Wall clock time and date at job start Sun Mar 7 2021 00:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35452 * 125.56402 * 2 1 4 4 C 1.50697 * 126.06785 * 0.04515 * 3 2 1 5 5 O 1.42897 * 109.47265 * 245.28024 * 4 3 2 6 6 Si 1.86300 * 109.47356 * 125.27757 * 4 3 2 7 7 C 1.39832 * 107.86392 * 180.02562 * 3 2 1 8 8 C 1.50699 * 126.45842 * 179.97438 * 7 3 2 9 9 C 1.37873 * 107.08560 * 0.02562 * 7 3 2 10 10 C 1.46684 * 126.23109 * 180.02562 * 9 7 3 11 11 O 1.21694 * 119.99988 * 359.97438 * 10 9 7 12 12 N 1.34776 * 119.99838 * 179.97438 * 10 9 7 13 13 C 1.46491 * 120.00109 * 179.97438 * 12 10 9 14 14 H 1.09003 * 112.84780 * 23.80285 * 13 12 10 15 15 C 1.53784 * 113.61692 * 154.99749 * 13 12 10 16 16 C 1.53782 * 87.07841 * 89.11887 * 15 13 12 17 17 H 1.09001 * 113.61354 * 270.88630 * 16 15 13 18 18 C 1.50701 * 113.61391 * 140.06760 * 16 15 13 19 19 C 1.37931 * 119.92452 * 119.99312 * 18 16 15 20 20 C 1.39648 * 119.84715 * 179.97438 * 19 18 16 21 21 C 1.43193 * 120.15125 * 179.97438 * 20 19 18 22 22 N 9.93235 * 100.02624 * 194.47782 * 10 1 2 23 23 C 1.39621 * 119.69887 * 0.02562 * 20 19 18 24 24 C 1.37963 * 119.84301 * 359.97438 * 23 20 19 25 25 C 1.38341 * 120.15402 * 359.74509 * 24 23 20 26 26 C 1.53776 * 113.61702 * 252.49703 * 13 12 10 27 27 N 1.35537 * 125.56180 * 180.02562 * 2 1 3 28 28 H 1.08992 * 109.47420 * 275.07237 * 1 2 3 29 29 H 1.09001 * 109.47169 * 35.07326 * 1 2 3 30 30 H 1.09008 * 109.47164 * 155.06791 * 1 2 3 31 31 H 1.09010 * 109.47326 * 5.27950 * 4 3 2 32 32 H 0.96695 * 113.99920 * 300.00174 * 5 4 3 33 33 H 1.48493 * 110.00196 * 182.34848 * 6 4 3 34 34 H 1.48506 * 109.99948 * 303.67063 * 6 4 3 35 35 H 1.09003 * 109.47230 * 270.02158 * 8 7 3 36 36 H 1.09000 * 109.47114 * 30.01386 * 8 7 3 37 37 H 1.08998 * 109.47667 * 150.01637 * 8 7 3 38 38 H 0.96999 * 119.99894 * 359.97438 * 12 10 9 39 39 H 1.09002 * 113.61672 * 203.66545 * 15 13 12 40 40 H 1.08997 * 113.61039 * 334.48354 * 15 13 12 41 41 H 1.08003 * 120.07539 * 0.02562 * 19 18 16 42 42 H 1.07998 * 120.07475 * 179.97438 * 23 20 19 43 43 H 1.08001 * 119.92221 * 180.02562 * 24 23 20 44 44 H 1.08002 * 119.84646 * 180.25459 * 25 24 23 45 45 H 1.09007 * 113.61475 * 25.42910 * 26 13 12 46 46 H 1.09002 * 113.61799 * 156.33587 * 26 13 12 47 47 H 0.96999 * 125.68095 * 0.22383 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 1.8199 2.5320 0.0010 5 8 2.2037 3.1622 -1.2228 6 14 2.5879 3.4405 1.4348 7 6 3.6269 0.6767 -0.0006 8 6 4.8486 1.5591 -0.0014 9 6 3.6121 -0.7019 -0.0015 10 6 4.7860 -1.5815 -0.0019 11 8 5.9049 -1.1030 -0.0018 12 7 4.6253 -2.9197 -0.0023 13 6 5.7976 -3.7982 -0.0032 14 1 6.6876 -3.3167 0.4019 15 6 5.5251 -5.1898 0.5919 16 6 5.1266 -5.6316 -0.8261 17 1 4.0708 -5.4791 -1.0504 18 6 5.6075 -7.0139 -1.1852 19 6 4.6963 -7.9951 -1.5162 20 6 5.1437 -9.2753 -1.8492 21 6 4.2035 -10.2990 -2.1932 22 7 3.4565 -11.1130 -2.4584 23 6 6.5121 -9.5530 -1.8441 24 6 7.4124 -8.5621 -1.5111 25 6 6.9626 -7.2944 -1.1878 26 6 6.0358 -4.5062 -1.3473 27 7 2.2953 -1.1026 -0.0005 28 1 -0.3634 0.0909 1.0235 29 1 -0.3633 0.8411 -0.5905 30 1 -0.3634 -0.9320 -0.4332 31 1 0.7342 2.5544 0.0962 32 1 3.1586 3.1787 -1.3740 33 1 2.0837 4.8365 1.4802 34 1 2.2692 2.7436 2.7069 35 1 5.1424 1.7720 -1.0292 36 1 4.6223 2.4933 0.5127 37 1 5.6646 1.0505 0.5119 38 1 3.7334 -3.3011 -0.0020 39 1 6.4192 -5.6863 0.9688 40 1 4.6999 -5.2061 1.3039 41 1 3.6392 -7.7735 -1.5185 42 1 6.8648 -10.5411 -2.1002 43 1 8.4711 -8.7753 -1.5071 44 1 7.6720 -6.5213 -0.9319 45 1 5.6219 -3.9711 -2.2021 46 1 7.0696 -4.8159 -1.5006 47 1 1.9833 -2.0210 -0.0040 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14329782_12297754.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:42:06 Heat of formation + Delta-G solvation = 52.554772 kcal Electronic energy + Delta-G solvation = -29618.508836 eV Core-core repulsion = 25541.075208 eV Total energy + Delta-G solvation = -4077.433628 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 352.157 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.73342 -41.67038 -40.31870 -38.99345 -37.68948 -37.35309 -34.88301 -33.78195 -33.03013 -32.45074 -32.00853 -29.32773 -27.78985 -26.95634 -26.69256 -25.94385 -24.96113 -23.14097 -22.68692 -21.06590 -20.89901 -20.11321 -19.47562 -19.11146 -17.63815 -17.55150 -17.23180 -16.83379 -16.72209 -16.46493 -16.09952 -15.81139 -15.42180 -15.26971 -15.11419 -15.10856 -14.92641 -14.57997 -14.34858 -14.21395 -14.16281 -13.97800 -13.95892 -13.76398 -13.74345 -13.68710 -13.33640 -13.23548 -13.09717 -13.01163 -12.74273 -12.66064 -12.30345 -12.04040 -11.92360 -11.88201 -11.46577 -11.00051 -10.48569 -10.27398 -10.12491 -9.89486 -9.58066 -9.02839 -4.83766 -0.35802 0.11617 0.35638 1.25539 1.59546 1.64745 1.81635 1.85578 1.86909 1.95129 2.12264 2.29983 2.71491 2.78079 3.21075 3.43322 3.48499 3.61942 3.62881 3.69430 3.71058 3.74761 3.86866 3.90675 3.95995 4.00742 4.04689 4.26038 4.29412 4.36391 4.43118 4.44165 4.49740 4.49780 4.54383 4.64261 4.71105 4.76127 4.77768 4.81742 4.87196 4.90007 4.96180 5.09738 5.11956 5.16443 5.27538 5.32742 5.43604 5.62799 5.65956 5.86695 6.20938 6.37949 6.45710 6.69071 7.08400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.080 3.920 3 C -0.207 4.207 4 C -0.028 4.028 5 O -0.542 6.542 6 Si 0.668 3.332 7 C -0.058 4.058 8 C -0.095 4.095 9 C -0.061 4.061 10 C 0.595 3.405 11 O -0.519 6.519 12 N -0.717 5.717 13 C 0.122 3.878 14 H 0.111 0.889 15 C -0.136 4.136 16 C -0.075 4.075 17 H 0.098 0.902 18 C -0.072 4.072 19 C -0.068 4.068 20 C -0.025 4.025 21 C 0.250 3.750 22 N -0.412 5.412 23 C -0.073 4.073 24 C -0.115 4.115 25 C -0.086 4.086 26 C -0.144 4.144 27 N -0.537 5.537 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.108 0.892 32 H 0.376 0.624 33 H -0.253 1.253 34 H -0.257 1.257 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.091 0.909 38 H 0.394 0.606 39 H 0.102 0.898 40 H 0.077 0.923 41 H 0.131 0.869 42 H 0.133 0.867 43 H 0.136 0.864 44 H 0.133 0.867 45 H 0.077 0.923 46 H 0.099 0.901 47 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.220 0.227 1.653 2.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.038 4.038 3 C -0.213 4.213 4 C -0.140 4.140 5 O -0.347 6.347 6 Si 0.570 3.430 7 C -0.067 4.067 8 C -0.151 4.151 9 C -0.172 4.172 10 C 0.384 3.616 11 O -0.394 6.394 12 N -0.368 5.368 13 C 0.016 3.984 14 H 0.128 0.872 15 C -0.174 4.174 16 C -0.093 4.093 17 H 0.116 0.884 18 C -0.072 4.072 19 C -0.088 4.088 20 C -0.028 4.028 21 C -0.066 4.066 22 N -0.087 5.087 23 C -0.094 4.094 24 C -0.133 4.133 25 C -0.105 4.105 26 C -0.182 4.182 27 N -0.134 5.134 28 H 0.098 0.902 29 H 0.107 0.893 30 H 0.089 0.911 31 H 0.126 0.874 32 H 0.223 0.777 33 H -0.178 1.178 34 H -0.182 1.182 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.110 0.890 38 H 0.227 0.773 39 H 0.120 0.880 40 H 0.096 0.904 41 H 0.149 0.851 42 H 0.151 0.849 43 H 0.154 0.846 44 H 0.151 0.849 45 H 0.095 0.905 46 H 0.117 0.883 47 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 1.099 -0.358 1.956 2.272 hybrid contribution -0.998 -1.092 -0.179 1.490 sum 0.101 -1.450 1.777 2.296 Atomic orbital electron populations 1.20517 0.87441 1.04040 1.03512 1.20304 0.93589 0.85566 1.04388 1.19517 0.92590 0.95121 1.14099 1.24271 1.02674 0.90957 0.96103 1.86484 1.28659 1.79813 1.39754 0.94589 0.92471 0.79286 0.76702 1.19730 0.94597 0.91221 1.01147 1.20522 0.94677 0.96948 1.02912 1.19985 0.82727 0.93901 1.20609 1.16973 0.87553 0.81102 0.75974 1.90839 1.24053 1.74825 1.49711 1.45544 1.09131 1.05654 1.76482 1.21850 0.89681 0.89818 0.97019 0.87151 1.23454 1.03224 0.94882 0.95818 1.21624 1.00147 0.90612 0.96966 0.88400 1.19576 0.93192 0.94932 0.99541 1.21065 1.00136 0.90820 0.96806 1.15984 0.90532 0.90357 1.05947 1.25750 0.93501 0.93390 0.93961 1.81321 1.09139 1.09589 1.08605 1.21251 0.90906 1.00210 0.97010 1.21140 1.00220 0.92670 0.99227 1.21310 0.95184 0.96951 0.97060 1.23590 1.00778 0.95847 0.97988 1.41819 1.05428 1.08299 1.57858 0.90190 0.89316 0.91112 0.87411 0.77696 1.17774 1.18175 0.90256 0.91433 0.89030 0.77276 0.87978 0.90439 0.85128 0.84870 0.84615 0.84939 0.90476 0.88295 0.74788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.27 9.90 36.01 0.36 0.63 16 2 C 0.08 -0.04 7.13 -81.95 -0.58 -0.63 16 3 C -0.21 -0.14 4.66 -105.02 -0.49 -0.63 16 4 C -0.03 -0.01 2.86 36.00 0.10 0.09 16 5 O -0.54 -0.65 12.88 -35.23 -0.45 -1.10 16 6 Si 0.67 0.23 29.30 -169.99 -4.98 -4.75 16 7 C -0.06 -0.05 5.82 -104.16 -0.61 -0.66 16 8 C -0.09 0.06 8.65 36.01 0.31 0.37 16 9 C -0.06 -0.02 7.06 -81.98 -0.58 -0.60 16 10 C 0.60 0.45 7.79 -12.85 -0.10 0.35 16 11 O -0.52 -1.95 14.40 5.19 0.07 -1.88 16 12 N -0.72 1.78 5.26 -54.33 -0.29 1.50 16 13 C 0.12 -0.34 4.32 -67.12 -0.29 -0.63 16 14 H 0.11 -0.14 7.46 -51.93 -0.39 -0.53 16 15 C -0.14 0.60 7.29 -25.92 -0.19 0.41 16 16 C -0.08 0.32 3.85 -90.96 -0.35 -0.03 16 17 H 0.10 -0.49 8.09 -51.93 -0.42 -0.91 16 18 C -0.07 0.23 5.28 -104.68 -0.55 -0.32 16 19 C -0.07 0.15 9.41 -39.17 -0.37 -0.22 16 20 C -0.02 0.03 5.73 -106.93 -0.61 -0.59 16 21 C 0.25 0.42 15.33 -22.47 -0.34 0.07 16 22 N -0.41 -1.90 18.54 41.84 0.78 -1.12 16 23 C -0.07 0.16 9.76 -39.17 -0.38 -0.22 16 24 C -0.11 0.38 10.03 -39.64 -0.40 -0.02 16 25 C -0.09 0.31 8.62 -39.49 -0.34 -0.03 16 26 C -0.14 0.50 7.25 -25.92 -0.19 0.31 16 27 N -0.54 0.98 5.99 -5.69 -0.03 0.95 16 28 H 0.08 -0.27 8.14 -51.93 -0.42 -0.69 16 29 H 0.09 -0.22 7.43 -51.93 -0.39 -0.60 16 30 H 0.07 -0.29 8.14 -51.92 -0.42 -0.71 16 31 H 0.11 0.02 6.77 -51.92 -0.35 -0.34 16 32 H 0.38 -0.74 7.85 45.56 0.36 -0.39 16 33 H -0.25 -0.77 7.11 56.52 0.40 -0.37 16 34 H -0.26 -0.79 7.11 56.52 0.40 -0.38 16 35 H 0.08 -0.12 8.14 -51.93 -0.42 -0.54 16 36 H 0.07 -0.17 4.33 -51.93 -0.22 -0.40 16 37 H 0.09 0.08 6.48 -51.93 -0.34 -0.26 16 38 H 0.39 -1.95 7.83 -40.82 -0.32 -2.27 16 39 H 0.10 -0.48 7.73 -51.93 -0.40 -0.88 16 40 H 0.08 -0.35 8.14 -51.93 -0.42 -0.77 16 41 H 0.13 -0.44 8.05 -52.48 -0.42 -0.86 16 42 H 0.13 -0.44 8.06 -52.49 -0.42 -0.86 16 43 H 0.14 -0.69 8.06 -52.49 -0.42 -1.11 16 44 H 0.13 -0.68 6.63 -52.49 -0.35 -1.03 16 45 H 0.08 -0.17 8.14 -51.92 -0.42 -0.60 16 46 H 0.10 -0.40 6.30 -51.93 -0.33 -0.73 16 47 H 0.41 -2.08 8.19 -40.82 -0.33 -2.41 16 LS Contribution 391.29 15.07 5.90 5.90 Total: 0.00 -9.84 391.29 -10.67 -20.50 By element: Atomic # 1 Polarization: -11.60 SS G_CDS: -6.06 Total: -17.66 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -5.60 Total: -2.34 kcal Atomic # 7 Polarization: 0.87 SS G_CDS: 0.46 Total: 1.33 kcal Atomic # 8 Polarization: -2.60 SS G_CDS: -0.38 Total: -2.98 kcal Atomic # 14 Polarization: 0.23 SS G_CDS: -4.98 Total: -4.75 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -9.84 -10.67 -20.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14329782_12297754.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.060 kcal (2) G-P(sol) polarization free energy of solvation -9.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds