Wall clock time and date at job start Sun Mar 7 2021 00:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34228 * 116.99571 * 2 1 4 4 O 1.20834 * 120.00390 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00084 * 180.02562 * 3 2 1 6 6 N 1.46504 * 112.84516 * 324.05454 * 5 3 2 7 7 C 1.34769 * 120.00355 * 293.64171 * 6 5 3 8 8 O 1.21286 * 119.99630 * 354.98955 * 7 6 5 9 9 C 1.50697 * 120.00205 * 174.98746 * 7 6 5 10 10 O 1.42901 * 109.47204 * 179.97438 * 9 7 6 11 11 C 1.35991 * 117.00199 * 179.97438 * 10 9 7 12 12 C 1.39153 * 120.07620 * 179.72441 * 11 10 9 13 13 O 1.35995 * 120.07113 * 0.02562 * 12 11 10 14 14 C 1.42905 * 117.00155 * 179.97438 * 13 12 11 15 15 C 1.38569 * 119.85515 * 179.72015 * 12 11 10 16 16 C 1.38240 * 119.99781 * 0.55905 * 15 12 11 17 17 C 1.50695 * 119.92599 * 179.69571 * 16 15 12 18 18 O 1.42903 * 109.46902 * 65.02288 * 17 16 15 19 19 Si 1.86297 * 109.47344 * 185.01901 * 17 16 15 20 20 C 1.38249 * 120.14553 * 359.71918 * 16 15 12 21 21 C 1.38240 * 120.15017 * 0.02562 * 20 16 15 22 22 C 1.53777 * 113.61681 * 192.85984 * 5 3 2 23 23 C 1.53774 * 87.08194 * 270.79822 * 22 5 3 24 24 H 1.09001 * 113.61584 * 89.11466 * 23 22 5 25 25 O 1.42905 * 113.61652 * 220.01867 * 23 22 5 26 26 C 1.42900 * 114.00180 * 210.00139 * 25 23 22 27 27 C 1.53777 * 113.69331 * 95.32148 * 5 3 2 28 28 H 1.08998 * 109.47440 * 300.00148 * 1 2 3 29 29 H 1.08996 * 109.46915 * 60.00640 * 1 2 3 30 30 H 1.09007 * 109.46761 * 179.97438 * 1 2 3 31 31 H 0.97007 * 119.99586 * 113.64475 * 6 5 3 32 32 H 1.08998 * 109.47143 * 60.00193 * 9 7 6 33 33 H 1.09001 * 109.47213 * 300.00056 * 9 7 6 34 34 H 1.09000 * 109.46784 * 299.99971 * 14 13 12 35 35 H 1.08996 * 109.46923 * 59.99659 * 14 13 12 36 36 H 1.08996 * 109.46919 * 180.02562 * 14 13 12 37 37 H 1.08006 * 119.99675 * 180.27353 * 15 12 11 38 38 H 1.08999 * 109.47306 * 305.02374 * 17 16 15 39 39 H 0.96702 * 113.99688 * 180.02562 * 18 17 16 40 40 H 1.48499 * 110.00332 * 178.68100 * 19 17 16 41 41 H 1.48494 * 110.00184 * 300.00405 * 19 17 16 42 42 H 1.08008 * 119.92457 * 180.02562 * 20 16 15 43 43 H 1.08000 * 120.00066 * 179.97438 * 21 20 16 44 44 H 1.09007 * 113.61233 * 25.34657 * 22 5 3 45 45 H 1.08993 * 113.61527 * 156.24963 * 22 5 3 46 46 H 1.09000 * 109.47276 * 59.99481 * 26 25 23 47 47 H 1.08997 * 109.47081 * 180.02562 * 26 25 23 48 48 H 1.09006 * 109.46861 * 300.00060 * 26 25 23 49 49 H 1.08999 * 113.61666 * 203.67858 * 27 5 3 50 50 H 1.09009 * 113.61395 * 334.58487 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0006 6 7 4.1919 0.2132 0.7915 7 6 4.0242 0.1817 2.1283 8 8 3.4324 1.0813 2.6865 9 6 4.5719 -0.9711 2.9296 10 8 4.2692 -0.7764 4.3125 11 6 4.6958 -1.7340 5.1787 12 6 4.4408 -1.6060 6.5407 13 8 3.7639 -0.5231 7.0084 14 6 3.5378 -0.4585 8.4180 15 6 4.8725 -2.5874 7.4185 16 6 5.5650 -3.6849 6.9421 17 6 6.0397 -4.7478 7.8990 18 8 4.9110 -5.3948 8.4902 19 14 7.0619 -6.0025 6.9763 20 6 5.8234 -3.8092 5.5896 21 6 5.3909 -2.8363 4.7078 22 6 4.1096 2.6790 0.3131 23 6 4.0434 2.9565 -1.1980 24 1 3.0854 3.3594 -1.5264 25 8 5.1587 3.7004 -1.6928 26 6 4.8536 4.5252 -2.8191 27 6 4.1760 1.4381 -1.4029 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 4.7270 -0.4673 0.3536 32 1 5.6527 -1.0236 2.7986 33 1 4.1186 -1.9007 2.5854 34 1 2.9570 -1.3254 8.7329 35 1 4.4948 -0.4534 8.9396 36 1 2.9887 0.4524 8.6564 37 1 4.6719 -2.4925 8.4756 38 1 6.6458 -4.2889 8.6802 39 1 5.1422 -6.0922 9.1190 40 1 7.5625 -7.0389 7.9146 41 1 6.2468 -6.6353 5.9084 42 1 6.3644 -4.6683 5.2212 43 1 5.5945 -2.9357 3.6518 44 1 3.4247 3.2912 0.8999 45 1 5.1238 2.6756 0.7123 46 1 4.0831 5.2455 -2.5439 47 1 5.7517 5.0561 -3.1347 48 1 4.4931 3.9029 -3.6382 49 1 5.2083 1.0954 -1.4727 50 1 3.5446 1.0486 -2.2015 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14247462_60476.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:17:24 Heat of formation + Delta-G solvation = -189.824985 kcal Electronic energy + Delta-G solvation = -35997.821302 eV Core-core repulsion = 30960.222722 eV Total energy + Delta-G solvation = -5037.598579 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 382.164 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.65895 -41.75820 -40.76409 -40.04398 -39.23388 -38.79498 -37.85070 -37.25512 -37.06888 -34.51531 -32.14809 -31.46734 -30.00295 -29.10332 -28.46585 -27.80313 -27.13013 -26.26927 -25.81030 -23.79814 -23.18952 -22.42952 -21.66820 -20.85553 -19.78417 -19.34079 -18.64058 -18.44656 -18.23287 -18.05783 -17.75622 -17.50910 -17.41229 -17.30981 -16.97743 -16.62687 -16.14206 -16.06201 -15.95734 -15.74047 -15.57695 -15.50216 -15.08425 -14.91597 -14.52769 -14.40489 -14.07596 -14.00217 -13.74649 -13.63798 -13.57015 -13.49499 -13.35072 -13.09019 -12.80038 -12.62265 -12.54332 -12.37901 -12.21947 -12.17015 -12.05153 -11.99421 -11.92491 -11.83623 -11.67638 -11.05742 -10.61237 -10.49752 -10.48118 -9.77315 -8.91173 -4.88154 0.17484 0.28179 0.74852 1.22607 1.32467 1.33091 1.55897 1.65071 1.98518 2.30796 2.41224 2.53190 2.78184 3.02388 3.13805 3.36704 3.39885 3.45696 3.59544 3.71854 3.88854 3.90145 3.96535 4.05783 4.12118 4.14374 4.17093 4.17864 4.27537 4.29978 4.34230 4.40349 4.47175 4.48595 4.53383 4.54814 4.57341 4.63890 4.65092 4.66469 4.74234 4.78295 4.87339 5.00280 5.06444 5.11720 5.16207 5.39845 5.58725 5.95195 6.13234 6.28480 6.43649 6.52176 6.59787 7.00971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.351 6.351 3 C 0.473 3.527 4 O -0.524 6.524 5 C 0.156 3.844 6 N -0.685 5.685 7 C 0.515 3.485 8 O -0.560 6.560 9 C 0.037 3.963 10 O -0.314 6.314 11 C 0.086 3.914 12 C 0.076 3.924 13 O -0.334 6.334 14 C 0.020 3.980 15 C -0.152 4.152 16 C -0.081 4.081 17 C -0.089 4.089 18 O -0.560 6.560 19 Si 0.775 3.225 20 C -0.113 4.113 21 C -0.158 4.158 22 C -0.118 4.118 23 C 0.063 3.937 24 H 0.092 0.908 25 O -0.385 6.385 26 C 0.021 3.979 27 C -0.117 4.117 28 H 0.049 0.951 29 H 0.071 0.929 30 H 0.134 0.866 31 H 0.434 0.566 32 H 0.138 0.862 33 H 0.129 0.871 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.110 0.890 37 H 0.142 0.858 38 H 0.092 0.908 39 H 0.394 0.606 40 H -0.290 1.290 41 H -0.290 1.290 42 H 0.156 0.844 43 H 0.180 0.820 44 H 0.062 0.938 45 H 0.114 0.886 46 H 0.042 0.958 47 H 0.100 0.900 48 H 0.057 0.943 49 H 0.146 0.854 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.771 -6.450 -4.716 10.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.267 6.267 3 C 0.314 3.686 4 O -0.411 6.411 5 C 0.067 3.933 6 N -0.343 5.343 7 C 0.301 3.699 8 O -0.436 6.436 9 C -0.041 4.041 10 O -0.228 6.228 11 C 0.041 3.959 12 C 0.031 3.969 13 O -0.249 6.249 14 C -0.074 4.074 15 C -0.171 4.171 16 C -0.081 4.081 17 C -0.197 4.197 18 O -0.370 6.370 19 Si 0.679 3.321 20 C -0.130 4.130 21 C -0.176 4.176 22 C -0.157 4.157 23 C 0.004 3.996 24 H 0.110 0.890 25 O -0.303 6.303 26 C -0.075 4.075 27 C -0.154 4.154 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.153 0.847 31 H 0.275 0.725 32 H 0.155 0.845 33 H 0.147 0.853 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.128 0.872 37 H 0.160 0.840 38 H 0.110 0.890 39 H 0.245 0.755 40 H -0.217 1.217 41 H -0.218 1.218 42 H 0.173 0.827 43 H 0.197 0.803 44 H 0.080 0.920 45 H 0.132 0.868 46 H 0.061 0.939 47 H 0.118 0.882 48 H 0.076 0.924 49 H 0.164 0.836 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 5.851 -5.603 -4.886 9.461 hybrid contribution -1.495 -0.409 1.316 2.034 sum 4.356 -6.013 -3.569 8.238 Atomic orbital electron populations 1.23578 0.74721 1.05917 1.02368 1.86475 1.24867 1.32122 1.83204 1.23707 0.91703 0.81693 0.71463 1.90681 1.67052 1.37463 1.45950 1.20939 0.84521 0.90637 0.97187 1.45359 1.53213 1.30535 1.05240 1.20762 0.79109 0.87168 0.82825 1.90819 1.42379 1.39265 1.71137 1.22758 1.04359 0.97439 0.79504 1.86213 1.75270 1.44362 1.16906 1.18543 0.99502 0.90842 0.87050 1.18656 0.97897 0.89362 0.91025 1.86190 1.71387 1.40619 1.26669 1.23280 1.02195 1.04124 0.77802 1.21018 1.01963 0.94224 0.99921 1.19254 0.99869 0.94746 0.94277 1.25105 0.93548 1.00344 1.00707 1.86555 1.32632 1.55042 1.62811 0.94031 0.82575 0.77249 0.78222 1.21003 1.00648 0.99743 0.91629 1.21373 1.00753 0.92829 1.02642 1.23484 1.02695 0.92441 0.97065 1.23545 0.90599 0.91830 0.93628 0.89032 1.87909 1.33641 1.60117 1.48678 1.23024 1.02722 0.94007 0.87739 1.23832 1.04725 0.95739 0.91142 0.93220 0.91062 0.84750 0.72536 0.84453 0.85347 0.92155 0.91335 0.87155 0.84035 0.88990 0.75521 1.21742 1.21751 0.82712 0.80308 0.91959 0.86788 0.93904 0.88177 0.92436 0.83624 0.87723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.04 10.56 113.37 1.20 1.24 16 2 O -0.35 -1.80 10.42 -51.39 -0.54 -2.33 16 3 C 0.47 3.84 6.45 71.24 0.46 4.30 16 4 O -0.52 -7.59 15.11 21.94 0.33 -7.26 16 5 C 0.16 0.27 1.11 3.38 0.00 0.28 16 6 N -0.69 2.13 5.13 -423.93 -2.17 -0.04 16 7 C 0.51 2.17 7.56 87.66 0.66 2.84 16 8 O -0.56 -9.41 15.54 15.99 0.25 -9.16 16 9 C 0.04 -0.08 5.22 71.23 0.37 0.29 16 10 O -0.31 -2.86 9.45 -67.03 -0.63 -3.49 16 11 C 0.09 0.57 6.70 22.57 0.15 0.72 16 12 C 0.08 0.72 6.70 22.57 0.15 0.87 16 13 O -0.33 -4.11 10.28 -79.63 -0.82 -4.93 16 14 C 0.02 0.07 9.81 113.37 1.11 1.18 16 15 C -0.15 -0.84 8.67 22.35 0.19 -0.65 16 16 C -0.08 -0.20 5.38 -19.86 -0.11 -0.30 16 17 C -0.09 0.11 2.79 71.23 0.20 0.30 16 18 O -0.56 -1.09 12.81 -148.98 -1.91 -3.00 16 19 Si 0.77 -3.13 29.84 68.60 2.05 -1.09 16 20 C -0.11 0.11 8.66 22.27 0.19 0.30 16 21 C -0.16 0.21 9.04 22.35 0.20 0.41 16 22 C -0.12 -0.65 6.15 31.12 0.19 -0.46 16 23 C 0.06 0.11 3.92 31.12 0.12 0.24 16 24 H 0.09 0.32 7.35 -2.39 -0.02 0.30 16 25 O -0.38 -1.09 10.71 -148.98 -1.60 -2.68 16 26 C 0.02 -0.04 10.85 113.37 1.23 1.19 16 27 C -0.12 0.55 7.21 31.12 0.22 0.77 16 28 H 0.05 0.25 8.13 -2.39 -0.02 0.23 16 29 H 0.07 0.03 8.13 -2.39 -0.02 0.01 16 30 H 0.13 -0.66 8.14 -2.38 -0.02 -0.68 16 31 H 0.43 -5.55 8.71 -92.70 -0.81 -6.36 16 32 H 0.14 -1.47 7.66 -2.39 -0.02 -1.49 16 33 H 0.13 -1.13 7.66 -2.39 -0.02 -1.15 16 34 H 0.06 0.11 7.65 -2.39 -0.02 0.09 16 35 H 0.07 0.01 7.67 -2.39 -0.02 -0.01 16 36 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 37 H 0.14 0.48 6.30 -2.91 -0.02 0.46 16 38 H 0.09 -0.44 7.96 -2.39 -0.02 -0.46 16 39 H 0.39 -2.43 8.74 -74.06 -0.65 -3.08 16 40 H -0.29 -0.17 7.11 99.48 0.71 0.54 16 41 H -0.29 -0.58 7.04 99.48 0.70 0.12 16 42 H 0.16 -0.95 4.85 -2.91 -0.01 -0.96 16 43 H 0.18 -1.84 6.30 -2.91 -0.02 -1.86 16 44 H 0.06 0.77 7.64 -2.38 -0.02 0.75 16 45 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 46 H 0.04 -0.05 8.14 -2.39 -0.02 -0.07 16 47 H 0.10 -0.41 8.14 -2.39 -0.02 -0.43 16 48 H 0.06 -0.26 8.14 -2.38 -0.02 -0.28 16 49 H 0.15 -1.42 8.14 -2.39 -0.02 -1.44 16 50 H 0.10 -0.76 8.10 -2.38 -0.02 -0.78 16 Total: 0.00 -37.56 420.10 1.10 -36.46 By element: Atomic # 1 Polarization: -15.57 SS G_CDS: -0.42 Total: -15.99 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: 6.56 Total: 13.51 kcal Atomic # 7 Polarization: 2.13 SS G_CDS: -2.17 Total: -0.04 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: -4.91 Total: -32.86 kcal Atomic # 14 Polarization: -3.13 SS G_CDS: 2.05 Total: -1.09 kcal Total: -37.56 1.10 -36.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14247462_60476.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.361 kcal (2) G-P(sol) polarization free energy of solvation -37.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds