Wall clock time and date at job start Sun Mar 7 2021 00:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34228 * 117.00352 * 2 1 4 4 O 1.20824 * 120.00047 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00098 * 180.02562 * 3 2 1 6 6 N 1.46502 * 112.84938 * 324.05859 * 5 3 2 7 7 C 1.34778 * 120.00375 * 293.64511 * 6 5 3 8 8 O 1.21636 * 119.99654 * 354.98254 * 7 6 5 9 9 C 1.47190 * 119.99983 * 174.97702 * 7 6 5 10 10 C 1.36008 * 123.46525 * 0.24736 * 9 7 6 11 11 S 1.70442 * 110.81853 * 180.25132 * 10 9 7 12 12 C 1.75500 * 92.44474 * 359.72328 * 11 10 9 13 13 C 1.50698 * 124.71315 * 179.97438 * 12 11 10 14 14 O 1.42901 * 109.47526 * 244.99824 * 13 12 11 15 15 Si 1.86300 * 109.47113 * 5.00295 * 13 12 11 16 16 C 1.32769 * 110.57501 * 359.97438 * 12 11 10 17 17 C 1.53779 * 113.61304 * 192.86729 * 5 3 2 18 18 C 1.53781 * 87.07930 * 270.79810 * 17 5 3 19 19 H 1.08995 * 113.61233 * 89.11786 * 18 17 5 20 20 O 1.42899 * 113.61162 * 219.93638 * 18 17 5 21 21 C 1.42905 * 114.00045 * 209.99944 * 20 18 17 22 22 C 1.53775 * 87.08043 * 334.56717 * 18 17 5 23 23 H 1.09001 * 109.47663 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46886 * 300.00258 * 1 2 3 25 25 H 1.09011 * 109.47087 * 59.99603 * 1 2 3 26 26 H 0.96998 * 120.00033 * 113.64408 * 6 5 3 27 27 H 1.08009 * 124.58739 * 359.97438 * 10 9 7 28 28 H 1.09002 * 109.47169 * 125.00216 * 13 12 11 29 29 H 0.96701 * 113.99691 * 59.99897 * 14 13 12 30 30 H 1.48499 * 110.00203 * 180.02562 * 15 13 12 31 31 H 1.48504 * 109.99676 * 301.31596 * 15 13 12 32 32 H 1.08011 * 123.45591 * 180.02562 * 16 12 11 33 33 H 1.08996 * 113.61801 * 25.34635 * 17 5 3 34 34 H 1.09007 * 113.61725 * 156.24827 * 17 5 3 35 35 H 1.08996 * 109.47551 * 180.02562 * 21 20 18 36 36 H 1.08998 * 109.46892 * 300.00078 * 21 20 18 37 37 H 1.08999 * 109.46954 * 59.99731 * 21 20 18 38 38 H 1.09005 * 113.61925 * 270.87942 * 22 18 17 39 39 H 1.09002 * 113.61452 * 139.98004 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2747 -0.0006 6 7 4.1919 0.2128 0.7914 7 6 4.0242 0.1812 2.1283 8 8 3.4308 1.0834 2.6882 9 6 4.5589 -0.9450 2.9107 10 6 5.2367 -1.9869 2.3586 11 16 5.7016 -3.1089 3.5545 12 6 4.9764 -2.1557 4.8373 13 6 4.9813 -2.5348 6.2959 14 8 3.6415 -2.7769 6.7298 15 14 5.9992 -4.0771 6.5332 16 6 4.4228 -1.0543 4.3443 17 6 4.1098 2.6787 0.3133 18 6 4.0436 2.9563 -1.1978 19 1 3.0856 3.3593 -1.5261 20 8 5.1580 3.7017 -1.6922 21 6 4.8521 4.5264 -2.8185 22 6 4.1760 1.4380 -1.4028 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 4.7268 -0.4677 0.3536 27 1 5.4475 -2.0916 1.3045 28 1 5.4115 -1.7220 6.8811 29 1 3.1958 -3.4893 6.2513 30 1 6.0115 -4.4618 7.9674 31 1 5.4416 -5.1843 5.7156 32 1 3.9181 -0.3180 4.9525 33 1 3.4250 3.2909 0.9001 34 1 5.1240 2.6751 0.7126 35 1 5.7496 5.0585 -3.1337 36 1 4.4928 3.9037 -3.6377 37 1 4.0806 5.2455 -2.5433 38 1 5.2084 1.0952 -1.4728 39 1 3.5446 1.0485 -2.2015 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14247462_6894386.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:17:48 Heat of formation + Delta-G solvation = -120.945426 kcal Electronic energy + Delta-G solvation = -26189.593184 eV Core-core repulsion = 22192.573315 eV Total energy + Delta-G solvation = -3997.019869 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 328.090 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.66760 -40.88691 -40.03582 -38.85988 -37.86949 -37.34468 -37.09158 -34.51276 -31.74119 -29.40756 -27.94401 -27.15635 -26.97139 -26.58439 -25.17044 -23.27446 -22.09318 -20.88289 -20.58791 -19.56132 -18.77728 -18.21459 -18.18158 -17.64701 -17.62895 -17.36737 -16.94355 -16.41798 -16.16433 -15.93755 -15.89486 -15.47216 -15.14933 -14.94632 -14.53057 -14.42863 -14.05571 -13.77915 -13.72771 -13.64809 -13.56755 -13.34056 -13.09477 -12.71588 -12.55144 -12.42745 -12.38395 -12.08953 -12.00297 -11.86431 -11.80239 -11.09753 -10.74528 -10.62694 -10.52285 -10.00943 -9.46638 -5.02343 -0.35137 0.39674 0.69284 0.73129 0.79754 1.22807 1.40481 1.56303 1.77486 1.92695 2.19065 2.76142 3.00367 3.13989 3.30693 3.40133 3.49334 3.60749 3.84174 3.95656 4.00315 4.13074 4.16737 4.27933 4.39104 4.45413 4.50470 4.52416 4.53127 4.55687 4.64536 4.70186 4.73180 4.76969 4.86582 4.98816 5.07441 5.13486 5.16888 6.12344 6.28570 6.41230 6.42858 6.99820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.353 6.353 3 C 0.474 3.526 4 O -0.522 6.522 5 C 0.155 3.845 6 N -0.687 5.687 7 C 0.580 3.420 8 O -0.573 6.573 9 C -0.183 4.183 10 C -0.184 4.184 11 S 0.259 5.741 12 C -0.247 4.247 13 C -0.049 4.049 14 O -0.546 6.546 15 Si 0.731 3.269 16 C -0.075 4.075 17 C -0.117 4.117 18 C 0.065 3.935 19 H 0.093 0.907 20 O -0.385 6.385 21 C 0.021 3.979 22 C -0.119 4.119 23 H 0.134 0.866 24 H 0.050 0.950 25 H 0.071 0.929 26 H 0.426 0.574 27 H 0.209 0.791 28 H 0.128 0.872 29 H 0.388 0.612 30 H -0.279 1.279 31 H -0.247 1.247 32 H 0.130 0.870 33 H 0.064 0.936 34 H 0.112 0.888 35 H 0.100 0.900 36 H 0.057 0.943 37 H 0.043 0.957 38 H 0.143 0.857 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.432 -6.876 -6.359 10.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.268 6.268 3 C 0.316 3.684 4 O -0.410 6.410 5 C 0.066 3.934 6 N -0.343 5.343 7 C 0.368 3.632 8 O -0.453 6.453 9 C -0.201 4.201 10 C -0.323 4.323 11 S 0.526 5.474 12 C -0.363 4.363 13 C -0.159 4.159 14 O -0.354 6.354 15 Si 0.632 3.368 16 C -0.104 4.104 17 C -0.155 4.155 18 C 0.006 3.994 19 H 0.111 0.889 20 O -0.304 6.304 21 C -0.075 4.075 22 C -0.157 4.157 23 H 0.152 0.848 24 H 0.069 0.931 25 H 0.090 0.910 26 H 0.266 0.734 27 H 0.226 0.774 28 H 0.145 0.855 29 H 0.238 0.762 30 H -0.204 1.204 31 H -0.172 1.172 32 H 0.147 0.853 33 H 0.083 0.917 34 H 0.130 0.870 35 H 0.118 0.882 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.161 0.839 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 5.861 -7.699 -5.270 11.019 hybrid contribution -2.731 1.574 -0.067 3.153 sum 3.130 -6.126 -5.337 8.707 Atomic orbital electron populations 1.23583 0.74666 1.05890 1.02450 1.86483 1.24936 1.32203 1.83203 1.23647 0.91599 0.81677 0.71461 1.90673 1.66994 1.37365 1.45949 1.20961 0.84661 0.90656 0.97150 1.45395 1.52985 1.30275 1.05647 1.18039 0.78170 0.85003 0.81999 1.90837 1.43789 1.39309 1.71326 1.19933 1.08611 0.97770 0.93742 1.26240 1.00752 0.97903 1.07374 1.83002 1.51280 1.20299 0.92859 1.24811 1.09445 1.00825 1.01261 1.24753 0.89334 1.12141 0.89674 1.86618 1.26190 1.58934 1.63665 0.94396 0.86784 0.74318 0.81339 1.20959 0.99076 0.97570 0.92784 1.23470 1.02640 0.92309 0.97097 1.23527 0.90662 0.91628 0.93599 0.88871 1.87911 1.33704 1.60043 1.48694 1.23026 1.02736 0.94013 0.87721 1.23836 1.04596 0.96011 0.91256 0.84833 0.93079 0.91016 0.73364 0.77403 0.85470 0.76239 1.20440 1.17196 0.85261 0.91681 0.86994 0.88188 0.92459 0.93812 0.83914 0.87678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.04 10.56 113.37 1.20 1.24 16 2 O -0.35 -2.03 10.42 -51.40 -0.54 -2.57 16 3 C 0.47 4.05 6.44 71.24 0.46 4.51 16 4 O -0.52 -7.49 15.11 21.97 0.33 -7.16 16 5 C 0.15 0.43 1.11 3.38 0.00 0.43 16 6 N -0.69 0.33 5.09 -427.37 -2.18 -1.85 16 7 C 0.58 3.85 7.44 86.59 0.64 4.50 16 8 O -0.57 -9.50 15.84 -4.14 -0.07 -9.56 16 9 C -0.18 -0.39 5.98 -19.87 -0.12 -0.50 16 10 C -0.18 1.10 10.38 67.30 0.70 1.80 16 11 S 0.26 -1.68 20.20 -56.49 -1.14 -2.82 16 12 C -0.25 0.15 5.65 24.51 0.14 0.29 16 13 C -0.05 0.04 2.94 71.24 0.21 0.25 16 14 O -0.55 -1.60 12.88 -148.98 -1.92 -3.52 16 15 Si 0.73 -2.94 30.92 68.60 2.12 -0.82 16 16 C -0.07 -0.34 9.95 22.67 0.23 -0.11 16 17 C -0.12 -0.69 6.15 31.12 0.19 -0.50 16 18 C 0.06 0.14 3.92 31.12 0.12 0.26 16 19 H 0.09 0.32 7.35 -2.39 -0.02 0.30 16 20 O -0.39 -1.17 10.72 -148.98 -1.60 -2.77 16 21 C 0.02 -0.03 10.85 113.37 1.23 1.19 16 22 C -0.12 0.45 7.21 31.12 0.22 0.68 16 23 H 0.13 -0.64 8.14 -2.39 -0.02 -0.66 16 24 H 0.05 0.24 8.13 -2.38 -0.02 0.22 16 25 H 0.07 0.03 8.14 -2.38 -0.02 0.01 16 26 H 0.43 -3.83 7.22 -92.71 -0.67 -4.50 16 27 H 0.21 -2.93 7.02 -2.91 -0.02 -2.95 16 28 H 0.13 -0.19 7.96 -2.39 -0.02 -0.21 16 29 H 0.39 -1.34 8.70 -74.06 -0.64 -1.98 16 30 H -0.28 -0.93 7.11 99.48 0.71 -0.23 16 31 H -0.25 0.62 7.11 99.48 0.71 1.32 16 32 H 0.13 1.17 8.06 -2.91 -0.02 1.15 16 33 H 0.06 0.79 7.64 -2.39 -0.02 0.77 16 34 H 0.11 0.57 8.14 -2.38 -0.02 0.55 16 35 H 0.10 -0.40 8.14 -2.39 -0.02 -0.42 16 36 H 0.06 -0.25 8.14 -2.39 -0.02 -0.27 16 37 H 0.04 -0.06 8.14 -2.39 -0.02 -0.08 16 38 H 0.14 -1.21 8.14 -2.38 -0.02 -1.23 16 39 H 0.10 -0.70 8.10 -2.39 -0.02 -0.72 16 Total: 0.00 -26.04 351.15 0.07 -25.97 By element: Atomic # 1 Polarization: -8.76 SS G_CDS: -0.17 Total: -8.94 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: 5.23 Total: 14.04 kcal Atomic # 7 Polarization: 0.33 SS G_CDS: -2.18 Total: -1.85 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -3.78 Total: -25.59 kcal Atomic # 14 Polarization: -2.94 SS G_CDS: 2.12 Total: -0.82 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -1.14 Total: -2.82 kcal Total: -26.04 0.07 -25.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14247462_6894386.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.971 kcal (2) G-P(sol) polarization free energy of solvation -26.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds