Wall clock time and date at job start Sun Mar 7 2021 02:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42908 * 1 3 3 Si 1.86294 * 109.47186 * 2 1 4 4 H 1.48500 * 109.47268 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47216 * 299.99864 * 3 2 1 6 6 H 1.48510 * 109.47159 * 60.00079 * 3 2 1 7 7 C 1.50700 * 109.46760 * 120.00099 * 2 1 3 8 8 C 1.38400 * 119.82716 * 65.00088 * 7 2 1 9 9 C 1.37898 * 120.16774 * 180.02562 * 8 7 2 10 10 C 1.39835 * 119.82936 * 359.97438 * 9 8 7 11 11 C 1.47207 * 120.17097 * 179.97438 * 10 9 8 12 12 C 1.34808 * 120.00068 * 180.02562 * 11 10 9 13 13 C 1.46418 * 120.00182 * 179.72932 * 12 11 10 14 14 O 1.21697 * 120.00036 * 354.99094 * 13 12 11 15 15 N 1.34776 * 120.00393 * 174.99360 * 13 12 11 16 16 C 1.46213 * 118.86836 * 184.55707 * 15 13 12 17 17 C 1.55076 * 107.97815 * 115.95308 * 16 15 13 18 18 S 1.81474 * 108.40643 * 63.73904 * 17 16 15 19 19 O 1.42097 * 110.52771 * 218.40805 * 18 17 16 20 20 O 1.42104 * 110.51322 * 81.72014 * 18 17 16 21 21 N 1.64906 * 104.56446 * 330.06860 * 18 17 16 22 22 C 1.47512 * 126.17916 * 167.54074 * 21 18 17 23 23 C 1.54369 * 106.61977 * 207.68243 * 22 21 18 24 24 C 1.55547 * 105.11437 * 358.25669 * 23 22 21 25 25 C 1.45104 * 118.86242 * 4.83089 * 15 13 12 26 26 C 1.39837 * 119.65813 * 0.27717 * 10 9 8 27 27 C 1.37898 * 119.82516 * 359.44322 * 26 10 9 28 28 H 0.96700 * 113.99957 * 300.00612 * 1 2 3 29 29 H 1.08999 * 109.47326 * 239.99847 * 2 1 3 30 30 H 1.07995 * 119.92000 * 359.97438 * 8 7 2 31 31 H 1.08006 * 120.08323 * 179.97438 * 9 8 7 32 32 H 1.07998 * 119.99610 * 0.02562 * 11 10 9 33 33 H 1.08008 * 119.99781 * 359.97438 * 12 11 10 34 34 H 1.09004 * 109.56385 * 236.51383 * 16 15 13 35 35 H 1.08996 * 109.56145 * 356.84972 * 16 15 13 36 36 H 1.08996 * 110.01531 * 303.88619 * 17 16 15 37 37 H 1.09001 * 109.41297 * 183.23810 * 17 16 15 38 38 H 1.08998 * 110.03286 * 326.97966 * 22 21 18 39 39 H 1.09005 * 110.02602 * 88.34893 * 22 21 18 40 40 H 1.08994 * 110.36564 * 117.66846 * 23 22 21 41 41 H 1.09005 * 110.36408 * 239.98483 * 23 22 21 42 42 H 1.08999 * 111.41158 * 219.86221 * 24 23 22 43 43 H 1.09004 * 110.52914 * 96.07875 * 24 23 22 44 44 H 1.08993 * 109.92397 * 323.33492 * 25 15 13 45 45 H 1.08001 * 120.08898 * 179.70545 * 26 10 9 46 46 H 1.08003 * 119.91216 * 180.27807 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 1 3.5351 1.7564 0.0006 5 1 1.5551 2.4564 -1.2125 6 1 1.5551 2.4565 1.2126 7 6 1.9313 -0.7104 1.2305 8 6 1.6823 -2.0619 1.3949 9 6 2.1382 -2.7189 2.5183 10 6 2.8541 -2.0162 3.4926 11 6 3.3437 -2.7099 4.6950 12 6 4.0331 -2.0290 5.6323 13 6 4.5150 -2.7176 6.8312 14 8 4.2162 -3.8811 7.0261 15 7 5.2895 -2.0631 7.7190 16 6 5.8399 -2.8012 8.8548 17 6 7.3847 -2.8058 8.7194 18 16 7.9756 -1.0943 8.8403 19 8 9.0481 -0.8723 7.9350 20 8 8.0713 -0.6954 10.2008 21 7 6.7394 -0.1852 8.2364 22 6 6.6028 1.2797 8.3434 23 6 5.0904 1.5863 8.3020 24 6 4.4011 0.2038 8.1199 25 6 5.5436 -0.6487 7.5178 26 6 3.0970 -0.6497 3.3216 27 6 2.6396 -0.0081 2.1899 28 1 -0.3933 0.4418 0.7650 29 1 1.7924 -0.5138 -0.8900 30 1 1.1290 -2.6032 0.6419 31 1 1.9428 -3.7735 2.6455 32 1 3.1507 -3.7643 4.8263 33 1 4.2265 -0.9745 5.5007 34 1 5.5372 -2.3194 9.7845 35 1 5.4713 -3.8268 8.8366 36 1 7.6735 -3.2255 7.7558 37 1 7.8172 -3.4000 9.5245 38 1 7.0284 1.6266 9.2850 39 1 7.1056 1.7637 7.5061 40 1 4.7729 2.0558 9.2330 41 1 4.8568 2.2291 7.4532 42 1 3.5593 0.2666 7.4304 43 1 4.0855 -0.1958 9.0837 44 1 5.6442 -0.4371 6.4534 45 1 3.6451 -0.0992 4.0719 46 1 2.8303 1.0463 2.0543 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14250026_12360594.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:18:28 Heat of formation + Delta-G solvation = -69.813126 kcal Electronic energy + Delta-G solvation = -31334.929040 eV Core-core repulsion = 27012.199457 eV Total energy + Delta-G solvation = -4322.729583 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 366.125 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.83718 -40.75919 -39.58648 -38.12650 -37.92827 -37.12127 -36.56425 -35.29014 -33.08820 -32.32962 -32.02965 -31.21790 -29.34865 -27.49109 -25.60335 -24.40970 -24.22839 -23.42238 -22.62823 -21.65743 -20.85635 -19.41423 -19.30614 -18.86732 -18.51421 -17.82848 -17.47108 -17.16183 -16.82766 -16.64035 -16.50519 -16.31610 -16.19975 -15.84574 -15.45325 -15.35883 -15.16093 -14.95542 -14.86361 -14.52847 -14.43753 -14.26250 -13.98245 -13.93883 -13.62204 -13.39247 -13.22261 -13.14584 -13.06173 -12.97963 -12.75205 -12.59579 -12.39652 -12.29783 -12.15663 -11.96263 -11.77907 -11.69398 -11.50541 -11.22370 -10.67223 -10.54320 -10.14598 -10.07543 -9.43989 -1.01517 -0.74470 0.22210 0.70412 1.02979 1.18903 1.31675 1.40928 1.50238 1.81190 1.96947 2.38793 2.64242 2.93835 3.06026 3.12456 3.29531 3.33656 3.44365 3.49291 3.57189 3.62119 3.69027 3.75113 3.79453 3.89831 3.98365 3.99100 4.09583 4.15631 4.25007 4.27185 4.36880 4.42090 4.44487 4.48855 4.51707 4.66578 4.68411 4.74288 4.78550 4.83492 4.89647 4.92644 4.97650 5.15104 5.24292 5.32481 5.41501 5.72424 5.90322 6.41745 6.80989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.536 6.536 2 C -0.084 4.084 3 Si 0.949 3.051 4 H -0.249 1.249 5 H -0.253 1.253 6 H -0.251 1.251 7 C -0.104 4.104 8 C -0.092 4.092 9 C -0.089 4.089 10 C -0.078 4.078 11 C 0.001 3.999 12 C -0.230 4.230 13 C 0.562 3.438 14 O -0.526 6.526 15 N -0.629 5.629 16 C 0.125 3.875 17 C -0.636 4.636 18 S 2.625 3.375 19 O -0.950 6.950 20 O -0.951 6.951 21 N -1.020 6.020 22 C 0.123 3.877 23 C -0.130 4.130 24 C -0.146 4.146 25 C 0.371 3.629 26 C -0.092 4.092 27 C -0.128 4.128 28 H 0.377 0.623 29 H 0.120 0.880 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.140 0.860 33 H 0.135 0.865 34 H 0.095 0.905 35 H 0.125 0.875 36 H 0.144 0.856 37 H 0.154 0.846 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.105 0.895 45 H 0.131 0.869 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.527 2.591 -1.721 4.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.341 6.341 2 C -0.195 4.195 3 Si 0.772 3.228 4 H -0.173 1.173 5 H -0.177 1.177 6 H -0.175 1.175 7 C -0.104 4.104 8 C -0.110 4.110 9 C -0.107 4.107 10 C -0.078 4.078 11 C -0.019 4.019 12 C -0.251 4.251 13 C 0.353 3.647 14 O -0.403 6.403 15 N -0.364 5.364 16 C 0.001 3.999 17 C -0.767 4.767 18 S 2.721 3.279 19 O -0.940 6.940 20 O -0.940 6.940 21 N -0.861 5.861 22 C -0.001 4.001 23 C -0.169 4.169 24 C -0.187 4.187 25 C 0.180 3.820 26 C -0.110 4.110 27 C -0.146 4.146 28 H 0.224 0.776 29 H 0.138 0.862 30 H 0.151 0.849 31 H 0.151 0.849 32 H 0.157 0.843 33 H 0.153 0.847 34 H 0.113 0.887 35 H 0.143 0.857 36 H 0.162 0.838 37 H 0.172 0.828 38 H 0.103 0.897 39 H 0.096 0.904 40 H 0.103 0.897 41 H 0.101 0.899 42 H 0.108 0.892 43 H 0.102 0.898 44 H 0.123 0.877 45 H 0.148 0.852 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.317 2.759 -1.802 4.028 hybrid contribution -0.439 -0.634 0.477 0.906 sum -2.756 2.125 -1.326 3.724 Atomic orbital electron populations 1.86542 1.16891 1.81575 1.49134 1.25042 0.85320 1.10782 0.98348 0.85680 0.80630 0.75175 0.81348 1.17282 1.17652 1.17480 1.20524 0.98340 0.95081 0.96500 1.21017 0.98666 0.93629 0.97705 1.21486 0.95928 1.00221 0.93021 1.19033 1.00240 0.93639 0.94916 1.22480 0.89387 1.00071 0.89963 1.22936 1.05447 1.01184 0.95489 1.18285 0.77528 0.86064 0.82786 1.90854 1.56648 1.16610 1.76168 1.47852 1.52133 1.09631 1.26737 1.21475 0.87647 1.01688 0.89081 1.31160 1.07220 1.24960 1.13347 1.04551 0.72630 0.76403 0.74314 1.93635 1.51331 1.83661 1.65327 1.93626 1.85014 1.80323 1.35065 1.58707 1.36557 1.17976 1.72883 1.21938 0.97720 0.77397 1.03074 1.22660 0.93512 0.96896 1.03845 1.23320 0.97241 0.95285 1.02847 1.21349 0.84966 0.78639 0.97070 1.21324 0.98712 0.93610 0.97348 1.21016 0.99216 0.99866 0.94467 0.77578 0.86214 0.84885 0.84921 0.84269 0.84723 0.88723 0.85689 0.83799 0.82839 0.89680 0.90413 0.89742 0.89924 0.89155 0.89827 0.87732 0.85173 0.85737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.55 12.83 -35.23 -0.45 0.10 16 2 C -0.08 0.16 2.80 36.01 0.10 0.26 16 3 Si 0.95 -1.87 25.12 -169.99 -4.27 -6.14 16 4 H -0.25 0.34 7.11 56.52 0.40 0.74 16 5 H -0.25 0.05 7.11 56.52 0.40 0.45 16 6 H -0.25 0.52 7.04 56.52 0.40 0.92 16 7 C -0.10 0.15 5.36 -104.50 -0.56 -0.42 16 8 C -0.09 0.11 9.66 -39.65 -0.38 -0.27 16 9 C -0.09 0.13 9.80 -39.11 -0.38 -0.25 16 10 C -0.08 0.11 5.87 -105.06 -0.62 -0.51 16 11 C 0.00 0.00 9.46 -37.16 -0.35 -0.35 16 12 C -0.23 0.42 8.55 -37.51 -0.32 0.10 16 13 C 0.56 0.18 7.53 -12.97 -0.10 0.08 16 14 O -0.53 -1.94 15.47 5.19 0.08 -1.86 16 15 N -0.63 0.79 2.57 -169.97 -0.44 0.35 16 16 C 0.12 -0.19 6.28 -3.10 -0.02 -0.21 16 17 C -0.64 1.30 6.79 38.26 0.26 1.56 16 18 S 2.63 1.99 5.94 -107.50 -0.64 1.35 16 19 O -0.95 -4.18 18.10 -57.54 -1.04 -5.22 16 20 O -0.95 -3.55 17.97 -57.54 -1.03 -4.58 16 21 N -1.02 1.11 3.44 -108.39 -0.37 0.74 16 22 C 0.12 -0.30 7.23 -2.77 -0.02 -0.32 16 23 C -0.13 0.56 6.97 -24.66 -0.17 0.39 16 24 C -0.15 0.57 6.80 -24.46 -0.17 0.40 16 25 C 0.37 -0.96 2.89 -127.66 -0.37 -1.33 16 26 C -0.09 0.20 9.41 -39.11 -0.37 -0.17 16 27 C -0.13 0.23 8.65 -39.65 -0.34 -0.11 16 28 H 0.38 -1.59 8.70 45.56 0.40 -1.19 16 29 H 0.12 -0.31 7.96 -51.93 -0.41 -0.72 16 30 H 0.13 -0.26 8.06 -52.49 -0.42 -0.68 16 31 H 0.13 -0.39 8.06 -52.48 -0.42 -0.81 16 32 H 0.14 -0.13 7.53 -52.49 -0.40 -0.52 16 33 H 0.14 -0.59 4.21 -52.48 -0.22 -0.82 16 34 H 0.09 -0.26 8.14 -51.93 -0.42 -0.68 16 35 H 0.13 -0.10 6.80 -51.93 -0.35 -0.46 16 36 H 0.14 -0.34 8.14 -51.93 -0.42 -0.76 16 37 H 0.15 -0.63 8.14 -51.93 -0.42 -1.05 16 38 H 0.08 -0.16 8.09 -51.93 -0.42 -0.58 16 39 H 0.08 -0.25 8.14 -51.93 -0.42 -0.68 16 40 H 0.08 -0.37 8.14 -51.93 -0.42 -0.79 16 41 H 0.08 -0.47 8.14 -51.93 -0.42 -0.89 16 42 H 0.09 -0.46 8.10 -51.93 -0.42 -0.89 16 43 H 0.08 -0.25 8.14 -51.93 -0.42 -0.67 16 44 H 0.11 -0.43 6.24 -51.93 -0.32 -0.76 16 45 H 0.13 -0.58 6.17 -52.49 -0.32 -0.90 16 46 H 0.13 -0.38 4.84 -52.48 -0.25 -0.63 16 LS Contribution 378.47 15.07 5.70 5.70 Total: 0.00 -11.48 378.47 -11.61 -23.08 By element: Atomic # 1 Polarization: -7.05 SS G_CDS: -5.33 Total: -12.38 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -3.81 Total: -1.15 kcal Atomic # 7 Polarization: 1.90 SS G_CDS: -0.81 Total: 1.09 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: -2.45 Total: -11.55 kcal Atomic # 14 Polarization: -1.87 SS G_CDS: -4.27 Total: -6.14 kcal Atomic # 16 Polarization: 1.99 SS G_CDS: -0.64 Total: 1.35 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -11.48 -11.61 -23.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14250026_12360594.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.731 kcal (2) G-P(sol) polarization free energy of solvation -11.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds