0.062 0.938 49 H 0.137 0.863 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.855 -3.183 -3.233 5.953 hybrid contribution -0.835 -1.134 0.774 1.607 sum 3.020 -4.317 -2.459 5.814 Atomic orbital electron populations 1.23367 0.75564 1.04136 1.02900 1.86482 1.23925 1.32697 1.83600 1.23121 0.90594 0.81928 0.72540 1.90702 1.66040 1.36346 1.44242 1.20990 0.85825 0.90808 0.95368 1.45552 1.54037 1.30706 1.06172 1.20150 0.80186 0.87282 0.82076 1.90834 1.39398 1.36807 1.69779 1.22427 1.01881 0.97785 0.81677 1.86269 1.74459 1.43276 1.14904 1.18250 0.98573 0.89992 0.87308 1.18244 0.96753 0.88974 0.89931 1.86249 1.70711 1.39578 1.24895 1.23124 1.01315 1.03543 0.79025 1.20910 1.01606 0.94045 0.99809 1.18922 1.00036 0.94710 0.93183 1.24785 0.93629 0.99948 1.00022 1.86601 1.31487 1.54187 1.62077 0.95007 0.85013 0.79973 0.81348 1.20667 1.01042 0.99165 0.92035 1.20964 1.02594 0.94442 1.00726 1.23501 1.03435 0.91731 0.96336 1.23587 0.91050 0.90086 0.94721 0.88062 1.87945 1.33370 1.59652 1.47821 1.22876 1.02172 0.93916 0.87977 1.23862 1.03227 0.98081 0.92658 0.91534 0.91599 0.87710 0.75273 0.88437 0.88457 0.92561 0.92546 0.87905 0.84342 0.90599 0.77256 1.18701 1.17899 0.84977 0.84166 0.88474 0.87068 0.93562 0.89206 0.93783 0.86260 0.89389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.02 10.56 101.05 1.07 1.08 16 2 O -0.35 -0.85 10.42 -39.25 -0.41 -1.26 16 3 C 0.48 1.64 6.45 36.01 0.23 1.88 16 4 O -0.49 -2.89 15.11 -18.76 -0.28 -3.18 16 5 C 0.16 0.12 1.11 -132.16 -0.15 -0.03 16 6 N -0.71 0.77 5.13 -47.93 -0.25 0.52 16 7 C 0.52 1.03 7.56 -10.99 -0.08 0.95 16 8 O -0.50 -3.54 15.54 -14.36 -0.22 -3.77 16 9 C 0.04 -0.02 5.22 36.00 0.19 0.17 16 10 O -0.28 -1.15 9.45 -47.34 -0.45 -1.60 16 11 C 0.10 0.33 6.70 -39.12 -0.26 0.07 16 12 C 0.11 0.42 6.70 -39.12 -0.26 0.16 16 13 O -0.30 -1.45 10.28 -34.23 -0.35 -1.81 16 14 C 0.02 0.02 9.81 101.05 0.99 1.01 16 15 C -0.14 -0.33 8.67 -39.46 -0.34 -0.68 16 16 C -0.07 -0.10 5.38 -104.62 -0.56 -0.66 16 17 C -0.07 0.01 2.79 36.00 0.10 0.12 16 18 O -0.54 -0.58 12.81 -35.23 -0.45 -1.03 16 19 Si 0.69 -0.91 29.84 -169.99 -5.07 -5.98 16 20 C -0.11 -0.04 8.66 -39.58 -0.34 -0.38 16 21 C -0.17 -0.04 9.04 -39.46 -0.36 -0.40 16 22 C -0.11 -0.21 6.15 -25.92 -0.16 -0.37 16 23 C 0.06 0.04 3.92 -25.92 -0.10 -0.06 16 24 H 0.10 0.09 7.35 -51.93 -0.38 -0.29 16 25 O -0.37 -0.51 10.71 -35.23 -0.38 -0.89 16 26 C 0.03 -0.02 10.85 101.05 1.10 1.07 16 27 C -0.14 0.23 7.21 -25.92 -0.19 0.04 16 28 H 0.07 0.10 8.13 -51.93 -0.42 -0.32 16 29 H 0.07 -0.01 8.13 -51.93 -0.42 -0.43 16 30 H 0.10 -0.22 8.14 -51.93 -0.42 -0.64 16 31 H 0.41 -2.07 8.71 -40.82 -0.36 -2.42 16 32 H 0.10 -0.37 7.66 -51.93 -0.40 -0.77 16 33 H 0.10 -0.29 7.66 -51.93 -0.40 -0.69 16 34 H 0.06 0.00 7.65 -51.93 -0.40 -0.40 16 35 H 0.06 -0.04 7.67 -51.93 -0.40 -0.44 16 36 H 0.10 -0.06 8.14 -51.93 -0.42 -0.49 16 37 H 0.14 0.14 6.30 -52.48 -0.33 -0.19 16 38 H 0.08 -0.14 7.96 -51.93 -0.41 -0.56 16 39 H 0.38 -1.12 8.74 45.56 0.40 -0.72 16 40 H -0.26 -0.19 7.11 56.52 0.40 0.21 16 41 H -0.25 -0.40 7.04 56.52 0.40 0.00 16 42 H 0.13 -0.23 4.85 -52.48 -0.25 -0.49 16 43 H 0.14 -0.45 6.30 -52.49 -0.33 -0.78 16 44 H 0.10 0.40 7.64 -51.92 -0.40 0.01 16 45 H 0.11 0.16 8.14 -51.93 -0.42 -0.26 16 46 H 0.05 -0.05 8.14 -51.93 -0.42 -0.47 16 47 H 0.09 -0.17 8.14 -51.93 -0.42 -0.59 16 48 H 0.04 -0.08 8.14 -51.93 -0.42 -0.50 16 49 H 0.12 -0.40 8.14 -51.93 -0.42 -0.82 16 50 H 0.09 -0.22 8.10 -51.92 -0.42 -0.64 16 LS Contribution 420.10 15.07 6.33 6.33 Total: 0.00 -13.64 420.10 -7.75 -21.38 By element: Atomic # 1 Polarization: -5.62 SS G_CDS: -7.08 Total: -12.70 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 0.87 Total: 3.97 kcal Atomic # 7 Polarization: 0.77 SS G_CDS: -0.25 Total: 0.52 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: -2.54 Total: -13.53 kcal Atomic # 14 Polarization: -0.91 SS G_CDS: -5.07 Total: -5.98 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -13.64 -7.75 -21.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14247462_60476.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.152 kcal (2) G-P(sol) polarization free energy of solvation -13.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds