Wall clock time and date at job start Sun Mar 7 2021 00:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34235 * 116.99611 * 2 1 4 4 O 1.20826 * 120.00415 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99738 * 179.97438 * 3 2 1 6 6 N 1.46499 * 112.85211 * 324.15846 * 5 3 2 7 7 C 1.34773 * 120.00117 * 284.44376 * 6 5 3 8 8 O 1.21705 * 120.00124 * 5.04645 * 7 6 5 9 9 C 1.46583 * 120.00315 * 185.04668 * 7 6 5 10 10 C 1.36648 * 125.46484 * 180.02562 * 9 7 6 11 11 C 1.37467 * 113.29852 * 179.97438 * 10 9 7 12 12 C 1.50701 * 122.44863 * 180.02562 * 11 10 9 13 13 C 1.33818 * 115.10227 * 0.02562 * 11 10 9 14 14 C 1.50704 * 124.52241 * 180.02562 * 13 11 10 15 15 O 1.42897 * 109.47267 * 29.99386 * 14 13 11 16 16 Si 1.86291 * 109.47207 * 149.99638 * 14 13 11 17 17 S 1.70618 * 110.95539 * 359.75904 * 13 11 10 18 18 C 1.53785 * 113.61077 * 192.96300 * 5 3 2 19 19 C 1.53782 * 87.08382 * 270.79963 * 18 5 3 20 20 H 1.09000 * 113.60964 * 89.19854 * 19 18 5 21 21 O 1.42893 * 113.61864 * 220.02323 * 19 18 5 22 22 C 1.42900 * 113.99712 * 210.00364 * 21 19 18 23 23 C 1.53775 * 113.68999 * 95.43090 * 5 3 2 24 24 H 1.08995 * 109.47349 * 299.99701 * 1 2 3 25 25 H 1.08998 * 109.47079 * 59.99977 * 1 2 3 26 26 H 1.08997 * 109.46745 * 179.97438 * 1 2 3 27 27 H 0.97001 * 120.00133 * 104.16723 * 6 5 3 28 28 H 1.08002 * 123.34631 * 359.97438 * 10 9 7 29 29 H 1.09003 * 109.46597 * 89.97481 * 12 11 10 30 30 H 1.08997 * 109.47300 * 209.97240 * 12 11 10 31 31 H 1.08996 * 109.46849 * 329.98018 * 12 11 10 32 32 H 1.09004 * 109.46546 * 269.99911 * 14 13 11 33 33 H 0.96702 * 114.00191 * 60.00362 * 15 14 13 34 34 H 1.48500 * 110.00158 * 58.67959 * 16 14 13 35 35 H 1.48499 * 110.00126 * 179.97438 * 16 14 13 36 36 H 1.09001 * 113.61865 * 25.35487 * 18 5 3 37 37 H 1.09005 * 113.61367 * 156.16943 * 18 5 3 38 38 H 1.08996 * 109.47157 * 299.99066 * 22 21 19 39 39 H 1.08997 * 109.47661 * 60.00112 * 22 21 19 40 40 H 1.09006 * 109.46557 * 179.97438 * 22 21 19 41 41 H 1.09003 * 113.61747 * 203.67548 * 23 5 3 42 42 H 1.09001 * 113.61556 * 334.57600 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 7 4.1914 0.2121 0.7915 7 6 4.1808 0.2787 2.1376 8 8 3.5735 1.1722 2.6979 9 6 4.9007 -0.7251 2.9268 10 6 4.9640 -0.7647 4.2913 11 6 5.7084 -1.8162 4.7707 12 6 5.9133 -2.0562 6.2443 13 6 6.2378 -2.6110 3.8334 14 6 7.0876 -3.8220 4.1208 15 8 6.6958 -4.3930 5.3708 16 14 6.8573 -5.0783 2.7647 17 16 5.8162 -2.0748 2.2695 18 6 4.1093 2.6786 0.3166 19 6 4.0442 2.9582 -1.1942 20 1 3.0868 3.3629 -1.5224 21 8 5.1598 3.7028 -1.6872 22 6 4.8553 4.5292 -2.8125 23 6 4.1769 1.4401 -1.4011 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 4.6095 -0.5417 0.3466 28 1 4.4775 -0.0418 4.9294 29 1 5.1192 -2.7008 6.6212 30 1 6.8782 -2.5376 6.4033 31 1 5.8905 -1.1040 6.7741 32 1 8.1359 -3.5270 4.1688 33 1 5.7725 -4.6789 5.4005 34 1 7.2312 -4.4864 1.4551 35 1 7.6906 -6.2772 3.0362 36 1 3.4241 3.2900 0.9038 37 1 5.1228 2.6745 0.7179 38 1 4.4955 3.9081 -3.6327 39 1 4.0848 5.2492 -2.5368 40 1 5.7536 5.0612 -3.1261 41 1 5.2093 1.0975 -1.4708 42 1 3.5461 1.0517 -2.2007 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14247462_6739946.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:17:45 Heat of formation + Delta-G solvation = -121.564085 kcal Electronic energy + Delta-G solvation = -28243.056212 eV Core-core repulsion = 24090.471897 eV Total energy + Delta-G solvation = -4152.584315 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 342.106 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.67747 -40.89253 -40.16502 -39.61758 -37.86343 -37.40161 -37.11661 -34.57737 -32.10008 -30.20692 -29.43353 -27.99270 -27.20428 -26.95008 -25.61793 -24.44750 -23.19348 -21.91458 -20.87703 -20.25433 -19.52416 -19.29041 -18.22435 -17.75059 -17.54278 -17.43418 -17.25855 -16.97785 -16.47872 -16.26024 -16.07808 -15.90224 -15.45202 -15.15709 -14.98941 -14.56162 -14.48544 -14.44095 -13.94492 -13.76872 -13.67741 -13.49434 -13.34561 -13.11522 -13.08130 -12.98073 -12.61760 -12.43331 -12.38411 -12.25357 -12.09064 -11.98593 -11.87711 -11.75492 -11.32046 -10.70804 -10.64227 -10.56232 -9.70331 -9.43126 -5.04425 -0.71239 0.25226 0.66482 0.76398 1.07763 1.28779 1.43154 1.56202 1.65605 1.91318 1.99428 2.72358 2.96656 3.09723 3.37353 3.39226 3.44348 3.60930 3.70146 3.92846 4.08318 4.17797 4.21784 4.25775 4.36623 4.42935 4.45351 4.49176 4.51857 4.59368 4.60113 4.62831 4.68502 4.73350 4.81497 4.85439 4.91757 4.99010 5.01636 5.14743 5.38978 5.48426 6.11130 6.11758 6.42974 6.68321 6.83230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.352 6.352 3 C 0.475 3.525 4 O -0.520 6.520 5 C 0.153 3.847 6 N -0.693 5.693 7 C 0.595 3.405 8 O -0.558 6.558 9 C -0.284 4.284 10 C -0.051 4.051 11 C -0.100 4.100 12 C -0.092 4.092 13 C -0.231 4.231 14 C -0.032 4.032 15 O -0.539 6.539 16 Si 0.729 3.271 17 S 0.245 5.755 18 C -0.114 4.114 19 C 0.066 3.934 20 H 0.098 0.902 21 O -0.386 6.386 22 C 0.021 3.979 23 C -0.123 4.123 24 H 0.053 0.947 25 H 0.070 0.930 26 H 0.135 0.865 27 H 0.420 0.580 28 H 0.146 0.854 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.059 0.941 32 H 0.123 0.877 33 H 0.396 0.604 34 H -0.251 1.251 35 H -0.274 1.274 36 H 0.070 0.930 37 H 0.108 0.892 38 H 0.057 0.943 39 H 0.045 0.955 40 H 0.099 0.901 41 H 0.138 0.862 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.209 -6.289 -4.236 7.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.268 6.268 3 C 0.317 3.683 4 O -0.407 6.407 5 C 0.064 3.936 6 N -0.347 5.347 7 C 0.383 3.617 8 O -0.437 6.437 9 C -0.404 4.404 10 C -0.085 4.085 11 C -0.112 4.112 12 C -0.151 4.151 13 C -0.351 4.351 14 C -0.144 4.144 15 O -0.347 6.347 16 Si 0.631 3.369 17 S 0.514 5.486 18 C -0.152 4.152 19 C 0.008 3.992 20 H 0.116 0.884 21 O -0.305 6.305 22 C -0.075 4.075 23 C -0.161 4.161 24 H 0.072 0.928 25 H 0.089 0.911 26 H 0.153 0.847 27 H 0.259 0.741 28 H 0.163 0.837 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.078 0.922 32 H 0.140 0.860 33 H 0.246 0.754 34 H -0.177 1.177 35 H -0.200 1.200 36 H 0.089 0.911 37 H 0.126 0.874 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.117 0.883 41 H 0.156 0.844 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.036 -6.232 -5.767 8.554 hybrid contribution -0.533 1.109 1.721 2.115 sum 0.503 -5.123 -4.046 6.548 Atomic orbital electron populations 1.23611 0.74446 1.06041 1.02530 1.86492 1.25112 1.32018 1.83135 1.23564 0.91364 0.81794 0.71587 1.90677 1.66869 1.37292 1.45869 1.21048 0.84965 0.90461 0.97110 1.45460 1.58677 1.25685 1.04919 1.17262 0.78989 0.83560 0.81847 1.90872 1.44494 1.36749 1.71587 1.24363 1.12668 1.05202 0.98197 1.20801 0.96744 0.97902 0.93021 1.18743 0.99436 0.94383 0.98666 1.20627 1.03939 1.02139 0.88346 1.24718 1.07470 1.04755 0.98157 1.24621 0.98680 0.94914 0.96176 1.86510 1.35004 1.80735 1.32484 0.93993 0.90311 0.77945 0.74682 1.82804 1.43260 1.17779 1.04807 1.23420 1.02545 0.91966 0.97303 1.23529 0.90793 0.91444 0.93466 0.88409 1.87914 1.33732 1.60014 1.48828 1.23032 1.02769 0.93981 0.87721 1.23862 1.04468 0.96286 0.91460 0.92818 0.91109 0.84670 0.74072 0.83659 0.89689 0.90093 0.92244 0.85978 0.75369 1.17684 1.19979 0.91086 0.87402 0.92419 0.93622 0.88284 0.84434 0.87374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.00 10.56 113.37 1.20 1.20 16 2 O -0.35 -1.68 10.42 -51.46 -0.54 -2.21 16 3 C 0.48 3.71 6.77 71.24 0.48 4.19 16 4 O -0.52 -6.83 15.12 21.96 0.33 -6.50 16 5 C 0.15 0.50 1.12 3.38 0.00 0.51 16 6 N -0.69 -0.91 5.08 -427.94 -2.17 -3.09 16 7 C 0.60 4.15 7.44 86.42 0.64 4.79 16 8 O -0.56 -8.51 15.86 -4.36 -0.07 -8.58 16 9 C -0.28 -0.88 6.45 24.08 0.16 -0.72 16 10 C -0.05 -0.17 9.80 21.72 0.21 0.04 16 11 C -0.10 0.00 5.75 -21.05 -0.12 -0.13 16 12 C -0.09 0.18 8.68 71.24 0.62 0.80 16 13 C -0.23 0.53 5.54 24.68 0.14 0.67 16 14 C -0.03 0.14 2.76 71.24 0.20 0.33 16 15 O -0.54 2.38 9.85 -148.98 -1.47 0.91 16 16 Si 0.73 -4.14 31.31 68.60 2.15 -2.00 16 17 S 0.24 -0.76 19.79 -56.49 -1.12 -1.88 16 18 C -0.11 -0.71 5.80 31.12 0.18 -0.53 16 19 C 0.07 0.16 3.92 31.12 0.12 0.28 16 20 H 0.10 0.30 7.35 -2.39 -0.02 0.28 16 21 O -0.39 -1.38 10.71 -148.98 -1.60 -2.97 16 22 C 0.02 -0.03 10.85 113.37 1.23 1.20 16 23 C -0.12 0.34 7.25 31.12 0.23 0.57 16 24 H 0.05 0.15 8.13 -2.39 -0.02 0.13 16 25 H 0.07 -0.06 8.13 -2.39 -0.02 -0.08 16 26 H 0.14 -0.86 8.14 -2.39 -0.02 -0.88 16 27 H 0.42 -2.06 7.89 -92.71 -0.73 -2.79 16 28 H 0.15 0.69 8.06 -2.91 -0.02 0.66 16 29 H 0.08 -0.40 8.14 -2.39 -0.02 -0.41 16 30 H 0.08 -0.07 6.41 -2.39 -0.02 -0.08 16 31 H 0.06 -0.08 8.13 -2.39 -0.02 -0.10 16 32 H 0.12 -0.45 7.96 -2.39 -0.02 -0.47 16 33 H 0.40 -4.51 8.66 -74.06 -0.64 -5.15 16 34 H -0.25 0.78 7.09 99.48 0.71 1.49 16 35 H -0.27 -0.32 7.11 99.48 0.71 0.38 16 36 H 0.07 0.82 7.64 -2.39 -0.02 0.80 16 37 H 0.11 0.65 8.14 -2.38 -0.02 0.63 16 38 H 0.06 -0.24 8.14 -2.39 -0.02 -0.26 16 39 H 0.05 -0.07 8.14 -2.39 -0.02 -0.09 16 40 H 0.10 -0.36 8.14 -2.38 -0.02 -0.38 16 41 H 0.14 -0.88 8.14 -2.39 -0.02 -0.89 16 42 H 0.11 -0.66 8.10 -2.39 -0.02 -0.68 16 Total: 0.00 -21.52 368.48 0.53 -20.99 By element: Atomic # 1 Polarization: -7.61 SS G_CDS: -0.27 Total: -7.88 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: 5.28 Total: 13.20 kcal Atomic # 7 Polarization: -0.91 SS G_CDS: -2.17 Total: -3.09 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -3.34 Total: -19.35 kcal Atomic # 14 Polarization: -4.14 SS G_CDS: 2.15 Total: -2.00 kcal Atomic # 16 Polarization: -0.76 SS G_CDS: -1.12 Total: -1.88 kcal Total: -21.52 0.53 -20.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14247462_6739946.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.577 kcal (2) G-P(sol) polarization free energy of solvation -21.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds