Wall clock time and date at job start Sun Mar 7 2021 00:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34228 * 117.00352 * 2 1 4 4 O 1.20824 * 120.00047 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00098 * 180.02562 * 3 2 1 6 6 N 1.46502 * 112.84938 * 324.05859 * 5 3 2 7 7 C 1.34778 * 120.00375 * 293.64511 * 6 5 3 8 8 O 1.21636 * 119.99654 * 354.98254 * 7 6 5 9 9 C 1.47190 * 119.99983 * 174.97702 * 7 6 5 10 10 C 1.36008 * 123.46525 * 0.24736 * 9 7 6 11 11 S 1.70442 * 110.81853 * 180.25132 * 10 9 7 12 12 C 1.75500 * 92.44474 * 359.72328 * 11 10 9 13 13 C 1.50698 * 124.71315 * 179.97438 * 12 11 10 14 14 O 1.42901 * 109.47526 * 244.99824 * 13 12 11 15 15 Si 1.86300 * 109.47113 * 5.00295 * 13 12 11 16 16 C 1.32769 * 110.57501 * 359.97438 * 12 11 10 17 17 C 1.53779 * 113.61304 * 192.86729 * 5 3 2 18 18 C 1.53781 * 87.07930 * 270.79810 * 17 5 3 19 19 H 1.08995 * 113.61233 * 89.11786 * 18 17 5 20 20 O 1.42899 * 113.61162 * 219.93638 * 18 17 5 21 21 C 1.42905 * 114.00045 * 209.99944 * 20 18 17 22 22 C 1.53775 * 87.08043 * 334.56717 * 18 17 5 23 23 H 1.09001 * 109.47663 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46886 * 300.00258 * 1 2 3 25 25 H 1.09011 * 109.47087 * 59.99603 * 1 2 3 26 26 H 0.96998 * 120.00033 * 113.64408 * 6 5 3 27 27 H 1.08009 * 124.58739 * 359.97438 * 10 9 7 28 28 H 1.09002 * 109.47169 * 125.00216 * 13 12 11 29 29 H 0.96701 * 113.99691 * 59.99897 * 14 13 12 30 30 H 1.48499 * 110.00203 * 180.02562 * 15 13 12 31 31 H 1.48504 * 109.99676 * 301.31596 * 15 13 12 32 32 H 1.08011 * 123.45591 * 180.02562 * 16 12 11 33 33 H 1.08996 * 113.61801 * 25.34635 * 17 5 3 34 34 H 1.09007 * 113.61725 * 156.24827 * 17 5 3 35 35 H 1.08996 * 109.47551 * 180.02562 * 21 20 18 36 36 H 1.08998 * 109.46892 * 300.00078 * 21 20 18 37 37 H 1.08999 * 109.46954 * 59.99731 * 21 20 18 38 38 H 1.09005 * 113.61925 * 270.87942 * 22 18 17 39 39 H 1.09002 * 113.61452 * 139.98004 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2747 -0.0006 6 7 4.1919 0.2128 0.7914 7 6 4.0242 0.1812 2.1283 8 8 3.4308 1.0834 2.6882 9 6 4.5589 -0.9450 2.9107 10 6 5.2367 -1.9869 2.3586 11 16 5.7016 -3.1089 3.5545 12 6 4.9764 -2.1557 4.8373 13 6 4.9813 -2.5348 6.2959 14 8 3.6415 -2.7769 6.7298 15 14 5.9992 -4.0771 6.5332 16 6 4.4228 -1.0543 4.3443 17 6 4.1098 2.6787 0.3133 18 6 4.0436 2.9563 -1.1978 19 1 3.0856 3.3593 -1.5261 20 8 5.1580 3.7017 -1.6922 21 6 4.8521 4.5264 -2.8185 22 6 4.1760 1.4380 -1.4028 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 4.7268 -0.4677 0.3536 27 1 5.4475 -2.0916 1.3045 28 1 5.4115 -1.7220 6.8811 29 1 3.1958 -3.4893 6.2513 30 1 6.0115 -4.4618 7.9674 31 1 5.4416 -5.1843 5.7156 32 1 3.9181 -0.3180 4.9525 33 1 3.4250 3.2909 0.9001 34 1 5.1240 2.6751 0.7126 35 1 5.7496 5.0585 -3.1337 36 1 4.4928 3.9037 -3.6377 37 1 4.0806 5.2455 -2.5433 38 1 5.2084 1.0952 -1.4728 39 1 3.5446 1.0485 -2.2015 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14247462_6894386.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:17:49 Heat of formation + Delta-G solvation = -118.426870 kcal Electronic energy + Delta-G solvation = -26189.483972 eV Core-core repulsion = 22192.573315 eV Total energy + Delta-G solvation = -3996.910656 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 328.090 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.51096 -40.71522 -39.94991 -38.83223 -37.72157 -37.25584 -36.94762 -34.40071 -31.76719 -29.30558 -27.96150 -27.12260 -27.01115 -26.54664 -25.09231 -23.16913 -22.05270 -20.72836 -20.54832 -19.49901 -18.72788 -18.16375 -18.01852 -17.62912 -17.54433 -17.21048 -16.89188 -16.42458 -16.13146 -15.82574 -15.79321 -15.47790 -15.06294 -14.96378 -14.40848 -14.34525 -14.07788 -13.79248 -13.70589 -13.62142 -13.50581 -13.26374 -13.03432 -12.74230 -12.57062 -12.42284 -12.25956 -12.03041 -11.82737 -11.80335 -11.67586 -10.96593 -10.76051 -10.60832 -10.37089 -10.06600 -9.56503 -5.13746 -0.41625 0.29590 0.64300 0.83544 0.98837 1.15034 1.47706 1.52713 1.82061 1.85722 2.29243 2.77335 3.03114 3.19676 3.22188 3.48030 3.50198 3.59010 3.78550 3.90298 4.02140 4.13653 4.23453 4.23638 4.32762 4.34392 4.42556 4.43474 4.50367 4.56814 4.63639 4.66392 4.76266 4.77905 4.96976 5.00250 5.12218 5.20153 5.32357 6.12649 6.26965 6.27187 6.64965 7.07961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.351 6.351 3 C 0.479 3.521 4 O -0.489 6.489 5 C 0.158 3.842 6 N -0.706 5.706 7 C 0.582 3.418 8 O -0.519 6.519 9 C -0.154 4.154 10 C -0.204 4.204 11 S 0.202 5.798 12 C -0.242 4.242 13 C -0.033 4.033 14 O -0.522 6.522 15 Si 0.650 3.350 16 C -0.052 4.052 17 C -0.111 4.111 18 C 0.065 3.935 19 H 0.101 0.899 20 O -0.370 6.370 21 C 0.027 3.973 22 C -0.142 4.142 23 H 0.104 0.896 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.407 0.593 27 H 0.173 0.827 28 H 0.128 0.872 29 H 0.377 0.623 30 H -0.234 1.234 31 H -0.238 1.238 32 H 0.157 0.843 33 H 0.097 0.903 34 H 0.111 0.889 35 H 0.089 0.911 36 H 0.043 0.957 37 H 0.046 0.954 38 H 0.118 0.882 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.841 -4.560 -4.372 7.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.267 6.267 3 C 0.319 3.681 4 O -0.374 6.374 5 C 0.069 3.931 6 N -0.360 5.360 7 C 0.368 3.632 8 O -0.395 6.395 9 C -0.172 4.172 10 C -0.342 4.342 11 S 0.468 5.532 12 C -0.358 4.358 13 C -0.145 4.145 14 O -0.329 6.329 15 Si 0.549 3.451 16 C -0.081 4.081 17 C -0.149 4.149 18 C 0.006 3.994 19 H 0.119 0.881 20 O -0.288 6.288 21 C -0.069 4.069 22 C -0.179 4.179 23 H 0.122 0.878 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.244 0.756 27 H 0.190 0.810 28 H 0.146 0.854 29 H 0.225 0.775 30 H -0.157 1.157 31 H -0.162 1.162 32 H 0.174 0.826 33 H 0.115 0.885 34 H 0.129 0.871 35 H 0.108 0.892 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.136 0.864 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.254 -5.359 -3.235 7.569 hybrid contribution -2.214 0.885 -0.748 2.499 sum 2.041 -4.474 -3.984 6.328 Atomic orbital electron populations 1.23360 0.75646 1.04088 1.02874 1.86491 1.23853 1.32730 1.83583 1.23122 0.90595 0.81888 0.72466 1.90694 1.66059 1.36336 1.44332 1.20981 0.85836 0.90926 0.95384 1.45575 1.53615 1.30306 1.06538 1.17687 0.78975 0.85198 0.81295 1.90862 1.41211 1.37256 1.70193 1.20131 1.06047 0.96916 0.94152 1.25819 1.03445 0.99504 1.05412 1.83170 1.53199 1.22130 0.94693 1.24740 1.09694 1.00926 1.00482 1.24414 0.89659 1.10830 0.89644 1.86653 1.25117 1.58087 1.63020 0.95263 0.88481 0.76699 0.84698 1.21046 0.97808 0.97070 0.92147 1.23490 1.03403 0.91712 0.96276 1.23582 0.91038 0.90031 0.94755 0.88077 1.87945 1.33439 1.59584 1.47816 1.22874 1.02158 0.93919 0.87986 1.23859 1.03181 0.98141 0.92767 0.87760 0.91570 0.91604 0.75613 0.81007 0.85409 0.77467 1.15712 1.16224 0.82588 0.88489 0.87112 0.89212 0.93798 0.93561 0.86362 0.89428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.02 10.56 101.05 1.07 1.08 16 2 O -0.35 -0.94 10.42 -39.25 -0.41 -1.35 16 3 C 0.48 1.73 6.44 36.01 0.23 1.96 16 4 O -0.49 -2.90 15.11 -18.75 -0.28 -3.18 16 5 C 0.16 0.18 1.11 -132.16 -0.15 0.03 16 6 N -0.71 0.06 5.09 -49.06 -0.25 -0.19 16 7 C 0.58 1.58 7.44 -12.62 -0.09 1.48 16 8 O -0.52 -3.46 15.84 5.25 0.08 -3.38 16 9 C -0.15 -0.14 5.98 -104.63 -0.63 -0.77 16 10 C -0.20 0.39 10.38 29.93 0.31 0.70 16 11 S 0.20 -0.43 20.20 -107.50 -2.17 -2.60 16 12 C -0.24 0.10 5.65 -36.18 -0.20 -0.11 16 13 C -0.03 0.03 2.94 36.00 0.11 0.13 16 14 O -0.52 -0.45 12.88 -35.23 -0.45 -0.90 16 15 Si 0.65 -1.13 30.92 -169.99 -5.26 -6.39 16 16 C -0.05 -0.07 9.95 -39.02 -0.39 -0.46 16 17 C -0.11 -0.23 6.15 -25.92 -0.16 -0.38 16 18 C 0.06 0.05 3.92 -25.92 -0.10 -0.05 16 19 H 0.10 0.10 7.35 -51.93 -0.38 -0.28 16 20 O -0.37 -0.56 10.72 -35.23 -0.38 -0.94 16 21 C 0.03 -0.02 10.85 101.05 1.10 1.08 16 22 C -0.14 0.18 7.21 -25.93 -0.19 -0.01 16 23 H 0.10 -0.21 8.14 -51.93 -0.42 -0.64 16 24 H 0.07 0.09 8.13 -51.93 -0.42 -0.33 16 25 H 0.07 -0.01 8.14 -51.92 -0.42 -0.43 16 26 H 0.41 -1.39 7.22 -40.82 -0.29 -1.68 16 27 H 0.17 -0.86 7.02 -52.48 -0.37 -1.23 16 28 H 0.13 -0.18 7.96 -51.93 -0.41 -0.60 16 29 H 0.38 -0.79 8.70 45.56 0.40 -0.40 16 30 H -0.23 -0.29 7.11 56.52 0.40 0.11 16 31 H -0.24 0.09 7.11 56.52 0.40 0.49 16 32 H 0.16 0.39 8.06 -52.48 -0.42 -0.04 16 33 H 0.10 0.40 7.64 -51.93 -0.40 0.00 16 34 H 0.11 0.19 8.14 -51.92 -0.42 -0.23 16 35 H 0.09 -0.16 8.14 -51.93 -0.42 -0.58 16 36 H 0.04 -0.08 8.14 -51.93 -0.42 -0.50 16 37 H 0.05 -0.05 8.14 -51.93 -0.42 -0.47 16 38 H 0.12 -0.33 8.14 -51.93 -0.42 -0.76 16 39 H 0.09 -0.19 8.10 -51.93 -0.42 -0.61 16 LS Contribution 351.15 15.07 5.29 5.29 Total: 0.00 -9.31 351.15 -7.80 -17.12 By element: Atomic # 1 Polarization: -3.29 SS G_CDS: -4.88 Total: -8.17 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: 0.90 Total: 4.69 kcal Atomic # 7 Polarization: 0.06 SS G_CDS: -0.25 Total: -0.19 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: -1.44 Total: -9.75 kcal Atomic # 14 Polarization: -1.13 SS G_CDS: -5.26 Total: -6.39 kcal Atomic # 16 Polarization: -0.43 SS G_CDS: -2.17 Total: -2.60 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -9.31 -7.80 -17.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14247462_6894386.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.310 kcal (2) G-P(sol) polarization free energy of solvation -9.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds