Wall clock time and date at job start Sun Mar 7 2021 00:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34235 * 116.99611 * 2 1 4 4 O 1.20826 * 120.00415 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99738 * 179.97438 * 3 2 1 6 6 N 1.46499 * 112.85211 * 324.15846 * 5 3 2 7 7 C 1.34773 * 120.00117 * 284.44376 * 6 5 3 8 8 O 1.21705 * 120.00124 * 5.04645 * 7 6 5 9 9 C 1.46583 * 120.00315 * 185.04668 * 7 6 5 10 10 C 1.36648 * 125.46484 * 180.02562 * 9 7 6 11 11 C 1.37467 * 113.29852 * 179.97438 * 10 9 7 12 12 C 1.50701 * 122.44863 * 180.02562 * 11 10 9 13 13 C 1.33818 * 115.10227 * 0.02562 * 11 10 9 14 14 C 1.50704 * 124.52241 * 180.02562 * 13 11 10 15 15 O 1.42897 * 109.47267 * 29.99386 * 14 13 11 16 16 Si 1.86291 * 109.47207 * 149.99638 * 14 13 11 17 17 S 1.70618 * 110.95539 * 359.75904 * 13 11 10 18 18 C 1.53785 * 113.61077 * 192.96300 * 5 3 2 19 19 C 1.53782 * 87.08382 * 270.79963 * 18 5 3 20 20 H 1.09000 * 113.60964 * 89.19854 * 19 18 5 21 21 O 1.42893 * 113.61864 * 220.02323 * 19 18 5 22 22 C 1.42900 * 113.99712 * 210.00364 * 21 19 18 23 23 C 1.53775 * 113.68999 * 95.43090 * 5 3 2 24 24 H 1.08995 * 109.47349 * 299.99701 * 1 2 3 25 25 H 1.08998 * 109.47079 * 59.99977 * 1 2 3 26 26 H 1.08997 * 109.46745 * 179.97438 * 1 2 3 27 27 H 0.97001 * 120.00133 * 104.16723 * 6 5 3 28 28 H 1.08002 * 123.34631 * 359.97438 * 10 9 7 29 29 H 1.09003 * 109.46597 * 89.97481 * 12 11 10 30 30 H 1.08997 * 109.47300 * 209.97240 * 12 11 10 31 31 H 1.08996 * 109.46849 * 329.98018 * 12 11 10 32 32 H 1.09004 * 109.46546 * 269.99911 * 14 13 11 33 33 H 0.96702 * 114.00191 * 60.00362 * 15 14 13 34 34 H 1.48500 * 110.00158 * 58.67959 * 16 14 13 35 35 H 1.48499 * 110.00126 * 179.97438 * 16 14 13 36 36 H 1.09001 * 113.61865 * 25.35487 * 18 5 3 37 37 H 1.09005 * 113.61367 * 156.16943 * 18 5 3 38 38 H 1.08996 * 109.47157 * 299.99066 * 22 21 19 39 39 H 1.08997 * 109.47661 * 60.00112 * 22 21 19 40 40 H 1.09006 * 109.46557 * 179.97438 * 22 21 19 41 41 H 1.09003 * 113.61747 * 203.67548 * 23 5 3 42 42 H 1.09001 * 113.61556 * 334.57600 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 7 4.1914 0.2121 0.7915 7 6 4.1808 0.2787 2.1376 8 8 3.5735 1.1722 2.6979 9 6 4.9007 -0.7251 2.9268 10 6 4.9640 -0.7647 4.2913 11 6 5.7084 -1.8162 4.7707 12 6 5.9133 -2.0562 6.2443 13 6 6.2378 -2.6110 3.8334 14 6 7.0876 -3.8220 4.1208 15 8 6.6958 -4.3930 5.3708 16 14 6.8573 -5.0783 2.7647 17 16 5.8162 -2.0748 2.2695 18 6 4.1093 2.6786 0.3166 19 6 4.0442 2.9582 -1.1942 20 1 3.0868 3.3629 -1.5224 21 8 5.1598 3.7028 -1.6872 22 6 4.8553 4.5292 -2.8125 23 6 4.1769 1.4401 -1.4011 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 4.6095 -0.5417 0.3466 28 1 4.4775 -0.0418 4.9294 29 1 5.1192 -2.7008 6.6212 30 1 6.8782 -2.5376 6.4033 31 1 5.8905 -1.1040 6.7741 32 1 8.1359 -3.5270 4.1688 33 1 5.7725 -4.6789 5.4005 34 1 7.2312 -4.4864 1.4551 35 1 7.6906 -6.2772 3.0362 36 1 3.4241 3.2900 0.9038 37 1 5.1228 2.6745 0.7179 38 1 4.4955 3.9081 -3.6327 39 1 4.0848 5.2492 -2.5368 40 1 5.7536 5.0612 -3.1261 41 1 5.2093 1.0975 -1.4708 42 1 3.5461 1.0517 -2.2007 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14247462_6739946.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:17:46 Heat of formation + Delta-G solvation = -121.610250 kcal Electronic energy + Delta-G solvation = -28243.058214 eV Core-core repulsion = 24090.471897 eV Total energy + Delta-G solvation = -4152.586317 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 342.106 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.51517 -40.72053 -40.11817 -39.55119 -37.73403 -37.40887 -36.99092 -34.41821 -32.10140 -30.27987 -29.35772 -28.00273 -27.15449 -26.92490 -25.58834 -24.42158 -23.08665 -21.81566 -20.73184 -20.25284 -19.48923 -19.16839 -18.04578 -17.65178 -17.57598 -17.38519 -17.14696 -16.91746 -16.49107 -16.23492 -16.05935 -15.78887 -15.41546 -15.08888 -14.94085 -14.58762 -14.46400 -14.35347 -14.00955 -13.74927 -13.55962 -13.53437 -13.29102 -13.12897 -13.05101 -13.01894 -12.59852 -12.48063 -12.30463 -12.24152 -12.02784 -11.82242 -11.78710 -11.72690 -11.10695 -10.76206 -10.62211 -10.42065 -9.72097 -9.48133 -5.21894 -0.66852 0.24198 0.66093 0.97079 1.03728 1.27054 1.42715 1.52451 1.75981 1.79915 2.12379 2.75204 3.01932 3.17063 3.20349 3.47749 3.49334 3.55591 3.73497 3.98685 4.07117 4.13874 4.21733 4.23393 4.32418 4.34065 4.39119 4.42581 4.51186 4.55865 4.56820 4.62749 4.73801 4.76345 4.77750 4.82912 4.95304 5.00961 5.09720 5.31125 5.36127 5.43393 6.12367 6.17823 6.34542 6.63664 6.97055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.350 6.350 3 C 0.479 3.521 4 O -0.489 6.489 5 C 0.156 3.844 6 N -0.707 5.707 7 C 0.597 3.403 8 O -0.513 6.513 9 C -0.263 4.263 10 C -0.042 4.042 11 C -0.091 4.091 12 C -0.096 4.096 13 C -0.235 4.235 14 C -0.028 4.028 15 O -0.529 6.529 16 Si 0.658 3.342 17 S 0.198 5.802 18 C -0.108 4.108 19 C 0.065 3.935 20 H 0.103 0.897 21 O -0.370 6.370 22 C 0.027 3.973 23 C -0.142 4.142 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.105 0.895 27 H 0.406 0.594 28 H 0.156 0.844 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.062 0.938 32 H 0.125 0.875 33 H 0.381 0.619 34 H -0.236 1.236 35 H -0.234 1.234 36 H 0.098 0.902 37 H 0.110 0.890 38 H 0.044 0.956 39 H 0.046 0.954 40 H 0.089 0.911 41 H 0.119 0.881 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.334 -4.615 -3.067 5.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.266 6.266 3 C 0.318 3.682 4 O -0.374 6.374 5 C 0.068 3.932 6 N -0.361 5.361 7 C 0.384 3.616 8 O -0.389 6.389 9 C -0.383 4.383 10 C -0.076 4.076 11 C -0.104 4.104 12 C -0.154 4.154 13 C -0.354 4.354 14 C -0.141 4.141 15 O -0.335 6.335 16 Si 0.558 3.442 17 S 0.466 5.534 18 C -0.147 4.147 19 C 0.007 3.993 20 H 0.120 0.880 21 O -0.288 6.288 22 C -0.069 4.069 23 C -0.180 4.180 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.123 0.877 27 H 0.243 0.757 28 H 0.173 0.827 29 H 0.091 0.909 30 H 0.103 0.897 31 H 0.081 0.919 32 H 0.142 0.858 33 H 0.229 0.771 34 H -0.161 1.161 35 H -0.157 1.157 36 H 0.117 0.883 37 H 0.128 0.872 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.108 0.892 41 H 0.137 0.863 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.498 -4.532 -4.577 6.460 hybrid contribution -0.380 0.636 1.327 1.520 sum 0.118 -3.896 -3.250 5.075 Atomic orbital electron populations 1.23366 0.75603 1.04154 1.02865 1.86497 1.23888 1.32665 1.83554 1.23167 0.90603 0.81915 0.72472 1.90696 1.66054 1.36332 1.44350 1.21033 0.85822 0.90848 0.95529 1.45584 1.59426 1.25507 1.05581 1.16988 0.79503 0.83875 0.81261 1.90895 1.42445 1.34883 1.70675 1.24419 1.11577 1.04210 0.98071 1.20746 0.96382 0.97562 0.92871 1.18713 0.99176 0.94479 0.98000 1.20646 1.03797 1.02103 0.88878 1.24495 1.08141 1.04842 0.97921 1.24476 0.98900 0.95089 0.95592 1.86534 1.33559 1.80809 1.32593 0.94810 0.91613 0.81130 0.76664 1.83036 1.44831 1.19757 1.05791 1.23452 1.03392 0.91387 0.96423 1.23578 0.91060 0.90063 0.94643 0.87969 1.87947 1.33374 1.59538 1.47917 1.22876 1.02175 0.93879 0.88009 1.23879 1.03290 0.98116 0.92727 0.91577 0.91612 0.87666 0.75737 0.82669 0.90886 0.89654 0.91899 0.85829 0.77086 1.16063 1.15711 0.88329 0.87178 0.93760 0.93551 0.89222 0.86317 0.89308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.00 10.56 101.05 1.07 1.07 16 2 O -0.35 -0.80 10.42 -39.27 -0.41 -1.21 16 3 C 0.48 1.62 6.77 36.01 0.24 1.86 16 4 O -0.49 -2.74 15.12 -18.75 -0.28 -3.02 16 5 C 0.16 0.21 1.12 -132.16 -0.15 0.06 16 6 N -0.71 -0.40 5.08 -49.25 -0.25 -0.65 16 7 C 0.60 1.73 7.44 -12.90 -0.10 1.63 16 8 O -0.51 -3.27 15.86 5.18 0.08 -3.19 16 9 C -0.26 -0.34 6.45 -36.79 -0.24 -0.58 16 10 C -0.04 -0.05 9.80 -40.44 -0.40 -0.45 16 11 C -0.09 0.00 5.75 -106.45 -0.61 -0.61 16 12 C -0.10 0.10 8.68 36.01 0.31 0.41 16 13 C -0.23 0.18 5.54 -35.86 -0.20 -0.02 16 14 C -0.03 0.05 2.76 36.01 0.10 0.15 16 15 O -0.53 0.92 9.85 -35.23 -0.35 0.57 16 16 Si 0.66 -1.52 31.31 -169.99 -5.32 -6.84 16 17 S 0.20 -0.21 19.79 -107.50 -2.13 -2.33 16 18 C -0.11 -0.24 5.80 -25.92 -0.15 -0.39 16 19 C 0.07 0.06 3.92 -25.92 -0.10 -0.04 16 20 H 0.10 0.10 7.35 -51.93 -0.38 -0.29 16 21 O -0.37 -0.63 10.71 -35.23 -0.38 -1.01 16 22 C 0.03 -0.02 10.85 101.05 1.10 1.08 16 23 C -0.14 0.14 7.25 -25.92 -0.19 -0.05 16 24 H 0.07 0.05 8.13 -51.93 -0.42 -0.37 16 25 H 0.07 -0.03 8.13 -51.93 -0.42 -0.46 16 26 H 0.10 -0.28 8.14 -51.93 -0.42 -0.70 16 27 H 0.41 -0.80 7.89 -40.82 -0.32 -1.12 16 28 H 0.16 0.19 8.06 -52.49 -0.42 -0.23 16 29 H 0.07 -0.15 8.14 -51.93 -0.42 -0.58 16 30 H 0.08 -0.03 6.41 -51.93 -0.33 -0.36 16 31 H 0.06 -0.06 8.13 -51.93 -0.42 -0.48 16 32 H 0.12 -0.17 7.96 -51.93 -0.41 -0.59 16 33 H 0.38 -1.92 8.66 45.56 0.39 -1.53 16 34 H -0.24 0.18 7.09 56.52 0.40 0.58 16 35 H -0.23 -0.13 7.11 56.52 0.40 0.27 16 36 H 0.10 0.40 7.64 -51.93 -0.40 0.00 16 37 H 0.11 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.04 -0.07 8.14 -51.93 -0.42 -0.50 16 39 H 0.05 -0.05 8.14 -51.93 -0.42 -0.47 16 40 H 0.09 -0.15 8.14 -51.93 -0.42 -0.57 16 41 H 0.12 -0.26 8.14 -51.93 -0.42 -0.68 16 42 H 0.09 -0.19 8.10 -51.93 -0.42 -0.61 16 LS Contribution 368.48 15.07 5.55 5.55 Total: 0.00 -8.37 368.48 -8.51 -16.88 By element: Atomic # 1 Polarization: -3.15 SS G_CDS: -5.72 Total: -8.87 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: 0.69 Total: 4.11 kcal Atomic # 7 Polarization: -0.40 SS G_CDS: -0.25 Total: -0.65 kcal Atomic # 8 Polarization: -6.52 SS G_CDS: -1.33 Total: -7.85 kcal Atomic # 14 Polarization: -1.52 SS G_CDS: -5.32 Total: -6.84 kcal Atomic # 16 Polarization: -0.21 SS G_CDS: -2.13 Total: -2.33 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -8.37 -8.51 -16.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14247462_6739946.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.727 kcal (2) G-P(sol) polarization free energy of solvation -8.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds