Wall clock time and date at job start Sun Mar 7 2021 02:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42908 * 1 3 3 Si 1.86294 * 109.47186 * 2 1 4 4 H 1.48500 * 109.47268 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47216 * 299.99864 * 3 2 1 6 6 H 1.48510 * 109.47159 * 60.00079 * 3 2 1 7 7 C 1.50700 * 109.46760 * 120.00099 * 2 1 3 8 8 C 1.38400 * 119.82716 * 65.00088 * 7 2 1 9 9 C 1.37898 * 120.16774 * 180.02562 * 8 7 2 10 10 C 1.39835 * 119.82936 * 359.97438 * 9 8 7 11 11 C 1.47207 * 120.17097 * 179.97438 * 10 9 8 12 12 C 1.34808 * 120.00068 * 180.02562 * 11 10 9 13 13 C 1.46418 * 120.00182 * 179.72932 * 12 11 10 14 14 O 1.21697 * 120.00036 * 354.99094 * 13 12 11 15 15 N 1.34776 * 120.00393 * 174.99360 * 13 12 11 16 16 C 1.46213 * 118.86836 * 184.55707 * 15 13 12 17 17 C 1.55076 * 107.97815 * 115.95308 * 16 15 13 18 18 S 1.81474 * 108.40643 * 63.73904 * 17 16 15 19 19 O 1.42097 * 110.52771 * 218.40805 * 18 17 16 20 20 O 1.42104 * 110.51322 * 81.72014 * 18 17 16 21 21 N 1.64906 * 104.56446 * 330.06860 * 18 17 16 22 22 C 1.47512 * 126.17916 * 167.54074 * 21 18 17 23 23 C 1.54369 * 106.61977 * 207.68243 * 22 21 18 24 24 C 1.55547 * 105.11437 * 358.25669 * 23 22 21 25 25 C 1.45104 * 118.86242 * 4.83089 * 15 13 12 26 26 C 1.39837 * 119.65813 * 0.27717 * 10 9 8 27 27 C 1.37898 * 119.82516 * 359.44322 * 26 10 9 28 28 H 0.96700 * 113.99957 * 300.00612 * 1 2 3 29 29 H 1.08999 * 109.47326 * 239.99847 * 2 1 3 30 30 H 1.07995 * 119.92000 * 359.97438 * 8 7 2 31 31 H 1.08006 * 120.08323 * 179.97438 * 9 8 7 32 32 H 1.07998 * 119.99610 * 0.02562 * 11 10 9 33 33 H 1.08008 * 119.99781 * 359.97438 * 12 11 10 34 34 H 1.09004 * 109.56385 * 236.51383 * 16 15 13 35 35 H 1.08996 * 109.56145 * 356.84972 * 16 15 13 36 36 H 1.08996 * 110.01531 * 303.88619 * 17 16 15 37 37 H 1.09001 * 109.41297 * 183.23810 * 17 16 15 38 38 H 1.08998 * 110.03286 * 326.97966 * 22 21 18 39 39 H 1.09005 * 110.02602 * 88.34893 * 22 21 18 40 40 H 1.08994 * 110.36564 * 117.66846 * 23 22 21 41 41 H 1.09005 * 110.36408 * 239.98483 * 23 22 21 42 42 H 1.08999 * 111.41158 * 219.86221 * 24 23 22 43 43 H 1.09004 * 110.52914 * 96.07875 * 24 23 22 44 44 H 1.08993 * 109.92397 * 323.33492 * 25 15 13 45 45 H 1.08001 * 120.08898 * 179.70545 * 26 10 9 46 46 H 1.08003 * 119.91216 * 180.27807 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 1 3.5351 1.7564 0.0006 5 1 1.5551 2.4564 -1.2125 6 1 1.5551 2.4565 1.2126 7 6 1.9313 -0.7104 1.2305 8 6 1.6823 -2.0619 1.3949 9 6 2.1382 -2.7189 2.5183 10 6 2.8541 -2.0162 3.4926 11 6 3.3437 -2.7099 4.6950 12 6 4.0331 -2.0290 5.6323 13 6 4.5150 -2.7176 6.8312 14 8 4.2162 -3.8811 7.0261 15 7 5.2895 -2.0631 7.7190 16 6 5.8399 -2.8012 8.8548 17 6 7.3847 -2.8058 8.7194 18 16 7.9756 -1.0943 8.8403 19 8 9.0481 -0.8723 7.9350 20 8 8.0713 -0.6954 10.2008 21 7 6.7394 -0.1852 8.2364 22 6 6.6028 1.2797 8.3434 23 6 5.0904 1.5863 8.3020 24 6 4.4011 0.2038 8.1199 25 6 5.5436 -0.6487 7.5178 26 6 3.0970 -0.6497 3.3216 27 6 2.6396 -0.0081 2.1899 28 1 -0.3933 0.4418 0.7650 29 1 1.7924 -0.5138 -0.8900 30 1 1.1290 -2.6032 0.6419 31 1 1.9428 -3.7735 2.6455 32 1 3.1507 -3.7643 4.8263 33 1 4.2265 -0.9745 5.5007 34 1 5.5372 -2.3194 9.7845 35 1 5.4713 -3.8268 8.8366 36 1 7.6735 -3.2255 7.7558 37 1 7.8172 -3.4000 9.5245 38 1 7.0284 1.6266 9.2850 39 1 7.1056 1.7637 7.5061 40 1 4.7729 2.0558 9.2330 41 1 4.8568 2.2291 7.4532 42 1 3.5593 0.2666 7.4304 43 1 4.0855 -0.1958 9.0837 44 1 5.6442 -0.4371 6.4534 45 1 3.6451 -0.0992 4.0719 46 1 2.8303 1.0463 2.0543 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14250026_12360594.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:18:27 Heat of formation + Delta-G solvation = -73.423358 kcal Electronic energy + Delta-G solvation = -31335.085592 eV Core-core repulsion = 27012.199457 eV Total energy + Delta-G solvation = -4322.886135 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 366.125 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.75043 -40.57478 -39.48036 -38.29352 -37.77652 -37.26072 -36.50131 -35.17025 -32.97951 -32.14296 -31.81711 -31.05980 -29.15596 -27.35081 -25.47379 -24.24978 -24.04501 -23.26976 -22.39777 -21.48928 -20.75771 -19.30833 -19.27578 -18.78876 -18.37641 -17.76209 -17.44126 -17.00992 -16.73613 -16.65968 -16.38926 -16.14373 -16.05609 -15.70437 -15.30495 -15.19002 -15.01544 -14.83207 -14.71956 -14.37664 -14.31150 -14.13191 -13.84249 -13.79312 -13.53705 -13.37739 -13.26327 -13.20007 -13.03606 -12.76665 -12.65032 -12.32361 -12.21215 -12.14166 -12.01965 -11.77550 -11.63164 -11.52784 -11.36606 -11.24047 -10.56033 -10.38051 -9.96505 -9.95080 -9.27241 -1.03384 -0.59888 0.40775 0.82325 1.20285 1.26461 1.48169 1.55222 1.59289 1.95518 2.05249 2.39724 2.81364 3.01314 3.17080 3.30328 3.44554 3.55767 3.65498 3.75739 3.77081 3.78678 3.88376 3.92412 4.01456 4.13569 4.18778 4.23883 4.36119 4.37362 4.42770 4.46630 4.51416 4.56067 4.63012 4.75406 4.77685 4.85306 4.93019 4.95576 5.04582 5.07824 5.10047 5.21116 5.25902 5.34830 5.42977 5.50239 5.58213 5.91414 6.01133 6.71952 6.85240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.553 6.553 2 C -0.084 4.084 3 Si 0.981 3.019 4 H -0.255 1.255 5 H -0.282 1.282 6 H -0.244 1.244 7 C -0.109 4.109 8 C -0.105 4.105 9 C -0.098 4.098 10 C -0.085 4.085 11 C -0.001 4.001 12 C -0.226 4.226 13 C 0.559 3.441 14 O -0.568 6.568 15 N -0.625 5.625 16 C 0.118 3.882 17 C -0.616 4.616 18 S 2.629 3.371 19 O -0.994 6.994 20 O -0.988 6.988 21 N -1.021 6.021 22 C 0.112 3.888 23 C -0.122 4.122 24 C -0.143 4.143 25 C 0.363 3.637 26 C -0.092 4.092 27 C -0.136 4.136 28 H 0.389 0.611 29 H 0.122 0.878 30 H 0.134 0.866 31 H 0.140 0.860 32 H 0.128 0.872 33 H 0.165 0.835 34 H 0.106 0.894 35 H 0.120 0.880 36 H 0.151 0.849 37 H 0.176 0.824 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.105 0.895 42 H 0.111 0.889 43 H 0.073 0.927 44 H 0.127 0.873 45 H 0.157 0.843 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.142 3.486 -1.876 5.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.360 6.360 2 C -0.195 4.195 3 Si 0.806 3.194 4 H -0.179 1.179 5 H -0.208 1.208 6 H -0.167 1.167 7 C -0.110 4.110 8 C -0.123 4.123 9 C -0.116 4.116 10 C -0.086 4.086 11 C -0.021 4.021 12 C -0.246 4.246 13 C 0.352 3.648 14 O -0.448 6.448 15 N -0.359 5.359 16 C -0.006 4.006 17 C -0.749 4.749 18 S 2.729 3.271 19 O -0.983 6.983 20 O -0.978 6.978 21 N -0.864 5.864 22 C -0.012 4.012 23 C -0.161 4.161 24 C -0.184 4.184 25 C 0.173 3.827 26 C -0.109 4.109 27 C -0.154 4.154 28 H 0.239 0.761 29 H 0.140 0.860 30 H 0.152 0.848 31 H 0.157 0.843 32 H 0.146 0.854 33 H 0.182 0.818 34 H 0.124 0.876 35 H 0.138 0.862 36 H 0.169 0.831 37 H 0.194 0.806 38 H 0.091 0.909 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.123 0.877 42 H 0.130 0.870 43 H 0.092 0.908 44 H 0.144 0.856 45 H 0.174 0.826 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.913 3.703 -1.930 5.091 hybrid contribution -0.293 -0.942 0.510 1.111 sum -3.206 2.761 -1.420 4.463 Atomic orbital electron populations 1.86507 1.17419 1.81951 1.50152 1.25093 0.84969 1.10990 0.98423 0.85226 0.79731 0.74392 0.80067 1.17943 1.20789 1.16736 1.20628 0.98464 0.95086 0.96782 1.21111 0.99173 0.93988 0.97984 1.21658 0.96007 1.00786 0.93116 1.19087 1.00520 0.94170 0.94773 1.22435 0.89595 0.99745 0.90291 1.23038 1.05002 1.02320 0.94257 1.18623 0.77240 0.85622 0.83299 1.90838 1.58348 1.18426 1.77140 1.47910 1.51482 1.10203 1.26314 1.21581 0.87643 1.01669 0.89685 1.31014 1.06933 1.22261 1.14739 1.04077 0.72525 0.77372 0.73138 1.93583 1.53888 1.84895 1.65980 1.93579 1.85826 1.81609 1.36782 1.58520 1.36462 1.18545 1.72901 1.22153 0.99478 0.76627 1.02936 1.22660 0.91612 0.96946 1.04907 1.23350 0.97245 0.94966 1.02817 1.21753 0.84822 0.77941 0.98212 1.21630 0.98261 0.93317 0.97728 1.21216 0.99134 1.00539 0.94474 0.76147 0.86044 0.84838 0.84264 0.85390 0.81815 0.87551 0.86236 0.83091 0.80612 0.90874 0.89491 0.89725 0.87669 0.87029 0.90821 0.85579 0.82553 0.84492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.19 12.83 -148.98 -1.91 -0.73 16 2 C -0.08 0.34 2.80 71.24 0.20 0.54 16 3 Si 0.98 -4.36 25.12 68.60 1.72 -2.64 16 4 H -0.26 0.90 7.11 99.48 0.71 1.60 16 5 H -0.28 -0.09 7.11 99.48 0.71 0.61 16 6 H -0.24 1.39 7.04 99.48 0.70 2.09 16 7 C -0.11 0.36 5.36 -19.79 -0.11 0.26 16 8 C -0.10 0.25 9.66 22.23 0.21 0.47 16 9 C -0.10 0.28 9.80 22.58 0.22 0.50 16 10 C -0.09 0.32 5.87 -20.15 -0.12 0.20 16 11 C 0.00 0.00 9.46 23.84 0.23 0.23 16 12 C -0.23 1.14 8.55 23.61 0.20 1.34 16 13 C 0.56 0.07 7.53 86.37 0.65 0.72 16 14 O -0.57 -4.51 15.47 -4.34 -0.07 -4.58 16 15 N -0.63 2.05 2.57 -809.88 -2.08 -0.03 16 16 C 0.12 -0.39 6.28 87.14 0.55 0.15 16 17 C -0.62 2.64 6.79 72.69 0.49 3.13 16 18 S 2.63 5.91 5.94 -56.49 -0.34 5.57 16 19 O -0.99 -9.95 18.10 -127.65 -2.31 -12.26 16 20 O -0.99 -8.69 17.97 -127.65 -2.29 -10.98 16 21 N -1.02 2.54 3.44 -496.83 -1.71 0.83 16 22 C 0.11 -0.59 7.23 86.65 0.63 0.04 16 23 C -0.12 1.28 6.97 31.94 0.22 1.50 16 24 C -0.14 1.39 6.80 32.06 0.22 1.61 16 25 C 0.36 -2.40 2.89 130.49 0.38 -2.02 16 26 C -0.09 0.57 9.41 22.58 0.21 0.78 16 27 C -0.14 0.69 8.65 22.23 0.19 0.88 16 28 H 0.39 -3.39 8.70 -74.06 -0.64 -4.04 16 29 H 0.12 -0.60 7.96 -2.39 -0.02 -0.62 16 30 H 0.13 -0.44 8.06 -2.91 -0.02 -0.46 16 31 H 0.14 -0.73 8.06 -2.91 -0.02 -0.75 16 32 H 0.13 -0.14 7.53 -2.91 -0.02 -0.16 16 33 H 0.16 -1.96 4.21 -2.91 -0.01 -1.97 16 34 H 0.11 -0.61 8.14 -2.39 -0.02 -0.63 16 35 H 0.12 -0.17 6.80 -2.39 -0.02 -0.18 16 36 H 0.15 -0.77 8.14 -2.39 -0.02 -0.79 16 37 H 0.18 -1.55 8.14 -2.39 -0.02 -1.56 16 38 H 0.07 -0.22 8.09 -2.39 -0.02 -0.24 16 39 H 0.09 -0.63 8.14 -2.38 -0.02 -0.65 16 40 H 0.08 -0.85 8.14 -2.39 -0.02 -0.87 16 41 H 0.10 -1.53 8.14 -2.38 -0.02 -1.55 16 42 H 0.11 -1.51 8.10 -2.39 -0.02 -1.53 16 43 H 0.07 -0.53 8.14 -2.39 -0.02 -0.55 16 44 H 0.13 -1.38 6.24 -2.39 -0.01 -1.40 16 45 H 0.16 -1.94 6.17 -2.91 -0.02 -1.95 16 46 H 0.14 -1.10 4.84 -2.91 -0.01 -1.12 16 Total: 0.00 -27.72 378.47 -3.47 -31.19 By element: Atomic # 1 Polarization: -17.84 SS G_CDS: 1.13 Total: -16.71 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: 4.38 Total: 10.33 kcal Atomic # 7 Polarization: 4.59 SS G_CDS: -3.79 Total: 0.80 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -6.58 Total: -28.54 kcal Atomic # 14 Polarization: -4.36 SS G_CDS: 1.72 Total: -2.64 kcal Atomic # 16 Polarization: 5.91 SS G_CDS: -0.34 Total: 5.57 kcal Total: -27.72 -3.47 -31.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14250026_12360594.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.231 kcal (2) G-P(sol) polarization free energy of solvation -27.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds