Wall clock time and date at job start Sun Mar 7 2021 00:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35537 * 125.67744 * 2 1 4 4 C 1.35460 * 108.86797 * 180.30283 * 3 2 1 5 5 C 1.50696 * 126.06334 * 179.69400 * 4 3 2 6 6 O 1.42896 * 109.47438 * 245.03793 * 5 4 3 7 7 Si 1.86299 * 109.47426 * 5.03776 * 5 4 3 8 8 C 1.39832 * 107.86796 * 359.72309 * 4 3 2 9 9 C 1.37649 * 125.67789 * 179.83809 * 2 1 3 10 10 C 1.46679 * 126.23501 * 359.96405 * 9 2 1 11 11 O 1.21688 * 120.00022 * 4.49078 * 10 9 2 12 12 N 1.34779 * 119.99892 * 184.48716 * 10 9 2 13 13 C 1.46506 * 119.99537 * 174.47728 * 12 10 9 14 14 H 1.08999 * 112.85339 * 336.20153 * 13 12 10 15 15 C 1.53956 * 113.53397 * 107.50829 * 13 12 10 16 16 C 1.53781 * 87.01716 * 89.18678 * 15 13 12 17 17 H 1.09005 * 113.61763 * 270.76549 * 16 15 13 18 18 C 1.50704 * 113.61500 * 139.95295 * 16 15 13 19 19 C 1.37922 * 119.92822 * 140.86282 * 18 16 15 20 20 C 1.39649 * 119.84822 * 179.97438 * 19 18 16 21 21 C 1.43200 * 120.15104 * 180.02562 * 20 19 18 22 22 N 9.93062 * 167.36524 * 298.85938 * 10 1 2 23 23 C 1.39610 * 119.70057 * 0.27993 * 20 19 18 24 24 C 1.37974 * 119.84191 * 359.42117 * 23 20 19 25 25 C 1.38338 * 120.15256 * 0.60062 * 24 23 20 26 26 C 1.53777 * 113.61165 * 205.00256 * 13 12 10 27 27 H 1.08998 * 109.47606 * 272.14085 * 1 2 3 28 28 H 1.09005 * 109.47193 * 32.14641 * 1 2 3 29 29 H 1.09001 * 109.46674 * 152.13932 * 1 2 3 30 30 H 1.07990 * 125.56618 * 359.97438 * 3 2 1 31 31 H 1.09006 * 109.47520 * 125.03649 * 5 4 3 32 32 H 0.96697 * 114.00738 * 180.02562 * 6 5 4 33 33 H 1.48504 * 110.00420 * 178.68112 * 7 5 4 34 34 H 1.48499 * 109.99998 * 300.00036 * 7 5 4 35 35 H 1.07997 * 126.45980 * 180.02562 * 8 4 3 36 36 H 0.96992 * 120.00456 * 354.48404 * 12 10 9 37 37 H 1.08997 * 113.66489 * 334.66356 * 15 13 12 38 38 H 1.08993 * 113.61355 * 203.70467 * 15 13 12 39 39 H 1.08000 * 120.07719 * 0.02562 * 19 18 16 40 40 H 1.08002 * 120.07969 * 179.72288 * 23 20 19 41 41 H 1.08003 * 119.92236 * 180.32251 * 24 23 20 42 42 H 1.08000 * 119.84856 * 179.69580 * 25 24 23 43 43 H 1.09001 * 113.61234 * 156.33974 * 26 13 12 44 44 H 1.08997 * 113.61607 * 25.43819 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2554 1.1010 0.0000 4 6 3.5521 0.7093 -0.0068 5 6 4.7536 1.6189 -0.0156 6 8 5.4695 1.4506 -1.2409 7 14 4.1936 3.3890 0.1383 8 6 3.5780 -0.6888 -0.0048 9 6 2.2678 -1.1181 0.0032 10 6 1.8124 -2.5124 0.0078 11 8 0.6247 -2.7649 -0.0733 12 7 2.7094 -3.5140 0.1019 13 6 2.2498 -4.8993 0.2285 14 1 1.2435 -4.9755 0.6405 15 6 2.4629 -5.7366 -1.0458 16 6 3.8502 -6.0906 -0.4845 17 1 4.6307 -5.3865 -0.7730 18 6 4.2449 -7.5271 -0.7120 19 6 5.5468 -7.8387 -1.0438 20 6 5.9109 -9.1705 -1.2537 21 6 7.2609 -9.5014 -1.5979 22 7 8.3317 -9.7638 -1.8719 23 6 4.9515 -10.1773 -1.1317 24 6 3.6541 -9.8520 -0.7933 25 6 3.3002 -8.5306 -0.5871 26 6 3.2679 -5.8258 0.9140 27 1 -0.3634 0.0384 1.0269 28 1 -0.3634 0.8701 -0.5468 29 1 -0.3633 -0.9086 -0.4803 30 1 1.9082 2.1235 -0.0004 31 1 5.4044 1.3695 0.8225 32 1 6.2573 2.0063 -1.3157 33 1 5.3708 4.2939 0.1628 34 1 3.3057 3.7415 -0.9986 35 1 4.4583 -1.3144 -0.0084 36 1 3.6591 -3.3176 0.0859 37 1 2.5000 -5.1422 -1.9587 38 1 1.7920 -6.5921 -1.1233 39 1 6.2833 -7.0547 -1.1402 40 1 5.2253 -11.2089 -1.2971 41 1 2.9120 -10.6304 -0.6934 42 1 2.2821 -8.2811 -0.3271 43 1 2.8174 -6.7058 1.3731 44 1 3.9538 -5.3034 1.5808 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14329782_10803934.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:41:56 Heat of formation + Delta-G solvation = 71.923319 kcal Electronic energy + Delta-G solvation = -27420.323670 eV Core-core repulsion = 23499.267545 eV Total energy + Delta-G solvation = -3921.056126 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.54706 -41.57839 -40.23352 -38.90749 -37.77569 -37.29136 -34.92113 -33.84265 -32.39121 -32.23952 -30.69664 -28.40460 -26.86794 -26.50853 -25.65009 -25.02075 -23.84560 -22.91799 -21.23891 -20.86823 -20.29587 -19.10114 -18.66808 -18.38969 -17.50133 -17.25185 -16.95626 -16.66086 -16.59959 -16.01962 -15.78114 -15.55860 -15.24475 -15.07464 -15.03190 -14.91154 -14.58871 -14.39015 -14.14409 -14.02332 -13.99906 -13.70594 -13.62644 -13.58519 -13.26618 -13.17960 -13.03032 -12.95622 -12.66511 -12.48058 -11.96238 -11.89031 -11.84483 -11.39218 -11.01578 -10.37862 -10.18758 -10.06240 -9.82802 -9.66810 -9.23541 -4.96501 -0.29759 0.18079 0.45017 1.30355 1.52624 1.53837 1.62340 1.70667 1.91735 1.97838 2.26259 2.34893 2.77685 2.84245 3.29512 3.46487 3.51997 3.56290 3.68344 3.72588 3.81240 3.88278 3.93186 3.94183 3.98308 4.10843 4.11595 4.27817 4.32727 4.36986 4.51661 4.56066 4.57610 4.61000 4.65851 4.72043 4.77854 4.79358 4.85156 4.91279 4.99628 5.18292 5.20332 5.22226 5.36736 5.50638 5.67828 5.69053 5.92174 6.13030 6.42372 6.51506 6.52755 7.14936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.403 5.403 3 C 0.031 3.969 4 C -0.162 4.162 5 C -0.038 4.038 6 O -0.537 6.537 7 Si 0.677 3.323 8 C -0.111 4.111 9 C -0.056 4.056 10 C 0.596 3.404 11 O -0.544 6.544 12 N -0.703 5.703 13 C 0.123 3.877 14 H 0.107 0.893 15 C -0.144 4.144 16 C -0.076 4.076 17 H 0.101 0.899 18 C -0.071 4.071 19 C -0.067 4.067 20 C -0.025 4.025 21 C 0.250 3.750 22 N -0.412 5.412 23 C -0.074 4.074 24 C -0.115 4.115 25 C -0.087 4.087 26 C -0.135 4.135 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.108 0.892 30 H 0.173 0.827 31 H 0.072 0.928 32 H 0.377 0.623 33 H -0.262 1.262 34 H -0.255 1.255 35 H 0.144 0.856 36 H 0.404 0.596 37 H 0.077 0.923 38 H 0.097 0.903 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.135 0.865 42 H 0.132 0.868 43 H 0.101 0.899 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.594 2.171 4.355 6.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.075 5.075 3 C -0.106 4.106 4 C -0.168 4.168 5 C -0.148 4.148 6 O -0.344 6.344 7 Si 0.578 3.422 8 C -0.137 4.137 9 C -0.169 4.169 10 C 0.385 3.615 11 O -0.423 6.423 12 N -0.354 5.354 13 C 0.018 3.982 14 H 0.125 0.875 15 C -0.182 4.182 16 C -0.094 4.094 17 H 0.119 0.881 18 C -0.071 4.071 19 C -0.088 4.088 20 C -0.028 4.028 21 C -0.065 4.065 22 N -0.087 5.087 23 C -0.094 4.094 24 C -0.133 4.133 25 C -0.105 4.105 26 C -0.173 4.173 27 H 0.098 0.902 28 H 0.104 0.896 29 H 0.126 0.874 30 H 0.190 0.810 31 H 0.090 0.910 32 H 0.224 0.776 33 H -0.187 1.187 34 H -0.180 1.180 35 H 0.162 0.838 36 H 0.240 0.760 37 H 0.096 0.904 38 H 0.116 0.884 39 H 0.150 0.850 40 H 0.151 0.849 41 H 0.153 0.847 42 H 0.150 0.850 43 H 0.120 0.880 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.695 1.915 3.415 5.383 hybrid contribution 1.222 0.090 -0.669 1.396 sum -2.473 2.004 2.746 4.204 Atomic orbital electron populations 1.22408 0.75432 1.05923 1.04251 1.43770 1.07032 1.04606 1.52121 1.21804 0.89986 0.91748 1.07016 1.18584 0.92133 0.93823 1.12260 1.24002 0.93743 1.08602 0.88491 1.86609 1.43052 1.66390 1.38342 0.95370 0.83697 0.74334 0.88791 1.21163 0.94282 0.94597 1.03697 1.19944 0.90224 0.87554 1.19144 1.16923 0.85498 0.83433 0.75657 1.90791 1.16265 1.84751 1.50493 1.45289 1.09764 1.05417 1.74921 1.21882 0.99565 0.79737 0.97016 0.87474 1.23616 0.95795 1.00319 0.98512 1.21648 0.97823 0.92625 0.97309 0.88079 1.19596 0.92823 0.95272 0.99449 1.21087 0.96295 0.94452 0.96918 1.15987 0.86147 0.94494 1.06222 1.25745 0.92856 0.94022 0.93922 1.81309 1.11585 1.07223 1.08605 1.21239 0.92502 0.98826 0.96874 1.21130 0.95951 0.96755 0.99501 1.21300 0.99722 0.92324 0.97196 1.23453 0.98134 0.99838 0.95903 0.90162 0.89631 0.87367 0.80959 0.90955 0.77574 1.18687 1.17990 0.83798 0.76023 0.90423 0.88442 0.85006 0.84923 0.84689 0.85007 0.88033 0.90145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.05 10.69 59.84 0.64 0.59 16 2 N -0.40 -0.47 3.16 -120.23 -0.38 -0.85 16 3 C 0.03 0.01 9.94 -16.91 -0.17 -0.16 16 4 C -0.16 -0.16 5.46 -105.02 -0.57 -0.73 16 5 C -0.04 0.01 3.01 36.00 0.11 0.12 16 6 O -0.54 -0.57 12.85 -35.23 -0.45 -1.02 16 7 Si 0.68 -0.93 30.60 -169.99 -5.20 -6.13 16 8 C -0.11 -0.10 10.29 -39.12 -0.40 -0.50 16 9 C -0.06 -0.10 6.89 -81.98 -0.56 -0.66 16 10 C 0.60 1.12 7.77 -12.85 -0.10 1.02 16 11 O -0.54 -2.50 14.25 5.20 0.07 -2.42 16 12 N -0.70 0.86 5.24 -54.23 -0.28 0.58 16 13 C 0.12 -0.25 4.30 -67.02 -0.29 -0.54 16 14 H 0.11 -0.07 7.53 -51.93 -0.39 -0.46 16 15 C -0.14 0.38 7.27 -25.83 -0.19 0.19 16 16 C -0.08 0.27 3.85 -90.96 -0.35 -0.08 16 17 H 0.10 -0.41 8.08 -51.93 -0.42 -0.83 16 18 C -0.07 0.18 5.28 -104.68 -0.55 -0.37 16 19 C -0.07 0.11 9.41 -39.17 -0.37 -0.26 16 20 C -0.03 0.01 5.73 -106.93 -0.61 -0.60 16 21 C 0.25 0.54 15.33 -22.47 -0.34 0.19 16 22 N -0.41 -2.08 18.54 41.84 0.78 -1.30 16 23 C -0.07 0.13 9.76 -39.17 -0.38 -0.25 16 24 C -0.12 0.33 10.03 -39.64 -0.40 -0.06 16 25 C -0.09 0.27 8.53 -39.49 -0.34 -0.07 16 26 C -0.14 0.52 7.29 -25.92 -0.19 0.33 16 27 H 0.08 -0.14 8.14 -51.93 -0.42 -0.57 16 28 H 0.09 -0.24 8.14 -51.93 -0.42 -0.67 16 29 H 0.11 0.10 6.12 -51.93 -0.32 -0.22 16 30 H 0.17 -0.39 6.21 -52.49 -0.33 -0.72 16 31 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 32 H 0.38 -1.08 8.74 45.56 0.40 -0.68 16 33 H -0.26 -0.23 7.11 56.52 0.40 0.18 16 34 H -0.26 -0.42 7.11 56.52 0.40 -0.02 16 35 H 0.14 -0.17 7.45 -52.49 -0.39 -0.56 16 36 H 0.40 -1.30 7.60 -40.82 -0.31 -1.61 16 37 H 0.08 -0.10 8.14 -51.93 -0.42 -0.52 16 38 H 0.10 -0.33 6.39 -51.93 -0.33 -0.66 16 39 H 0.13 -0.36 8.05 -52.49 -0.42 -0.78 16 40 H 0.13 -0.38 8.06 -52.49 -0.42 -0.81 16 41 H 0.14 -0.63 8.06 -52.48 -0.42 -1.05 16 42 H 0.13 -0.62 6.71 -52.49 -0.35 -0.97 16 43 H 0.10 -0.44 7.63 -51.93 -0.40 -0.83 16 44 H 0.08 -0.32 8.14 -51.93 -0.42 -0.74 16 LS Contribution 376.85 15.07 5.68 5.68 Total: 0.00 -10.11 376.85 -10.27 -20.38 By element: Atomic # 1 Polarization: -7.65 SS G_CDS: -5.41 Total: -13.06 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -5.07 Total: -1.85 kcal Atomic # 7 Polarization: -1.68 SS G_CDS: 0.11 Total: -1.57 kcal Atomic # 8 Polarization: -3.07 SS G_CDS: -0.38 Total: -3.45 kcal Atomic # 14 Polarization: -0.93 SS G_CDS: -5.20 Total: -6.13 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -10.11 -10.27 -20.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14329782_10803934.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.299 kcal (2) G-P(sol) polarization free energy of solvation -10.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds