Wall clock time and date at job start Sun Mar 7 2021 00:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34233 * 116.99929 * 2 1 4 4 O 1.20830 * 119.99593 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00037 * 180.02562 * 3 2 1 6 6 N 1.46496 * 112.84885 * 334.67032 * 5 3 2 7 7 C 1.34774 * 120.00345 * 50.33296 * 6 5 3 8 8 O 1.21698 * 119.99664 * 0.02562 * 7 6 5 9 9 C 1.46676 * 120.00472 * 179.97438 * 7 6 5 10 10 C 1.37873 * 126.23694 * 180.02562 * 9 7 6 11 11 C 1.39835 * 107.08545 * 179.97438 * 10 9 7 12 12 C 1.35445 * 107.86575 * 0.02562 * 11 10 9 13 13 C 1.50703 * 125.56433 * 179.97438 * 12 11 10 14 14 O 1.42899 * 109.47139 * 120.02737 * 13 12 11 15 15 Si 1.86297 * 109.47153 * 0.02562 * 13 12 11 16 16 N 1.35539 * 108.87398 * 359.97438 * 12 11 10 17 17 C 1.53776 * 113.61219 * 203.47381 * 5 3 2 18 18 C 1.53779 * 87.08350 * 270.79883 * 17 5 3 19 19 H 1.09001 * 113.61459 * 89.19876 * 18 17 5 20 20 O 1.42894 * 113.61811 * 220.02158 * 18 17 5 21 21 C 1.42902 * 114.00274 * 209.99984 * 20 18 17 22 22 C 1.53780 * 113.61348 * 105.86624 * 5 3 2 23 23 H 1.09003 * 109.46878 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46892 * 299.99315 * 1 2 3 25 25 H 1.08997 * 109.47692 * 59.99885 * 1 2 3 26 26 H 0.96997 * 120.00158 * 230.33094 * 6 5 3 27 27 H 1.07996 * 126.45296 * 0.24618 * 10 9 7 28 28 H 1.08001 * 126.06221 * 180.02562 * 11 10 9 29 29 H 1.09006 * 109.46894 * 240.02634 * 13 12 11 30 30 H 0.96704 * 113.99441 * 180.02562 * 14 13 12 31 31 H 1.48504 * 110.00022 * 59.99718 * 15 13 12 32 32 H 1.48492 * 110.00214 * 181.31928 * 15 13 12 33 33 H 0.96995 * 125.67477 * 179.97438 * 16 12 11 34 34 H 1.08994 * 113.61719 * 25.34956 * 17 5 3 35 35 H 1.09004 * 113.61301 * 156.16615 * 17 5 3 36 36 H 1.09003 * 109.46947 * 59.99527 * 21 20 18 37 37 H 1.08992 * 109.47551 * 179.97438 * 21 20 18 38 38 H 1.09005 * 109.46972 * 299.99884 * 21 20 18 39 39 H 1.08995 * 113.61340 * 203.75031 * 22 5 3 40 40 H 1.09004 * 113.61450 * 334.65058 * 22 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 4.1985 0.0860 0.5765 7 6 3.8372 -1.1417 0.1538 8 8 2.9862 -1.2626 -0.7076 9 6 4.4706 -2.3320 0.7312 10 6 4.2014 -3.6420 0.3961 11 6 5.0284 -4.4464 1.1862 12 6 5.7714 -3.6320 1.9731 13 6 6.7969 -4.0835 2.9809 14 8 8.0739 -3.5427 2.6361 15 14 6.8901 -5.9442 2.9811 16 7 5.4422 -2.3446 1.7061 17 6 4.1140 2.5977 0.5607 18 6 4.0335 3.1484 -0.8728 19 1 3.0732 3.6053 -1.1118 20 8 5.1446 3.9714 -1.2332 21 6 4.8295 4.9892 -2.1855 22 6 4.1607 1.6921 -1.3561 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 4.8771 0.1824 1.2628 27 1 3.4894 -3.9825 -0.3411 28 1 5.0676 -5.5256 1.1716 29 1 6.5100 -3.7340 3.9727 30 1 8.7839 -3.7932 3.2430 31 1 7.2802 -6.4334 1.6343 32 1 7.8748 -6.4033 3.9932 33 1 5.8268 -1.5625 2.1318 34 1 3.4354 3.0909 1.2566 35 1 5.1315 2.5213 0.9441 36 1 4.0624 5.6459 -1.7750 37 1 5.7248 5.5703 -2.4060 38 1 4.4606 4.5278 -3.1016 39 1 5.1915 1.3681 -1.4991 40 1 3.5198 1.4554 -2.2054 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14247462_6580494.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:17:38 Heat of formation + Delta-G solvation = -101.005551 kcal Electronic energy + Delta-G solvation = -26681.603732 eV Core-core repulsion = 22659.096503 eV Total energy + Delta-G solvation = -4022.507228 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 311.129 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.76410 -42.22901 -40.33051 -39.72369 -37.82782 -37.78890 -37.06750 -34.47819 -32.11379 -31.46492 -29.29906 -27.96441 -27.30083 -26.96128 -25.74132 -23.77769 -22.67936 -21.54743 -21.09980 -20.78357 -19.71233 -19.13563 -18.59085 -18.06022 -17.71152 -17.39562 -17.04362 -16.75620 -16.23233 -16.13480 -15.92033 -15.46532 -15.19054 -14.89122 -14.86521 -14.62936 -14.44257 -14.04604 -13.80533 -13.77301 -13.64496 -13.49517 -13.32623 -13.06944 -12.73137 -12.56492 -12.31521 -12.21036 -12.00743 -11.84478 -11.70511 -11.11972 -10.66458 -10.62198 -10.42206 -10.03379 -9.22559 -4.81852 0.33897 0.81635 1.23963 1.53561 1.59528 1.67327 1.75216 2.00360 2.20346 2.32187 2.76238 2.90623 3.15454 3.28169 3.42152 3.54889 3.80112 3.84312 3.96222 4.18675 4.24959 4.25488 4.32298 4.37497 4.42137 4.48269 4.48831 4.50862 4.60917 4.63922 4.67066 4.73069 4.83358 4.99194 5.07457 5.14408 5.25688 5.63148 5.82514 6.09422 6.24542 6.43886 6.52103 6.55241 7.04898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.322 6.322 3 C 0.472 3.528 4 O -0.525 6.525 5 C 0.156 3.844 6 N -0.704 5.704 7 C 0.587 3.413 8 O -0.517 6.517 9 C -0.059 4.059 10 C -0.113 4.113 11 C -0.209 4.209 12 C 0.067 3.933 13 C -0.065 4.065 14 O -0.561 6.561 15 Si 0.787 3.213 16 N -0.515 5.515 17 C -0.106 4.106 18 C 0.067 3.933 19 H 0.096 0.904 20 O -0.385 6.385 21 C 0.022 3.978 22 C -0.141 4.141 23 H 0.119 0.881 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.417 0.583 27 H 0.150 0.850 28 H 0.165 0.835 29 H 0.106 0.894 30 H 0.401 0.599 31 H -0.301 1.301 32 H -0.282 1.282 33 H 0.427 0.573 34 H 0.096 0.904 35 H 0.136 0.864 36 H 0.050 0.950 37 H 0.101 0.899 38 H 0.046 0.954 39 H 0.119 0.881 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.303 -1.042 5.623 6.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.236 6.236 3 C 0.314 3.686 4 O -0.414 6.414 5 C 0.067 3.933 6 N -0.360 5.360 7 C 0.375 3.625 8 O -0.391 6.391 9 C -0.172 4.172 10 C -0.140 4.140 11 C -0.232 4.232 12 C -0.051 4.051 13 C -0.174 4.174 14 O -0.372 6.372 15 Si 0.691 3.309 16 N -0.112 5.112 17 C -0.143 4.143 18 C 0.008 3.992 19 H 0.114 0.886 20 O -0.303 6.303 21 C -0.074 4.074 22 C -0.180 4.180 23 H 0.137 0.863 24 H 0.083 0.917 25 H 0.078 0.922 26 H 0.255 0.745 27 H 0.167 0.833 28 H 0.183 0.817 29 H 0.124 0.876 30 H 0.252 0.748 31 H -0.228 1.228 32 H -0.208 1.208 33 H 0.267 0.733 34 H 0.115 0.885 35 H 0.154 0.846 36 H 0.069 0.931 37 H 0.119 0.881 38 H 0.065 0.935 39 H 0.137 0.863 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.824 -1.140 4.535 5.019 hybrid contribution 0.867 1.093 0.272 1.421 sum 2.691 -0.047 4.806 5.509 Atomic orbital electron populations 1.23504 0.76254 1.05075 1.02223 1.87019 1.23653 1.30966 1.81982 1.23503 0.91263 0.82031 0.71779 1.90669 1.66796 1.37108 1.46862 1.20976 0.85414 0.87516 0.99397 1.45552 1.43321 1.03553 1.43537 1.17193 0.81359 0.81977 0.81974 1.90893 1.31188 1.85699 1.31359 1.20224 1.01091 0.95022 1.00882 1.21444 1.01156 0.90354 1.01068 1.20881 1.01682 1.00320 1.00358 1.20192 0.99850 0.83779 1.01304 1.24733 0.82395 1.12396 0.97847 1.86522 1.18449 1.74774 1.57443 0.93452 0.88450 0.71587 0.77452 1.41872 1.30364 1.08373 1.30581 1.23511 1.04286 0.89211 0.97305 1.23543 0.90767 0.89625 0.95274 0.88611 1.87884 1.33813 1.46433 1.62166 1.23009 1.02830 0.90193 0.91408 1.23954 1.03128 0.96175 0.94778 0.86316 0.91727 0.92245 0.74465 0.83266 0.81734 0.87600 0.74770 1.22789 1.20815 0.73307 0.88503 0.84561 0.93099 0.88102 0.93527 0.86313 0.91067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 10.56 113.37 1.20 1.30 16 2 O -0.32 -3.07 6.30 -43.46 -0.27 -3.34 16 3 C 0.47 3.93 6.98 71.24 0.50 4.43 16 4 O -0.52 -6.01 14.99 21.95 0.33 -5.68 16 5 C 0.16 0.37 1.22 3.38 0.00 0.37 16 6 N -0.70 0.31 5.31 -427.86 -2.27 -1.96 16 7 C 0.59 3.19 7.14 86.45 0.62 3.81 16 8 O -0.52 -6.33 13.41 19.78 0.27 -6.06 16 9 C -0.06 -0.20 7.06 40.35 0.28 0.09 16 10 C -0.11 -0.49 10.65 22.57 0.24 -0.25 16 11 C -0.21 -0.21 9.32 22.01 0.21 -0.01 16 12 C 0.07 -0.05 6.51 41.34 0.27 0.22 16 13 C -0.07 0.34 3.07 71.24 0.22 0.55 16 14 O -0.56 1.63 12.86 -148.98 -1.92 -0.28 16 15 Si 0.79 -4.06 30.54 68.60 2.10 -1.96 16 16 N -0.51 0.83 5.99 -171.93 -1.03 -0.20 16 17 C -0.11 0.16 6.96 31.12 0.22 0.38 16 18 C 0.07 0.13 3.90 31.18 0.12 0.25 16 19 H 0.10 0.36 7.06 -2.39 -0.02 0.34 16 20 O -0.38 -1.16 10.72 -148.98 -1.60 -2.75 16 21 C 0.02 -0.02 10.85 113.37 1.23 1.21 16 22 C -0.14 -0.38 7.29 31.18 0.23 -0.15 16 23 H 0.12 0.06 8.14 -2.39 -0.02 0.04 16 24 H 0.06 0.20 8.13 -2.39 -0.02 0.18 16 25 H 0.06 0.28 8.13 -2.39 -0.02 0.26 16 26 H 0.42 -3.02 7.77 -92.71 -0.72 -3.74 16 27 H 0.15 0.64 8.06 -2.91 -0.02 0.61 16 28 H 0.17 -0.49 6.17 -2.91 -0.02 -0.51 16 29 H 0.11 -1.09 7.96 -2.38 -0.02 -1.11 16 30 H 0.40 -4.30 8.74 -74.05 -0.65 -4.94 16 31 H -0.30 -1.02 7.11 99.48 0.71 -0.31 16 32 H -0.28 0.43 7.11 99.48 0.71 1.14 16 33 H 0.43 -3.09 8.19 -92.71 -0.76 -3.85 16 34 H 0.10 -0.12 7.84 -2.39 -0.02 -0.14 16 35 H 0.14 -0.86 8.13 -2.39 -0.02 -0.88 16 36 H 0.05 -0.09 8.14 -2.39 -0.02 -0.11 16 37 H 0.10 -0.34 8.14 -2.39 -0.02 -0.36 16 38 H 0.05 -0.06 8.14 -2.38 -0.02 -0.08 16 39 H 0.12 0.15 8.14 -2.39 -0.02 0.13 16 40 H 0.07 0.38 8.09 -2.39 -0.02 0.36 16 Total: 0.00 -22.94 340.81 -0.06 -22.99 By element: Atomic # 1 Polarization: -11.97 SS G_CDS: -0.98 Total: -12.95 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: 5.33 Total: 12.21 kcal Atomic # 7 Polarization: 1.14 SS G_CDS: -3.30 Total: -2.16 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -3.19 Total: -18.13 kcal Atomic # 14 Polarization: -4.06 SS G_CDS: 2.10 Total: -1.96 kcal Total: -22.94 -0.06 -22.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14247462_6580494.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.013 kcal (2) G-P(sol) polarization free energy of solvation -22.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds