Wall clock time and date at job start Sun Mar 7 2021 00:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34228 * 116.99708 * 2 1 4 4 O 1.20825 * 120.00171 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99825 * 179.97438 * 3 2 1 6 6 N 1.46498 * 112.85097 * 35.49655 * 5 3 2 7 7 C 1.34772 * 119.99786 * 65.88225 * 6 5 3 8 8 O 1.21632 * 120.00191 * 4.71705 * 7 6 5 9 9 C 1.47264 * 120.00061 * 184.72385 * 7 6 5 10 10 C 1.36771 * 126.94165 * 179.97438 * 9 7 6 11 11 C 1.50694 * 125.80283 * 359.97438 * 10 9 7 12 12 N 1.34657 * 108.39421 * 179.97438 * 10 9 7 13 13 C 1.36445 * 110.29994 * 0.02562 * 12 10 9 14 14 C 1.50704 * 125.57016 * 179.97438 * 13 12 10 15 15 O 1.42905 * 109.46694 * 245.02348 * 14 13 12 16 16 Si 1.86301 * 109.47249 * 5.02447 * 14 13 12 17 17 C 1.34480 * 108.85747 * 359.74873 * 13 12 10 18 18 C 1.53787 * 113.68932 * 264.23091 * 5 3 2 19 19 C 1.53788 * 87.07882 * 220.00881 * 18 5 3 20 20 H 1.09002 * 113.60787 * 139.98199 * 19 18 5 21 21 O 1.42894 * 113.61166 * 270.88285 * 19 18 5 22 22 C 1.42908 * 113.99928 * 247.50001 * 21 19 18 23 23 C 1.53780 * 87.08244 * 25.43171 * 19 18 5 24 24 H 1.09001 * 109.47010 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47371 * 300.00478 * 1 2 3 26 26 H 1.08997 * 109.46988 * 60.00691 * 1 2 3 27 27 H 0.96994 * 120.00179 * 245.60704 * 6 5 3 28 28 H 1.09000 * 109.47707 * 89.99927 * 11 10 9 29 29 H 1.09005 * 109.47254 * 210.00163 * 11 10 9 30 30 H 1.08996 * 109.47372 * 329.99633 * 11 10 9 31 31 H 0.97009 * 124.84861 * 179.97438 * 12 10 9 32 32 H 1.08997 * 109.47088 * 125.02744 * 14 13 12 33 33 H 0.96692 * 114.00206 * 60.00423 * 15 14 13 34 34 H 1.48496 * 109.99786 * 58.68131 * 16 14 13 35 35 H 1.48502 * 109.99516 * 180.02562 * 16 14 13 36 36 H 1.08001 * 126.83785 * 180.25324 * 17 13 12 37 37 H 1.09001 * 113.60982 * 334.55647 * 18 5 3 38 38 H 1.08999 * 113.61466 * 105.45703 * 18 5 3 39 39 H 1.09000 * 109.46929 * 60.00124 * 22 21 19 40 40 H 1.08999 * 109.46814 * 180.02562 * 22 21 19 41 41 H 1.08995 * 109.46946 * 299.99934 * 22 21 19 42 42 H 1.08992 * 113.61190 * 220.01747 * 23 19 18 43 43 H 1.09003 * 113.61186 * 89.11674 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 4.1923 0.2069 -0.7828 7 6 4.0172 0.1597 -2.1183 8 8 3.4119 1.0500 -2.6842 9 6 4.5586 -0.9701 -2.8924 10 6 4.4644 -1.1610 -4.2434 11 6 3.7777 -0.2396 -5.2182 12 7 5.0896 -2.3124 -4.5544 13 6 5.5994 -2.8930 -3.4299 14 6 6.3639 -4.1909 -3.3829 15 8 5.6145 -5.1586 -2.6452 16 14 6.6417 -4.8112 -5.1175 17 6 5.3125 -2.1153 -2.3709 18 6 4.1754 1.4489 1.4019 19 6 5.1714 2.4300 0.7612 20 1 5.3786 3.3056 1.3764 21 8 6.3572 1.8022 0.2697 22 6 7.5413 2.1525 0.9891 23 6 4.1098 2.6765 -0.3237 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 4.7360 -0.4638 -0.3410 28 1 4.4918 0.4966 -5.5872 29 1 3.3891 -0.8201 -6.0550 30 1 2.9552 0.2713 -4.7176 31 1 5.1659 -2.6773 -5.4500 32 1 7.3257 -4.0286 -2.8966 33 1 4.7452 -5.3530 -3.0214 34 1 7.3924 -3.8000 -5.9042 35 1 7.3941 -6.0910 -5.0847 36 1 5.5818 -2.2984 -1.3412 37 1 3.4991 1.9178 2.1167 38 1 4.6424 0.5439 1.7905 39 1 7.4318 1.8600 2.0334 40 1 8.3968 1.6355 0.5544 41 1 7.6984 3.2293 0.9279 42 1 4.5240 2.7625 -1.3282 43 1 3.4157 3.4810 -0.0806 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14247462_9865296.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:18:04 Heat of formation + Delta-G solvation = -111.460726 kcal Electronic energy + Delta-G solvation = -29190.474506 eV Core-core repulsion = 25011.976288 eV Total energy + Delta-G solvation = -4178.498218 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 325.145 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.63471 -42.21933 -40.55486 -39.48618 -37.73936 -37.68777 -36.94838 -34.22958 -32.79919 -31.98272 -29.40482 -28.88897 -27.75020 -27.06507 -26.60078 -25.42747 -23.63285 -22.61257 -21.59240 -20.73456 -20.41959 -19.13646 -18.64171 -18.21725 -17.81652 -17.47926 -17.24240 -16.98979 -16.70503 -16.47283 -16.02648 -15.79953 -15.69608 -15.26468 -15.04905 -14.69203 -14.59977 -14.45205 -14.33594 -14.08979 -13.90379 -13.65956 -13.41016 -13.35782 -13.33317 -12.99204 -12.67693 -12.54095 -12.53108 -12.23179 -12.12276 -12.04598 -11.88747 -11.57296 -10.96346 -10.60356 -10.45961 -10.23614 -9.84311 -9.16132 -5.13950 0.66332 0.92996 1.16332 1.25581 1.52445 1.64602 1.83309 1.95680 2.26152 2.49930 2.62961 3.21479 3.26834 3.45607 3.52405 3.66304 3.74912 3.87726 4.08038 4.19871 4.22791 4.23579 4.25281 4.45889 4.47205 4.50950 4.53477 4.59289 4.59705 4.62403 4.69837 4.70306 4.77930 4.79109 4.88731 4.92325 5.03170 5.21871 5.24956 5.38564 5.68776 5.85407 6.23605 6.42585 6.53678 6.60453 6.73786 7.26943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.358 6.358 3 C 0.468 3.532 4 O -0.529 6.529 5 C 0.156 3.844 6 N -0.678 5.678 7 C 0.594 3.406 8 O -0.580 6.580 9 C -0.262 4.262 10 C 0.120 3.880 11 C -0.096 4.096 12 N -0.532 5.532 13 C -0.022 4.022 14 C -0.037 4.037 15 O -0.548 6.548 16 Si 0.765 3.235 17 C -0.134 4.134 18 C -0.131 4.131 19 C 0.075 3.925 20 H 0.111 0.889 21 O -0.380 6.380 22 C 0.024 3.976 23 C -0.128 4.128 24 H 0.130 0.870 25 H 0.068 0.932 26 H 0.051 0.949 27 H 0.418 0.582 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.427 0.573 32 H 0.124 0.876 33 H 0.396 0.604 34 H -0.279 1.279 35 H -0.289 1.289 36 H 0.156 0.844 37 H 0.124 0.876 38 H 0.113 0.887 39 H 0.059 0.941 40 H 0.091 0.909 41 H 0.048 0.952 42 H 0.071 0.929 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.948 -4.504 0.620 4.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.273 6.273 3 C 0.311 3.689 4 O -0.417 6.417 5 C 0.067 3.933 6 N -0.331 5.331 7 C 0.385 3.615 8 O -0.461 6.461 9 C -0.271 4.271 10 C 0.001 3.999 11 C -0.153 4.153 12 N -0.133 5.133 13 C -0.131 4.131 14 C -0.148 4.148 15 O -0.355 6.355 16 Si 0.669 3.331 17 C -0.159 4.159 18 C -0.168 4.168 19 C 0.017 3.983 20 H 0.128 0.872 21 O -0.299 6.299 22 C -0.072 4.072 23 C -0.166 4.166 24 H 0.148 0.852 25 H 0.087 0.913 26 H 0.070 0.930 27 H 0.257 0.743 28 H 0.099 0.901 29 H 0.114 0.886 30 H 0.097 0.903 31 H 0.269 0.731 32 H 0.141 0.859 33 H 0.246 0.754 34 H -0.205 1.205 35 H -0.216 1.216 36 H 0.173 0.827 37 H 0.143 0.857 38 H 0.132 0.868 39 H 0.077 0.923 40 H 0.110 0.890 41 H 0.067 0.933 42 H 0.090 0.910 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 2.424 -4.062 -0.261 4.738 hybrid contribution 0.165 0.238 0.411 0.503 sum 2.589 -3.824 0.150 4.621 Atomic orbital electron populations 1.23524 0.75166 1.05601 1.02291 1.86537 1.24680 1.32883 1.83212 1.24310 0.92299 0.81379 0.70931 1.90638 1.67146 1.37352 1.46592 1.21211 0.83311 0.91404 0.97409 1.45053 1.52410 1.29475 1.06209 1.17651 0.77731 0.84526 0.81546 1.90751 1.44477 1.40181 1.70703 1.20049 1.14016 0.99653 0.93429 1.20493 0.96500 0.88502 0.94455 1.20600 1.00484 0.97292 0.96971 1.41641 1.43432 1.18195 1.09993 1.20677 1.06687 0.99443 0.86288 1.24598 0.95849 0.84941 1.09426 1.86517 1.34852 1.58684 1.55485 0.94347 0.87508 0.77439 0.73820 1.21941 1.01652 0.93177 0.99087 1.23834 0.98129 1.02947 0.91903 1.22959 0.84949 0.95809 0.94579 0.87166 1.87925 1.15494 1.69218 1.57253 1.23004 0.86580 1.00574 0.96996 1.23557 0.97528 0.94382 1.01181 0.85195 0.91332 0.92976 0.74344 0.90082 0.88631 0.90315 0.73103 0.85910 0.75409 1.20516 1.21614 0.82687 0.85743 0.86818 0.92274 0.89020 0.93338 0.91046 0.86969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.10 10.56 113.37 1.20 1.30 16 2 O -0.36 -3.15 10.41 -51.40 -0.54 -3.68 16 3 C 0.47 5.11 6.58 71.24 0.47 5.58 16 4 O -0.53 -8.44 15.66 21.97 0.34 -8.09 16 5 C 0.16 0.90 1.00 3.39 0.00 0.91 16 6 N -0.68 -3.62 4.53 -427.28 -1.93 -5.56 16 7 C 0.59 6.14 7.36 86.62 0.64 6.78 16 8 O -0.58 -9.74 13.36 -4.13 -0.06 -9.79 16 9 C -0.26 -1.65 6.29 -19.04 -0.12 -1.77 16 10 C 0.12 0.35 7.17 41.78 0.30 0.65 16 11 C -0.10 -0.13 9.88 71.23 0.70 0.58 16 12 N -0.53 1.42 5.41 -171.08 -0.93 0.50 16 13 C -0.02 0.03 6.09 40.98 0.25 0.28 16 14 C -0.04 0.14 2.98 71.24 0.21 0.35 16 15 O -0.55 1.56 12.88 -148.98 -1.92 -0.35 16 16 Si 0.76 -4.61 30.96 68.60 2.12 -2.49 16 17 C -0.13 -0.27 10.45 23.62 0.25 -0.03 16 18 C -0.13 0.24 7.19 31.12 0.22 0.46 16 19 C 0.08 -0.02 4.37 31.12 0.14 0.12 16 20 H 0.11 -0.50 7.87 -2.39 -0.02 -0.52 16 21 O -0.38 -0.65 10.13 -148.98 -1.51 -2.16 16 22 C 0.02 -0.09 10.85 113.37 1.23 1.14 16 23 C -0.13 -0.82 6.63 31.12 0.21 -0.62 16 24 H 0.13 -0.35 8.14 -2.39 -0.02 -0.37 16 25 H 0.07 0.17 8.13 -2.39 -0.02 0.15 16 26 H 0.05 0.31 8.13 -2.39 -0.02 0.29 16 27 H 0.42 0.37 7.80 -92.71 -0.72 -0.35 16 28 H 0.08 0.09 8.14 -2.39 -0.02 0.07 16 29 H 0.10 -0.47 8.14 -2.38 -0.02 -0.49 16 30 H 0.08 0.56 6.47 -2.39 -0.02 0.54 16 31 H 0.43 -3.74 6.72 -92.70 -0.62 -4.36 16 32 H 0.12 -0.40 7.96 -2.39 -0.02 -0.41 16 33 H 0.40 -4.09 8.70 -74.06 -0.64 -4.73 16 34 H -0.28 0.38 7.11 99.48 0.71 1.09 16 35 H -0.29 -0.51 7.11 99.48 0.71 0.20 16 36 H 0.16 -0.11 7.70 -2.91 -0.02 -0.13 16 37 H 0.12 -0.52 8.10 -2.39 -0.02 -0.53 16 38 H 0.11 -0.60 8.09 -2.39 -0.02 -0.62 16 39 H 0.06 -0.39 8.14 -2.39 -0.02 -0.41 16 40 H 0.09 -0.42 8.14 -2.39 -0.02 -0.43 16 41 H 0.05 -0.21 8.14 -2.39 -0.02 -0.23 16 42 H 0.07 0.84 7.21 -2.39 -0.02 0.83 16 43 H 0.11 0.77 7.35 -2.39 -0.02 0.75 16 Total: 0.00 -25.98 364.04 0.40 -25.57 By element: Atomic # 1 Polarization: -8.79 SS G_CDS: -0.88 Total: -9.68 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: 5.69 Total: 15.73 kcal Atomic # 7 Polarization: -2.20 SS G_CDS: -2.86 Total: -5.06 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: -3.67 Total: -24.08 kcal Atomic # 14 Polarization: -4.61 SS G_CDS: 2.12 Total: -2.49 kcal Total: -25.98 0.40 -25.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14247462_9865296.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.890 kcal (2) G-P(sol) polarization free energy of solvation -25.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds