Wall clock time and date at job start Sun Mar 7 2021 00:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34224 * 117.00025 * 2 1 4 4 O 1.20828 * 120.00090 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99663 * 179.97438 * 3 2 1 6 6 N 1.46497 * 112.85117 * 323.04967 * 5 3 2 7 7 C 1.34771 * 120.00011 * 284.73581 * 6 5 3 8 8 O 1.21547 * 120.00195 * 4.82074 * 7 6 5 9 9 C 1.47847 * 120.00025 * 184.82536 * 7 6 5 10 10 C 1.39565 * 120.14490 * 353.36492 * 9 7 6 11 11 C 1.37977 * 119.85214 * 179.76441 * 10 9 7 12 12 C 1.50699 * 119.92603 * 180.25163 * 11 10 9 13 13 O 1.42898 * 109.47389 * 255.23784 * 12 11 10 14 14 Si 1.86300 * 109.47063 * 15.24142 * 12 11 10 15 15 C 1.38339 * 120.14659 * 0.49838 * 11 10 9 16 16 C 1.50700 * 119.85390 * 179.76244 * 15 11 10 17 17 C 1.38380 * 120.29059 * 359.77366 * 15 11 10 18 18 C 1.37936 * 120.14660 * 359.96448 * 17 15 11 19 19 C 1.50702 * 120.07311 * 180.02562 * 18 17 15 20 20 C 1.53781 * 113.61576 * 191.85200 * 5 3 2 21 21 C 1.53784 * 87.08398 * 270.80276 * 20 5 3 22 22 H 1.08997 * 113.61300 * 89.19642 * 21 20 5 23 23 O 1.42900 * 113.61088 * 220.01993 * 21 20 5 24 24 C 1.42908 * 113.99375 * 209.99814 * 23 21 20 25 25 C 1.53781 * 87.07754 * 334.56654 * 21 20 5 26 26 H 1.08997 * 109.47260 * 300.00854 * 1 2 3 27 27 H 1.09000 * 109.46566 * 60.00173 * 1 2 3 28 28 H 1.08993 * 109.47369 * 180.02562 * 1 2 3 29 29 H 0.97009 * 120.00096 * 104.46409 * 6 5 3 30 30 H 1.07996 * 120.06836 * 0.02562 * 10 9 7 31 31 H 1.09003 * 109.46875 * 135.23760 * 12 11 10 32 32 H 0.96705 * 113.99619 * 60.00017 * 13 12 11 33 33 H 1.48500 * 109.99841 * 179.97438 * 14 12 11 34 34 H 1.48499 * 109.99895 * 301.31517 * 14 12 11 35 35 H 1.09000 * 109.46552 * 270.01248 * 16 15 11 36 36 H 1.08996 * 109.47035 * 30.01974 * 16 15 11 37 37 H 1.09000 * 109.46614 * 150.01730 * 16 15 11 38 38 H 1.08002 * 119.92632 * 179.97438 * 17 15 11 39 39 H 1.08999 * 109.46985 * 263.22512 * 19 18 17 40 40 H 1.08994 * 109.47515 * 23.22561 * 19 18 17 41 41 H 1.09005 * 109.47063 * 143.22615 * 19 18 17 42 42 H 1.09000 * 113.61094 * 25.35096 * 20 5 3 43 43 H 1.08998 * 113.61636 * 156.25253 * 20 5 3 44 44 H 1.08994 * 109.46971 * 299.99779 * 24 23 21 45 45 H 1.08997 * 109.47288 * 60.00332 * 24 23 21 46 46 H 1.09001 * 109.47023 * 180.02562 * 24 23 21 47 47 H 1.09004 * 113.61550 * 270.88138 * 25 21 20 48 48 H 1.09002 * 113.61312 * 139.98652 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2747 0.0006 6 7 4.1905 0.2272 0.8126 7 6 4.1734 0.3169 2.1572 8 8 3.5653 1.2195 2.6984 9 6 4.8944 -0.6826 2.9739 10 6 5.4768 -1.7958 2.3663 11 6 6.1524 -2.7223 3.1337 12 6 6.7868 -3.9221 2.4785 13 8 5.9936 -5.0819 2.7388 14 14 6.8927 -3.6419 0.6398 15 6 6.2444 -2.5550 4.5038 16 6 6.9793 -3.5737 5.3363 17 6 5.6644 -1.4563 5.1133 18 6 4.9907 -0.5199 4.3570 19 6 4.3601 0.6762 5.0224 20 6 4.1093 2.6841 0.2899 21 6 4.0457 2.9344 -1.2261 22 1 3.0887 3.3328 -1.5630 23 8 5.1619 3.6692 -1.7322 24 6 4.8587 4.4738 -2.8737 25 6 4.1784 1.4127 -1.4034 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 4.6128 -0.5329 0.3825 30 1 5.4024 -1.9296 1.2972 31 1 7.7886 -4.0690 2.8820 32 1 5.0874 -5.0213 2.4067 33 1 7.5172 -4.8178 -0.0180 34 1 5.5362 -3.4086 0.0825 35 1 6.2839 -4.3482 5.6600 36 1 7.7738 -4.0241 4.7414 37 1 7.4116 -3.0855 6.2097 38 1 5.7394 -1.3317 6.1835 39 1 3.3025 0.4792 5.1972 40 1 4.8564 0.8663 5.9741 41 1 4.4655 1.5485 4.3772 42 1 3.4235 3.3067 0.8644 43 1 5.1229 2.6877 0.6909 44 1 4.4997 3.8369 -3.6820 45 1 4.0880 5.1990 -2.6127 46 1 5.7575 4.9989 -3.1972 47 1 5.2108 1.0686 -1.4655 48 1 3.5484 1.0089 -2.1961 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14247462_9599494.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:17:56 Heat of formation + Delta-G solvation = -126.010126 kcal Electronic energy + Delta-G solvation = -32595.706854 eV Core-core repulsion = 28198.239879 eV Total energy + Delta-G solvation = -4397.466975 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 350.165 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.69279 -41.49363 -40.37479 -39.66032 -37.88428 -37.72826 -37.19184 -34.85511 -34.41644 -33.04281 -29.67859 -29.17699 -28.56196 -27.78981 -27.12594 -26.10369 -25.50913 -23.81778 -23.34675 -22.36205 -21.09017 -20.77604 -19.38685 -19.08361 -18.20492 -17.74293 -17.56176 -17.34007 -17.24067 -16.79806 -16.36855 -16.33311 -16.27731 -15.98044 -15.64724 -15.36939 -15.14986 -14.84499 -14.62024 -14.53070 -14.41538 -13.99307 -13.94169 -13.74288 -13.61788 -13.47290 -13.31730 -13.09209 -13.07886 -12.88680 -12.71249 -12.55042 -12.48387 -12.33961 -12.02637 -11.99690 -11.90520 -11.85081 -11.72922 -10.79187 -10.60685 -10.55040 -10.47776 -9.90687 -9.64764 -4.90918 -0.28043 0.17227 0.77533 1.31150 1.36567 1.57300 1.71395 1.75361 1.98702 2.61157 2.77318 3.01538 3.15620 3.39941 3.41564 3.44953 3.54235 3.64957 3.69008 3.81240 3.95793 4.13721 4.15027 4.17697 4.20711 4.41342 4.46460 4.49912 4.52502 4.54598 4.55828 4.57189 4.61572 4.66841 4.68206 4.72381 4.78668 4.79655 4.82021 4.88690 4.90827 5.01473 5.07587 5.14651 5.19434 5.30202 5.47953 5.51097 5.80439 6.14782 6.25626 6.44622 6.50910 6.98706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.355 6.355 3 C 0.474 3.526 4 O -0.521 6.521 5 C 0.153 3.847 6 N -0.694 5.694 7 C 0.562 3.438 8 O -0.550 6.550 9 C -0.156 4.156 10 C -0.070 4.070 11 C -0.132 4.132 12 C -0.081 4.081 13 O -0.543 6.543 14 Si 0.753 3.247 15 C -0.026 4.026 16 C -0.120 4.120 17 C -0.136 4.136 18 C -0.022 4.022 19 C -0.119 4.119 20 C -0.110 4.110 21 C 0.065 3.935 22 H 0.094 0.906 23 O -0.384 6.384 24 C 0.021 3.979 25 C -0.125 4.125 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.131 0.869 29 H 0.420 0.580 30 H 0.147 0.853 31 H 0.128 0.872 32 H 0.385 0.615 33 H -0.301 1.301 34 H -0.263 1.263 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.145 0.855 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.112 0.888 44 H 0.056 0.944 45 H 0.044 0.956 46 H 0.099 0.901 47 H 0.143 0.857 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.446 -2.903 -3.390 5.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.270 6.270 3 C 0.316 3.684 4 O -0.408 6.408 5 C 0.064 3.936 6 N -0.350 5.350 7 C 0.352 3.648 8 O -0.429 6.429 9 C -0.159 4.159 10 C -0.088 4.088 11 C -0.133 4.133 12 C -0.189 4.189 13 O -0.351 6.351 14 Si 0.657 3.343 15 C -0.027 4.027 16 C -0.177 4.177 17 C -0.154 4.154 18 C -0.023 4.023 19 C -0.175 4.175 20 C -0.149 4.149 21 C 0.006 3.994 22 H 0.112 0.888 23 O -0.302 6.302 24 C -0.075 4.075 25 C -0.163 4.163 26 H 0.072 0.928 27 H 0.089 0.911 28 H 0.150 0.850 29 H 0.260 0.740 30 H 0.164 0.836 31 H 0.146 0.854 32 H 0.234 0.766 33 H -0.229 1.229 34 H -0.189 1.189 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.163 0.837 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.088 0.912 43 H 0.131 0.869 44 H 0.074 0.926 45 H 0.062 0.938 46 H 0.118 0.882 47 H 0.160 0.840 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.268 -2.445 -3.452 5.345 hybrid contribution -1.735 -0.663 0.327 1.886 sum 1.533 -3.108 -3.124 4.666 Atomic orbital electron populations 1.23575 0.74677 1.05802 1.02538 1.86491 1.24945 1.32372 1.83239 1.23703 0.91614 0.81613 0.71473 1.90675 1.66983 1.37285 1.45886 1.21012 0.84580 0.91180 0.96817 1.45569 1.58460 1.25799 1.05174 1.18570 0.79631 0.84579 0.82065 1.90782 1.43802 1.36373 1.71913 1.19498 1.05265 0.97322 0.93782 1.21315 0.94878 0.92434 1.00190 1.20083 1.01616 0.97689 0.93899 1.25194 0.97564 0.83888 1.12280 1.86596 1.28322 1.38505 1.81628 0.94280 0.82432 0.85599 0.71968 1.20226 0.94245 0.94604 0.93586 1.20949 1.00070 0.97141 0.99499 1.21183 0.99264 0.93994 1.00929 1.20177 0.94095 0.95924 0.92085 1.21021 1.00022 0.95873 1.00599 1.23401 1.02700 0.91813 0.96939 1.23525 0.90634 0.91549 0.93685 0.88839 1.87917 1.33639 1.61377 1.47315 1.23020 1.02749 0.94342 0.87370 1.23886 1.04645 0.96397 0.91333 0.92797 0.91113 0.85039 0.73992 0.83578 0.85418 0.76558 1.22907 1.18859 0.90540 0.90243 0.90230 0.83695 0.91631 0.90642 0.90289 0.91183 0.86949 0.92573 0.93768 0.88214 0.83951 0.87871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.02 10.56 113.37 1.20 1.22 16 2 O -0.35 -1.84 10.43 -51.36 -0.54 -2.38 16 3 C 0.47 3.59 6.75 71.24 0.48 4.07 16 4 O -0.52 -6.79 15.14 21.96 0.33 -6.46 16 5 C 0.15 0.35 1.12 3.38 0.00 0.35 16 6 N -0.69 0.01 5.06 -426.78 -2.16 -2.15 16 7 C 0.56 2.99 7.36 86.79 0.64 3.63 16 8 O -0.55 -6.72 12.37 -3.86 -0.05 -6.77 16 9 C -0.16 -0.40 5.87 -20.09 -0.12 -0.52 16 10 C -0.07 0.16 8.14 22.53 0.18 0.35 16 11 C -0.13 0.30 5.25 -19.90 -0.10 0.20 16 12 C -0.08 0.32 2.04 71.24 0.15 0.47 16 13 O -0.54 0.56 12.80 -148.98 -1.91 -1.35 16 14 Si 0.75 -4.41 30.25 68.60 2.08 -2.34 16 15 C -0.03 0.02 5.89 -19.81 -0.12 -0.09 16 16 C -0.12 0.41 9.53 71.24 0.68 1.09 16 17 C -0.14 -0.06 9.31 22.23 0.21 0.15 16 18 C -0.02 -0.08 5.91 -19.61 -0.12 -0.19 16 19 C -0.12 -0.57 8.72 71.24 0.62 0.06 16 20 C -0.11 -0.52 5.81 31.12 0.18 -0.34 16 21 C 0.06 0.10 3.92 31.12 0.12 0.22 16 22 H 0.09 0.25 7.39 -2.39 -0.02 0.23 16 23 O -0.38 -0.95 10.71 -148.98 -1.60 -2.55 16 24 C 0.02 -0.04 10.85 113.37 1.23 1.19 16 25 C -0.13 0.46 7.25 31.12 0.23 0.68 16 26 H 0.05 0.18 8.13 -2.39 -0.02 0.16 16 27 H 0.07 -0.01 8.13 -2.39 -0.02 -0.03 16 28 H 0.13 -0.68 8.14 -2.39 -0.02 -0.70 16 29 H 0.42 -2.66 6.82 -92.70 -0.63 -3.30 16 30 H 0.15 -1.04 3.23 -2.91 -0.01 -1.04 16 31 H 0.13 -0.72 6.48 -2.39 -0.02 -0.73 16 32 H 0.39 -2.36 8.70 -74.05 -0.64 -3.00 16 33 H -0.30 -0.73 7.11 99.48 0.71 -0.03 16 34 H -0.26 1.27 6.67 99.48 0.66 1.93 16 35 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16 36 H 0.08 -0.34 6.22 -2.39 -0.01 -0.36 16 37 H 0.08 -0.42 8.08 -2.39 -0.02 -0.44 16 38 H 0.15 -0.39 8.06 -2.91 -0.02 -0.42 16 39 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 40 H 0.07 0.08 8.04 -2.39 -0.02 0.06 16 41 H 0.08 0.68 5.88 -2.38 -0.01 0.67 16 42 H 0.07 0.71 7.62 -2.39 -0.02 0.70 16 43 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 44 H 0.06 -0.26 8.14 -2.39 -0.02 -0.28 16 45 H 0.04 -0.08 8.14 -2.39 -0.02 -0.10 16 46 H 0.10 -0.43 8.14 -2.39 -0.02 -0.45 16 47 H 0.14 -1.14 8.14 -2.39 -0.02 -1.16 16 48 H 0.10 -0.65 8.10 -2.39 -0.02 -0.67 16 Total: 0.00 -21.14 390.84 1.35 -19.79 By element: Atomic # 1 Polarization: -8.05 SS G_CDS: -0.27 Total: -8.32 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: 5.46 Total: 12.53 kcal Atomic # 7 Polarization: 0.01 SS G_CDS: -2.16 Total: -2.15 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -3.75 Total: -19.51 kcal Atomic # 14 Polarization: -4.41 SS G_CDS: 2.08 Total: -2.34 kcal Total: -21.14 1.35 -19.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14247462_9599494.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.225 kcal (2) G-P(sol) polarization free energy of solvation -21.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds