Wall clock time and date at job start Sun Mar 7 2021 00:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42900 * 109.47151 * 2 1 4 4 C 1.35896 * 117.00252 * 275.31908 * 3 2 1 5 5 C 1.38740 * 120.05089 * 5.08997 * 4 3 2 6 6 C 1.38145 * 119.93750 * 179.70084 * 5 4 3 7 7 C 1.38263 * 120.06044 * 0.59090 * 6 5 4 8 8 C 1.50698 * 119.94519 * 179.70381 * 7 6 5 9 9 O 1.42900 * 109.47030 * 119.97995 * 8 7 6 10 10 Si 1.86295 * 109.47248 * 359.97438 * 8 7 6 11 11 C 1.38263 * 120.10750 * 359.68384 * 7 6 5 12 12 C 1.38140 * 120.05927 * 0.02562 * 11 7 6 13 13 C 1.50706 * 109.46796 * 119.99765 * 2 1 3 14 14 O 1.21283 * 120.00128 * 244.99985 * 13 2 1 15 15 N 1.34771 * 120.00042 * 65.00209 * 13 2 1 16 16 C 1.46497 * 120.00184 * 179.97438 * 15 13 2 17 17 H 1.09002 * 112.84957 * 23.80596 * 16 15 13 18 18 C 1.53779 * 113.61679 * 154.99744 * 16 15 13 19 19 C 1.53781 * 87.08080 * 89.20337 * 18 16 15 20 20 H 1.09002 * 113.61592 * 270.88366 * 19 18 16 21 21 C 1.50698 * 113.61857 * 139.98412 * 19 18 16 22 22 C 1.37920 * 119.92872 * 119.72308 * 21 19 18 23 23 C 1.39655 * 119.84944 * 179.74957 * 22 21 19 24 24 C 1.43198 * 120.15158 * 180.27251 * 23 22 21 25 25 N 9.93449 * 107.73317 * 246.38201 * 13 1 2 26 26 C 1.39609 * 119.69552 * 0.52802 * 23 22 21 27 27 C 1.37971 * 119.84951 * 359.74452 * 26 23 22 28 28 C 1.38341 * 120.14816 * 359.97438 * 27 26 23 29 29 C 1.53781 * 87.08235 * 25.43115 * 19 18 16 30 30 H 1.08998 * 109.47361 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47523 * 300.00185 * 1 2 3 32 32 H 1.09006 * 109.47237 * 60.00226 * 1 2 3 33 33 H 1.09001 * 109.47523 * 239.99815 * 2 1 3 34 34 H 1.08000 * 120.03110 * 359.97438 * 5 4 3 35 35 H 1.08008 * 119.96834 * 180.26984 * 6 5 4 36 36 H 1.09001 * 109.47102 * 239.97945 * 8 7 6 37 37 H 0.96699 * 113.99898 * 299.99519 * 9 8 7 38 38 H 1.48505 * 110.00220 * 58.68218 * 10 8 7 39 39 H 1.48499 * 110.00064 * 180.02562 * 10 8 7 40 40 H 1.07999 * 119.97103 * 180.02562 * 11 7 6 41 41 H 1.07996 * 120.02925 * 179.97438 * 12 11 7 42 42 H 0.96999 * 120.00024 * 0.02562 * 15 13 2 43 43 H 1.08997 * 113.61418 * 334.65435 * 18 16 15 44 44 H 1.08995 * 113.69169 * 203.75877 * 18 16 15 45 45 H 1.08003 * 120.07561 * 0.02562 * 22 21 19 46 46 H 1.08007 * 120.07866 * 179.72499 * 26 23 22 47 47 H 1.07996 * 119.92705 * 180.02562 * 27 26 23 48 48 H 1.07998 * 119.84610 * 179.97438 * 28 27 26 49 49 H 1.09002 * 113.61342 * 89.11463 * 29 19 18 50 50 H 1.09002 * 113.61779 * 220.01969 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.1061 1.9664 -1.2056 5 6 1.6544 1.3303 -2.3528 6 6 1.7514 1.9643 -3.5764 7 6 2.3091 3.2267 -3.6599 8 6 2.4197 3.9132 -4.9969 9 8 1.6858 5.1389 -4.9651 10 14 1.7226 2.8061 -6.3231 11 6 2.7652 3.8604 -2.5188 12 6 2.6651 3.2331 -1.2921 13 6 2.0322 -0.7104 1.2306 14 8 2.6528 -0.0979 2.0735 15 7 1.7918 -2.0263 1.3943 16 6 2.2805 -2.7171 2.5902 17 1 2.4417 -2.0434 3.4319 18 6 1.4682 -3.9716 2.9522 19 6 2.4271 -4.7587 2.0434 20 1 2.1045 -4.8038 1.0032 21 6 2.8137 -6.1061 2.5965 22 6 2.5155 -7.2518 1.8888 23 6 2.8792 -8.4993 2.4004 24 6 2.5780 -9.6925 1.6682 25 7 2.3397 -10.6391 1.0883 26 6 3.5329 -8.5781 3.6315 27 6 3.8200 -7.4244 4.3316 28 6 3.4620 -6.1915 3.8161 29 6 3.4657 -3.6586 2.3190 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.2233 0.3421 -2.2888 35 1 1.3959 1.4713 -4.4692 36 1 3.4676 4.1226 -5.2122 37 1 0.7435 5.0284 -4.7782 38 1 0.3033 2.4872 -6.0243 39 1 1.8264 3.4715 -7.6466 40 1 3.2001 4.8466 -2.5866 41 1 3.0218 3.7284 -0.4011 42 1 1.2958 -2.5163 0.7199 43 1 0.4416 -3.9475 2.5869 44 1 1.5369 -4.2495 4.0039 45 1 2.0060 -7.1840 0.9389 46 1 3.8130 -9.5400 4.0351 47 1 4.3260 -7.4839 5.2839 48 1 3.6888 -5.2916 4.3685 49 1 4.0815 -3.8498 3.1979 50 1 4.0516 -3.3817 1.4425 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14329782_10157680.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:41:48 Heat of formation + Delta-G solvation = 14.859624 kcal Electronic energy + Delta-G solvation = -32405.215694 eV Core-core repulsion = 27944.665060 eV Total energy + Delta-G solvation = -4460.550634 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 379.162 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -41.91326 -41.31381 -40.43259 -39.38155 -38.72109 -37.45646 -37.24721 -34.88472 -33.22393 -32.21618 -32.04145 -31.71998 -31.30449 -26.82611 -26.62184 -26.37531 -25.32846 -24.75280 -24.06029 -22.81906 -22.48981 -21.49996 -20.73221 -19.52775 -18.94696 -18.60072 -18.16244 -17.29818 -17.15394 -16.86691 -16.74305 -16.61587 -16.23711 -16.10938 -15.93345 -15.61781 -15.54804 -15.17148 -15.14642 -14.87707 -14.63723 -14.50278 -14.42467 -14.14966 -14.07173 -13.98313 -13.76753 -13.59016 -13.53349 -13.37959 -13.21118 -12.95649 -12.88635 -12.77318 -12.46482 -12.25172 -12.08460 -12.05834 -11.72717 -11.64733 -11.57720 -11.18571 -10.89935 -10.58451 -10.12141 -10.02870 -9.88778 -9.63667 -9.21627 -4.90255 -0.16864 0.27701 0.31161 0.39988 1.34543 1.43064 1.51345 1.58693 1.62008 1.93119 1.99405 2.51308 2.65555 2.84832 2.88032 3.44490 3.48151 3.52874 3.68626 3.73129 3.73615 3.76760 3.87084 3.88157 3.95614 3.97138 4.04809 4.21382 4.22405 4.30155 4.35346 4.38106 4.54132 4.55316 4.62193 4.64040 4.72766 4.74124 4.80594 4.87048 4.92585 4.97764 5.03627 5.08631 5.11488 5.12098 5.19962 5.22050 5.26537 5.37266 5.44398 5.50133 5.52939 5.69498 5.72311 5.91991 6.28322 6.41784 6.48647 6.51620 7.13954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.063 3.937 3 O -0.314 6.314 4 C 0.122 3.878 5 C -0.202 4.202 6 C -0.074 4.074 7 C -0.158 4.158 8 C -0.082 4.082 9 O -0.551 6.551 10 Si 0.770 3.230 11 C -0.059 4.059 12 C -0.167 4.167 13 C 0.519 3.481 14 O -0.569 6.569 15 N -0.690 5.690 16 C 0.111 3.889 17 H 0.083 0.917 18 C -0.123 4.123 19 C -0.065 4.065 20 H 0.117 0.883 21 C -0.074 4.074 22 C -0.066 4.066 23 C -0.046 4.046 24 C 0.277 3.723 25 N -0.474 5.474 26 C -0.077 4.077 27 C -0.118 4.118 28 C -0.084 4.084 29 C -0.143 4.143 30 H 0.112 0.888 31 H 0.057 0.943 32 H 0.085 0.915 33 H 0.131 0.869 34 H 0.163 0.837 35 H 0.154 0.846 36 H 0.121 0.879 37 H 0.386 0.614 38 H -0.277 1.277 39 H -0.308 1.308 40 H 0.133 0.867 41 H 0.125 0.875 42 H 0.420 0.580 43 H 0.091 0.909 44 H 0.105 0.895 45 H 0.143 0.857 46 H 0.138 0.862 47 H 0.153 0.847 48 H 0.148 0.852 49 H 0.102 0.898 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.755 -2.631 0.289 3.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.003 3.997 3 O -0.227 6.227 4 C 0.077 3.923 5 C -0.220 4.220 6 C -0.091 4.091 7 C -0.159 4.159 8 C -0.190 4.190 9 O -0.359 6.359 10 Si 0.675 3.325 11 C -0.078 4.078 12 C -0.186 4.186 13 C 0.305 3.695 14 O -0.447 6.447 15 N -0.343 5.343 16 C 0.005 3.995 17 H 0.101 0.899 18 C -0.161 4.161 19 C -0.083 4.083 20 H 0.135 0.865 21 C -0.074 4.074 22 C -0.086 4.086 23 C -0.050 4.050 24 C -0.038 4.038 25 N -0.150 5.150 26 C -0.098 4.098 27 C -0.136 4.136 28 C -0.103 4.103 29 C -0.182 4.182 30 H 0.131 0.869 31 H 0.076 0.924 32 H 0.104 0.896 33 H 0.149 0.851 34 H 0.181 0.819 35 H 0.171 0.829 36 H 0.139 0.861 37 H 0.235 0.765 38 H -0.203 1.203 39 H -0.237 1.237 40 H 0.151 0.849 41 H 0.143 0.857 42 H 0.259 0.741 43 H 0.109 0.891 44 H 0.123 0.877 45 H 0.161 0.839 46 H 0.156 0.844 47 H 0.170 0.830 48 H 0.166 0.834 49 H 0.120 0.880 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.662 -3.450 -0.548 3.869 hybrid contribution -0.718 0.969 0.487 1.301 sum -2.381 -2.481 -0.061 3.439 Atomic orbital electron populations 1.22379 0.90594 1.05839 1.04257 1.22458 0.97099 0.82073 0.98024 1.86196 1.81414 1.27173 1.27956 1.19232 0.95692 0.92913 0.84465 1.21491 1.06314 1.02744 0.91433 1.21060 0.96540 0.93693 0.97854 1.20281 1.03396 0.96320 0.95909 1.25233 1.01985 0.91597 1.00216 1.86569 1.25738 1.30257 1.93384 0.94162 0.81095 0.83943 0.73260 1.20902 0.96610 0.99503 0.90737 1.20619 1.04397 0.94451 0.99093 1.20505 0.78914 0.82776 0.87321 1.90758 1.41525 1.67106 1.45329 1.45375 1.57192 1.07730 1.24035 1.21915 0.96294 0.93383 0.87866 0.89886 1.23402 0.99134 0.92104 1.01473 1.21630 0.96950 0.89067 1.00655 0.86471 1.19692 0.98513 0.94333 0.94871 1.21221 0.97468 0.89787 1.00131 1.16108 1.06216 0.87006 0.95656 1.26143 0.92257 0.92868 0.92493 1.81298 1.10744 1.12275 1.10693 1.21401 0.95580 1.00587 0.92193 1.21367 0.99889 0.91367 1.00971 1.21595 0.95053 0.98812 0.94802 1.23593 0.96530 0.94751 1.03285 0.86943 0.92420 0.89630 0.85135 0.81939 0.82923 0.86135 0.76527 1.20347 1.23675 0.84929 0.85659 0.74137 0.89080 0.87655 0.83901 0.84399 0.82951 0.83443 0.88001 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 1.41 9.12 71.98 0.66 2.07 16 2 C 0.06 -0.22 2.64 29.85 0.08 -0.14 16 3 O -0.31 -1.63 9.34 -73.40 -0.69 -2.32 16 4 C 0.12 0.33 6.60 22.51 0.15 0.48 16 5 C -0.20 0.68 8.24 22.37 0.18 0.86 16 6 C -0.07 0.27 8.66 22.25 0.19 0.47 16 7 C -0.16 0.09 5.39 -19.85 -0.11 -0.02 16 8 C -0.08 0.10 2.82 71.24 0.20 0.30 16 9 O -0.55 -1.32 12.77 -148.98 -1.90 -3.22 16 10 Si 0.77 -2.76 29.78 68.60 2.04 -0.72 16 11 C -0.06 -0.13 9.60 22.25 0.21 0.08 16 12 C -0.17 -0.72 9.99 22.36 0.22 -0.49 16 13 C 0.52 0.39 7.18 87.66 0.63 1.02 16 14 O -0.57 -7.10 16.11 15.95 0.26 -6.84 16 15 N -0.69 5.26 5.23 -440.04 -2.30 2.96 16 16 C 0.11 -0.74 4.32 45.52 0.20 -0.55 16 17 H 0.08 -0.08 7.46 -2.39 -0.02 -0.10 16 18 C -0.12 1.42 7.29 31.12 0.23 1.64 16 19 C -0.06 0.75 3.85 -11.01 -0.04 0.71 16 20 H 0.12 -1.70 8.09 -2.39 -0.02 -1.72 16 21 C -0.07 0.65 5.28 -19.90 -0.11 0.54 16 22 C -0.07 0.42 9.41 22.54 0.21 0.64 16 23 C -0.05 0.13 5.73 -21.36 -0.12 0.01 16 24 C 0.28 0.98 15.33 88.34 1.35 2.33 16 25 N -0.47 -4.78 18.53 19.00 0.35 -4.42 16 26 C -0.08 0.41 9.76 22.54 0.22 0.63 16 27 C -0.12 0.98 10.03 22.23 0.22 1.20 16 28 C -0.08 0.77 8.60 22.33 0.19 0.96 16 29 C -0.14 1.21 7.25 31.12 0.23 1.43 16 30 H 0.11 -1.67 7.93 -2.39 -0.02 -1.69 16 31 H 0.06 -0.19 8.14 -2.39 -0.02 -0.21 16 32 H 0.08 -0.76 6.91 -2.38 -0.02 -0.78 16 33 H 0.13 -1.32 6.31 -2.39 -0.02 -1.34 16 34 H 0.16 -1.66 5.43 -2.91 -0.02 -1.67 16 35 H 0.15 -1.34 4.87 -2.91 -0.01 -1.36 16 36 H 0.12 -0.27 7.96 -2.39 -0.02 -0.29 16 37 H 0.39 -1.26 8.70 -74.06 -0.64 -1.91 16 38 H -0.28 0.22 7.11 99.48 0.71 0.92 16 39 H -0.31 -1.54 7.11 99.48 0.71 -0.83 16 40 H 0.13 0.20 8.06 -2.91 -0.02 0.17 16 41 H 0.13 0.62 8.06 -2.91 -0.02 0.60 16 42 H 0.42 -6.36 8.49 -92.71 -0.79 -7.15 16 43 H 0.09 -1.20 8.14 -2.39 -0.02 -1.22 16 44 H 0.11 -1.23 7.72 -2.39 -0.02 -1.25 16 45 H 0.14 -1.32 8.05 -2.91 -0.02 -1.34 16 46 H 0.14 -0.96 8.06 -2.91 -0.02 -0.99 16 47 H 0.15 -1.82 8.06 -2.91 -0.02 -1.85 16 48 H 0.15 -1.83 6.64 -2.91 -0.02 -1.85 16 49 H 0.10 -0.93 6.30 -2.39 -0.02 -0.95 16 50 H 0.07 -0.43 8.14 -2.39 -0.02 -0.45 16 Total: 0.00 -30.02 420.60 2.38 -27.64 By element: Atomic # 1 Polarization: -26.86 SS G_CDS: -0.38 Total: -27.24 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: 5.00 Total: 14.17 kcal Atomic # 7 Polarization: 0.48 SS G_CDS: -1.95 Total: -1.47 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: -2.33 Total: -12.38 kcal Atomic # 14 Polarization: -2.76 SS G_CDS: 2.04 Total: -0.72 kcal Total: -30.02 2.38 -27.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14329782_10157680.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.499 kcal (2) G-P(sol) polarization free energy of solvation -30.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds