Wall clock time and date at job start Sun Mar 7 2021 00:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39609 * 120.14920 * 265.28020 * 3 2 1 5 5 C 1.37974 * 119.84414 * 179.97438 * 4 3 2 6 6 C 1.38345 * 120.15009 * 0.02562 * 5 4 3 7 7 C 1.38378 * 120.30569 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.92226 * 179.97438 * 7 6 5 9 9 H 1.08998 * 112.84924 * 170.33641 * 8 7 6 10 10 C 1.53775 * 113.61254 * 301.52537 * 8 7 6 11 11 C 1.53783 * 87.08038 * 139.98480 * 10 8 7 12 12 H 1.09000 * 113.61534 * 220.02719 * 11 10 8 13 13 N 1.46498 * 113.61795 * 89.11298 * 11 10 8 14 14 C 1.34776 * 119.99715 * 154.99924 * 13 11 10 15 15 O 1.21277 * 120.00500 * 0.02562 * 14 13 11 16 16 C 1.50700 * 119.99625 * 180.02562 * 14 13 11 17 17 C 1.50697 * 109.47256 * 180.02562 * 16 14 13 18 18 C 1.38237 * 119.99804 * 269.72395 * 17 16 14 19 19 C 1.38233 * 120.00408 * 179.80797 * 18 17 16 20 20 C 1.38241 * 119.99626 * 0.42246 * 19 18 17 21 21 C 1.50693 * 119.99950 * 179.79226 * 20 19 18 22 22 O 1.42902 * 109.47378 * 120.02250 * 21 20 19 23 23 Si 1.86297 * 109.47479 * 0.02562 * 21 20 19 24 24 C 1.38234 * 120.00094 * 359.80737 * 20 19 18 25 25 C 1.38230 * 120.00464 * 89.99550 * 17 16 14 26 26 C 1.53776 * 113.61506 * 39.13834 * 8 7 6 27 27 C 1.37928 * 120.15554 * 359.97438 * 7 6 5 28 28 H 1.07994 * 120.08122 * 359.97438 * 4 3 2 29 29 H 1.07998 * 119.92213 * 180.27626 * 5 4 3 30 30 H 1.08006 * 119.84385 * 180.02562 * 6 5 4 31 31 H 1.08999 * 113.61946 * 254.52676 * 10 8 7 32 32 H 1.09004 * 113.61523 * 25.35590 * 10 8 7 33 33 H 0.97000 * 120.00164 * 335.00918 * 13 11 10 34 34 H 1.09002 * 109.47298 * 300.00364 * 16 14 13 35 35 H 1.08999 * 109.47237 * 60.00092 * 16 14 13 36 36 H 1.08001 * 120.00199 * 0.02562 * 18 17 16 37 37 H 1.08003 * 120.00834 * 180.21334 * 19 18 17 38 38 H 1.08999 * 109.46939 * 240.02024 * 21 20 19 39 39 H 0.96709 * 113.99586 * 299.99634 * 22 21 20 40 40 H 1.48500 * 110.00486 * 180.02562 * 23 21 20 41 41 H 1.48511 * 109.99875 * 301.32120 * 23 21 20 42 42 H 1.07995 * 119.99953 * 179.97438 * 24 20 19 43 43 H 1.08000 * 120.00160 * 359.97438 * 25 17 16 44 44 H 1.09001 * 113.61435 * 334.56101 * 26 8 7 45 45 H 1.08994 * 113.61766 * 105.46765 * 26 8 7 46 46 H 1.07991 * 120.07970 * 180.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2691 0.1003 1.2031 5 6 4.6488 0.0998 1.1959 6 6 5.3374 0.0013 0.0000 7 6 4.6487 -0.0977 -1.1962 8 6 5.4074 -0.2039 -2.4939 9 1 4.7651 -0.4434 -3.3414 10 6 6.3531 0.9806 -2.7533 11 6 7.3628 -0.0455 -3.2941 12 1 8.3926 0.1591 -3.0013 13 7 7.2194 -0.3107 -4.7277 14 6 8.2740 -0.7548 -5.4396 15 8 9.3417 -0.9355 -4.8934 16 6 8.1266 -1.0270 -6.9145 17 6 9.4413 -1.5109 -7.4699 18 6 10.3564 -0.6033 -7.9698 19 6 11.5640 -1.0466 -8.4757 20 6 11.8530 -2.3984 -8.4896 21 6 13.1675 -2.8822 -9.0454 22 8 13.8877 -3.5794 -8.0268 23 14 14.1702 -1.4239 -9.6272 24 6 10.9360 -3.3064 -7.9941 25 6 9.7299 -2.8626 -7.4847 26 6 6.6625 -1.0878 -2.4031 27 6 3.2694 -0.0995 -1.2035 28 1 2.7329 0.1776 2.1373 29 1 5.1925 0.1723 2.1262 30 1 6.4174 0.0010 0.0000 31 1 5.9872 1.6739 -3.5106 32 1 6.6835 1.4828 -1.8440 33 1 6.3654 -0.1664 -5.1646 34 1 7.3643 -1.7907 -7.0687 35 1 7.8312 -0.1106 -7.4254 36 1 10.1293 0.4526 -7.9620 37 1 12.2804 -0.3373 -8.8631 38 1 12.9824 -3.5537 -9.8838 39 1 14.0876 -3.0416 -7.2483 40 1 15.4689 -1.8877 -10.1781 41 1 13.4187 -0.6720 -10.6641 42 1 11.1616 -4.3625 -8.0054 43 1 9.0134 -3.5720 -7.0978 44 1 7.0789 -1.1530 -1.3978 45 1 6.5460 -2.0618 -2.8781 46 1 2.7332 -0.1773 -2.1376 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14329782_12335836.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:42:17 Heat of formation + Delta-G solvation = 42.524322 kcal Electronic energy + Delta-G solvation = -28003.121224 eV Core-core repulsion = 24017.990033 eV Total energy + Delta-G solvation = -3985.131191 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 349.146 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.59043 -40.84291 -40.09308 -38.94537 -37.62454 -37.42066 -34.54580 -33.92457 -32.22427 -31.95301 -31.88148 -29.65323 -26.60185 -26.42217 -25.52086 -24.76319 -23.78871 -22.84330 -22.36828 -21.32233 -20.64207 -18.96742 -18.44141 -18.04895 -17.26848 -17.25616 -16.85908 -16.67655 -16.43657 -16.19794 -15.97014 -15.81585 -15.47857 -15.16212 -15.13460 -14.82465 -14.67560 -14.46293 -14.41215 -14.15807 -14.04030 -13.98095 -13.77110 -13.39142 -13.28916 -13.10595 -12.89338 -12.78596 -12.66970 -12.46943 -12.24729 -11.96229 -11.72205 -11.68055 -11.61723 -11.16061 -10.92802 -10.44027 -9.98997 -9.89287 -9.85400 -9.63860 -9.57930 -5.00147 -0.17970 0.26428 0.39111 0.47668 1.31399 1.56929 1.61229 1.69297 1.91758 1.93442 2.20926 2.82011 2.83807 2.87077 3.50930 3.55885 3.65433 3.75434 3.79780 3.82166 3.93980 3.96208 4.04848 4.07312 4.10574 4.20956 4.23056 4.34626 4.39078 4.48057 4.50338 4.54074 4.65320 4.74621 4.76317 4.81092 4.87874 4.95749 5.03988 5.06145 5.09856 5.11163 5.13062 5.26945 5.36573 5.40339 5.44376 5.55829 5.58381 5.61574 5.75096 5.91263 6.04274 6.40338 6.62693 6.72680 7.34544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C 0.276 3.724 3 C -0.046 4.046 4 C -0.077 4.077 5 C -0.117 4.117 6 C -0.084 4.084 7 C -0.074 4.074 8 C -0.066 4.066 9 H 0.113 0.887 10 C -0.125 4.125 11 C 0.113 3.887 12 H 0.083 0.917 13 N -0.703 5.703 14 C 0.516 3.484 15 O -0.576 6.576 16 C -0.099 4.099 17 C -0.071 4.071 18 C -0.110 4.110 19 C -0.124 4.124 20 C -0.129 4.129 21 C -0.077 4.077 22 O -0.558 6.558 23 Si 0.775 3.225 24 C -0.109 4.109 25 C -0.116 4.116 26 C -0.143 4.143 27 C -0.068 4.068 28 H 0.139 0.861 29 H 0.154 0.846 30 H 0.148 0.852 31 H 0.087 0.913 32 H 0.104 0.896 33 H 0.417 0.583 34 H 0.127 0.873 35 H 0.132 0.868 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.105 0.895 39 H 0.394 0.606 40 H -0.299 1.299 41 H -0.282 1.282 42 H 0.121 0.879 43 H 0.131 0.869 44 H 0.100 0.900 45 H 0.066 0.934 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.958 4.110 0.731 4.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.150 5.150 2 C -0.038 4.038 3 C -0.050 4.050 4 C -0.097 4.097 5 C -0.135 4.135 6 C -0.102 4.102 7 C -0.074 4.074 8 C -0.084 4.084 9 H 0.131 0.869 10 C -0.163 4.163 11 C 0.008 3.992 12 H 0.102 0.898 13 N -0.355 5.355 14 C 0.304 3.696 15 O -0.455 6.455 16 C -0.139 4.139 17 C -0.072 4.072 18 C -0.128 4.128 19 C -0.141 4.141 20 C -0.129 4.129 21 C -0.187 4.187 22 O -0.366 6.366 23 Si 0.681 3.319 24 C -0.127 4.127 25 C -0.134 4.134 26 C -0.181 4.181 27 C -0.088 4.088 28 H 0.157 0.843 29 H 0.172 0.828 30 H 0.166 0.834 31 H 0.105 0.895 32 H 0.122 0.878 33 H 0.254 0.746 34 H 0.145 0.855 35 H 0.150 0.850 36 H 0.160 0.840 37 H 0.158 0.842 38 H 0.122 0.878 39 H 0.243 0.757 40 H -0.227 1.227 41 H -0.209 1.209 42 H 0.139 0.861 43 H 0.149 0.851 44 H 0.118 0.882 45 H 0.085 0.915 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.273 3.891 0.023 3.900 hybrid contribution -0.566 -0.746 -0.234 0.965 sum -0.293 3.144 -0.211 3.165 Atomic orbital electron populations 1.81319 1.13809 1.10981 1.08912 1.26171 0.93099 0.92187 0.92318 1.16108 0.82856 1.09760 0.96263 1.21406 0.95177 0.96551 0.96602 1.21381 0.93120 0.99306 0.99706 1.21589 1.01608 0.95475 0.91526 1.19717 0.92364 0.99688 0.95679 1.21611 0.94733 0.97337 0.94723 0.86927 1.23392 0.94499 0.95868 1.02517 1.21871 0.99939 0.97004 0.80432 0.89844 1.45602 1.13911 1.67226 1.08786 1.20929 0.83399 0.75640 0.89624 1.90742 1.28884 1.52789 1.73065 1.20763 0.96271 1.05993 0.90850 1.19589 0.96204 0.93359 0.98017 1.21240 0.93336 1.00403 0.97780 1.21169 0.97924 0.94559 1.00484 1.20402 0.97060 0.94086 1.01352 1.25218 0.93258 1.06172 0.94010 1.86448 1.75814 1.42815 1.31499 0.93605 0.75684 0.78238 0.84406 1.21071 0.93557 0.99815 0.98227 1.21232 0.97262 0.95777 0.99129 1.23601 0.95518 0.97981 1.01028 1.21216 0.94125 0.96794 0.96662 0.84311 0.82808 0.83388 0.89452 0.87773 0.74560 0.85481 0.84985 0.83957 0.84214 0.87787 0.75662 1.22685 1.20865 0.86096 0.85109 0.88215 0.91538 0.84138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -5.11 18.54 19.00 0.35 -4.76 16 2 C 0.28 1.18 15.33 88.33 1.35 2.54 16 3 C -0.05 0.10 5.73 -21.36 -0.12 -0.03 16 4 C -0.08 0.37 9.76 22.54 0.22 0.59 16 5 C -0.12 0.92 10.03 22.23 0.22 1.15 16 6 C -0.08 0.71 8.53 22.33 0.19 0.90 16 7 C -0.07 0.58 5.28 -19.90 -0.11 0.47 16 8 C -0.07 0.68 3.85 -11.02 -0.04 0.64 16 9 H 0.11 -1.41 8.08 -2.39 -0.02 -1.43 16 10 C -0.12 1.31 7.29 31.12 0.23 1.54 16 11 C 0.11 -0.73 4.33 45.58 0.20 -0.53 16 12 H 0.08 -0.10 7.47 -2.39 -0.02 -0.12 16 13 N -0.70 5.35 5.26 -439.75 -2.31 3.03 16 14 C 0.52 -0.85 7.82 87.66 0.69 -0.16 16 15 O -0.58 -4.97 15.64 -3.02 -0.05 -5.01 16 16 C -0.10 0.67 5.83 29.10 0.17 0.84 16 17 C -0.07 0.00 4.37 -19.87 -0.09 -0.09 16 18 C -0.11 -0.01 9.70 22.27 0.22 0.21 16 19 C -0.12 -0.11 8.67 22.27 0.19 0.08 16 20 C -0.13 -0.37 5.39 -19.87 -0.11 -0.48 16 21 C -0.08 -0.16 2.82 71.23 0.20 0.04 16 22 O -0.56 -1.88 12.77 -148.98 -1.90 -3.78 16 23 Si 0.77 -0.29 29.79 68.60 2.04 1.75 16 24 C -0.11 -0.44 9.61 22.27 0.21 -0.22 16 25 C -0.12 -0.25 9.70 22.27 0.22 -0.03 16 26 C -0.14 1.09 7.27 31.18 0.23 1.32 16 27 C -0.07 0.36 9.41 22.54 0.21 0.57 16 28 H 0.14 -0.92 8.06 -2.91 -0.02 -0.95 16 29 H 0.15 -1.82 8.06 -2.91 -0.02 -1.84 16 30 H 0.15 -1.77 6.71 -2.91 -0.02 -1.79 16 31 H 0.09 -1.02 8.14 -2.39 -0.02 -1.04 16 32 H 0.10 -1.14 7.64 -2.38 -0.02 -1.16 16 33 H 0.42 -5.78 8.70 -92.71 -0.81 -6.59 16 34 H 0.13 -1.42 8.09 -2.39 -0.02 -1.44 16 35 H 0.13 -1.60 8.08 -2.39 -0.02 -1.62 16 36 H 0.14 -0.62 8.06 -2.91 -0.02 -0.65 16 37 H 0.14 -0.43 4.88 -2.91 -0.01 -0.44 16 38 H 0.10 0.32 7.96 -2.39 -0.02 0.30 16 39 H 0.39 -1.55 8.70 -74.05 -0.64 -2.20 16 40 H -0.30 -2.04 7.11 99.48 0.71 -1.33 16 41 H -0.28 -0.97 7.11 99.48 0.71 -0.26 16 42 H 0.12 0.46 8.06 -2.91 -0.02 0.44 16 43 H 0.13 -0.11 8.06 -2.91 -0.02 -0.14 16 44 H 0.10 -0.84 6.38 -2.39 -0.02 -0.85 16 45 H 0.07 -0.35 8.14 -2.39 -0.02 -0.37 16 46 H 0.14 -1.08 8.05 -2.92 -0.02 -1.11 16 Total: 0.00 -26.03 394.24 2.04 -24.00 By element: Atomic # 1 Polarization: -24.20 SS G_CDS: -0.38 Total: -24.57 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: 4.28 Total: 9.34 kcal Atomic # 7 Polarization: 0.24 SS G_CDS: -1.96 Total: -1.72 kcal Atomic # 8 Polarization: -6.85 SS G_CDS: -1.95 Total: -8.79 kcal Atomic # 14 Polarization: -0.29 SS G_CDS: 2.04 Total: 1.75 kcal Total: -26.03 2.04 -24.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14329782_12335836.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.522 kcal (2) G-P(sol) polarization free energy of solvation -26.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds