Wall clock time and date at job start Sun Mar 7 2021 00:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13608 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 C 1.39617 * 120.15149 * 121.01544 * 3 2 1 5 5 C 1.37965 * 119.84757 * 179.97438 * 4 3 2 6 6 C 1.38335 * 120.15302 * 359.74652 * 5 4 3 7 7 C 1.38389 * 120.30108 * 0.51145 * 6 5 4 8 8 C 1.50707 * 119.92321 * 179.76174 * 7 6 5 9 9 H 1.08997 * 112.85069 * 168.52863 * 8 7 6 10 10 C 1.53782 * 113.61258 * 299.72915 * 8 7 6 11 11 C 1.53786 * 87.07909 * 140.06349 * 10 8 7 12 12 H 1.09002 * 113.61357 * 220.01470 * 11 10 8 13 13 N 1.46497 * 113.61643 * 89.19525 * 11 10 8 14 14 C 1.34775 * 120.00126 * 156.52505 * 13 11 10 15 15 O 1.21548 * 119.99830 * 0.02562 * 14 13 11 16 16 C 1.47840 * 120.00085 * 179.97438 * 14 13 11 17 17 C 1.39523 * 120.55896 * 0.02562 * 16 14 13 18 18 N 1.31700 * 120.56659 * 180.02562 * 17 16 14 19 19 C 1.31930 * 121.87603 * 359.97438 * 18 17 16 20 20 C 1.38351 * 121.08111 * 0.02562 * 19 18 17 21 21 C 1.50700 * 120.34586 * 180.02562 * 20 19 18 22 22 O 1.42900 * 109.47079 * 244.99733 * 21 20 19 23 23 Si 1.86302 * 109.47256 * 4.99665 * 21 20 19 24 24 C 1.38353 * 119.30399 * 359.73906 * 20 19 18 25 25 C 1.53781 * 87.17350 * 334.60554 * 11 10 8 26 26 C 1.37923 * 120.15337 * 359.48692 * 7 6 5 27 27 H 1.08008 * 120.07287 * 0.02562 * 4 3 2 28 28 H 1.08005 * 119.92125 * 180.02562 * 5 4 3 29 29 H 1.07998 * 119.85207 * 180.27715 * 6 5 4 30 30 H 1.08993 * 113.61979 * 25.51447 * 10 8 7 31 31 H 1.09000 * 113.61047 * 254.60729 * 10 8 7 32 32 H 0.97006 * 120.00058 * 336.53149 * 13 11 10 33 33 H 1.07996 * 119.71931 * 0.02562 * 17 16 14 34 34 H 1.08000 * 119.45554 * 179.97438 * 19 18 17 35 35 H 1.09002 * 109.47361 * 124.99615 * 21 20 19 36 36 H 0.96700 * 114.00270 * 60.00077 * 22 21 20 37 37 H 1.48500 * 109.99896 * 58.68262 * 23 21 20 38 38 H 1.48497 * 109.99922 * 180.02562 * 23 21 20 39 39 H 1.07997 * 120.85849 * 180.25536 * 24 20 19 40 40 H 1.09001 * 113.61695 * 139.93969 * 25 11 10 41 41 H 1.08997 * 113.61223 * 270.84552 * 25 11 10 42 42 H 1.08003 * 120.07868 * 180.27478 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2690 0.6230 -1.0347 5 6 4.6486 0.6203 -1.0281 6 6 5.3374 0.0074 0.0032 7 6 4.6490 -0.6160 1.0291 8 6 5.4080 -1.2857 2.1456 9 1 4.7698 -1.5626 2.9847 10 6 6.3278 -2.4225 1.6697 11 6 7.3576 -1.9107 2.6909 12 1 8.3836 -1.9300 2.3234 13 7 7.2174 -2.5140 4.0185 14 6 8.2719 -2.5500 4.8571 15 8 9.3391 -2.0816 4.5120 16 6 8.1302 -3.1583 6.1971 17 6 6.9105 -3.6989 6.6054 18 7 6.7840 -4.2404 7.7992 19 6 7.7912 -4.2951 8.6497 20 6 9.0328 -3.7812 8.3204 21 6 10.1719 -3.8531 9.3044 22 8 10.5450 -2.5312 9.6986 23 14 9.6370 -4.8205 10.8040 24 6 9.2192 -3.2059 7.0760 25 6 6.6842 -0.5339 2.5657 26 6 3.2697 -0.6208 1.0352 27 1 2.7324 1.1062 -1.8379 28 1 5.1921 1.1018 -1.8277 29 1 6.4174 0.0121 0.0057 30 1 6.6510 -2.3183 0.6341 31 1 5.9453 -3.4176 1.8968 32 1 6.3656 -2.8876 4.2940 33 1 6.0628 -3.6732 5.9367 34 1 7.6437 -4.7478 9.6191 35 1 11.0242 -4.3474 8.8382 36 1 9.8335 -2.0313 10.1217 37 1 9.2162 -6.1871 10.4033 38 1 10.7514 -4.8981 11.7824 39 1 10.1789 -2.8007 6.7912 40 1 6.5889 -0.0065 3.5148 41 1 7.1049 0.0876 1.7753 42 1 2.7337 -1.1038 1.8388 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14329782_13287814.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:44:10 Heat of formation + Delta-G solvation = 59.415336 kcal Electronic energy + Delta-G solvation = -26536.932532 eV Core-core repulsion = 22642.645498 eV Total energy + Delta-G solvation = -3894.287034 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.126 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.12612 -41.47691 -40.33650 -39.06432 -38.01626 -37.33068 -34.93724 -33.82538 -33.18000 -32.42444 -31.90420 -27.39274 -26.95319 -26.91730 -25.59824 -24.83138 -23.92949 -23.02677 -21.92097 -20.92429 -19.37655 -19.13426 -18.20500 -17.97161 -17.74654 -17.50035 -17.08013 -16.61280 -16.54735 -16.28399 -15.85765 -15.84859 -15.43323 -15.13701 -15.02674 -14.72604 -14.57383 -14.41466 -14.26290 -14.18254 -14.05951 -13.74269 -13.68300 -13.60064 -13.12391 -13.00141 -12.80018 -12.71247 -12.18994 -12.02603 -11.92058 -11.45934 -11.40955 -11.10312 -10.67116 -10.62898 -10.43259 -10.23290 -10.09862 -9.87012 -5.19182 -0.64839 -0.33224 -0.08620 0.14305 1.08556 1.48700 1.63563 1.67762 1.79001 1.87043 1.88576 2.56004 2.74129 2.80897 2.94411 3.22424 3.25444 3.32074 3.44949 3.48834 3.53719 3.61000 3.66646 3.67960 3.74551 3.89644 3.93054 4.02945 4.07370 4.11528 4.28566 4.36742 4.45242 4.51549 4.56098 4.62875 4.73313 4.76535 4.80021 4.82708 4.84767 4.92757 5.14621 5.18256 5.22243 5.30432 5.43278 5.65316 6.22582 6.39224 6.48663 6.55654 6.97934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C 0.250 3.750 3 C -0.025 4.025 4 C -0.073 4.073 5 C -0.115 4.115 6 C -0.087 4.087 7 C -0.072 4.072 8 C -0.075 4.075 9 H 0.101 0.899 10 C -0.135 4.135 11 C 0.119 3.881 12 H 0.108 0.892 13 N -0.708 5.708 14 C 0.569 3.431 15 O -0.525 6.525 16 C -0.189 4.189 17 C 0.140 3.860 18 N -0.477 5.477 19 C 0.130 3.870 20 C -0.179 4.179 21 C -0.064 4.064 22 O -0.535 6.535 23 Si 0.686 3.314 24 C 0.012 3.988 25 C -0.143 4.143 26 C -0.067 4.067 27 H 0.133 0.867 28 H 0.135 0.865 29 H 0.132 0.868 30 H 0.102 0.898 31 H 0.079 0.921 32 H 0.401 0.599 33 H 0.161 0.839 34 H 0.163 0.837 35 H 0.120 0.880 36 H 0.381 0.619 37 H -0.253 1.253 38 H -0.248 1.248 39 H 0.152 0.848 40 H 0.077 0.923 41 H 0.098 0.902 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.023 -0.205 0.741 1.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.086 5.086 2 C -0.066 4.066 3 C -0.028 4.028 4 C -0.094 4.094 5 C -0.133 4.133 6 C -0.105 4.105 7 C -0.072 4.072 8 C -0.094 4.094 9 H 0.119 0.881 10 C -0.173 4.173 11 C 0.014 3.986 12 H 0.126 0.874 13 N -0.360 5.360 14 C 0.355 3.645 15 O -0.401 6.401 16 C -0.194 4.194 17 C -0.019 4.019 18 N -0.185 5.185 19 C -0.026 4.026 20 C -0.181 4.181 21 C -0.176 4.176 22 O -0.341 6.341 23 Si 0.587 3.413 24 C -0.014 4.014 25 C -0.182 4.182 26 C -0.087 4.087 27 H 0.151 0.849 28 H 0.153 0.847 29 H 0.150 0.850 30 H 0.120 0.880 31 H 0.098 0.902 32 H 0.237 0.763 33 H 0.178 0.822 34 H 0.180 0.820 35 H 0.137 0.863 36 H 0.228 0.772 37 H -0.177 1.177 38 H -0.172 1.172 39 H 0.170 0.830 40 H 0.096 0.904 41 H 0.117 0.883 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.068 -1.114 0.982 1.486 hybrid contribution 0.898 0.204 -0.790 1.213 sum 0.830 -0.910 0.192 1.246 Atomic orbital electron populations 1.81317 1.12060 1.07983 1.07290 1.25742 0.92700 0.94053 0.94097 1.15985 0.84308 1.04208 0.98314 1.21248 0.94532 0.96821 0.96792 1.21133 0.93576 0.99628 0.98972 1.21306 1.00663 0.95538 0.93039 1.19575 0.92727 0.98622 0.96312 1.21674 0.95143 0.96459 0.96088 0.88092 1.23444 0.95407 0.98607 0.99838 1.21892 1.00968 0.93573 0.82199 0.87369 1.45560 1.13607 1.61238 1.15615 1.17989 0.83916 0.78674 0.83916 1.90827 1.26896 1.46163 1.76192 1.21013 0.96491 1.05539 0.96369 1.23028 0.95385 0.90720 0.92749 1.67725 1.32239 1.15417 1.03092 1.22885 0.87778 0.93541 0.98385 1.21440 0.97380 1.02158 0.97152 1.25028 0.97858 0.91497 1.03177 1.86553 1.41111 1.25320 1.81084 0.94875 0.86472 0.80864 0.79096 1.21641 0.98927 0.90393 0.90432 1.23617 0.94924 0.96682 1.02974 1.21079 0.93641 0.97089 0.96930 0.84900 0.84669 0.84998 0.87967 0.90184 0.76314 0.82188 0.81991 0.86271 0.77194 1.17725 1.17247 0.83000 0.90390 0.88330 0.84997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -1.91 18.54 41.84 0.78 -1.14 16 2 C 0.25 0.43 15.33 -22.47 -0.34 0.08 16 3 C -0.02 0.02 5.73 -106.93 -0.61 -0.59 16 4 C -0.07 0.16 9.76 -39.17 -0.38 -0.22 16 5 C -0.12 0.38 10.03 -39.65 -0.40 -0.02 16 6 C -0.09 0.31 8.62 -39.49 -0.34 -0.03 16 7 C -0.07 0.23 5.29 -104.68 -0.55 -0.32 16 8 C -0.08 0.33 3.86 -90.86 -0.35 -0.02 16 9 H 0.10 -0.53 8.09 -51.93 -0.42 -0.95 16 10 C -0.14 0.61 7.29 -25.92 -0.19 0.42 16 11 C 0.12 -0.34 4.29 -67.12 -0.29 -0.63 16 12 H 0.11 -0.12 7.50 -51.93 -0.39 -0.51 16 13 N -0.71 1.86 5.22 -53.96 -0.28 1.58 16 14 C 0.57 0.32 7.78 -12.33 -0.10 0.23 16 15 O -0.52 -2.33 16.04 5.32 0.09 -2.25 16 16 C -0.19 0.06 5.89 -104.82 -0.62 -0.56 16 17 C 0.14 -0.22 10.71 -17.13 -0.18 -0.40 16 18 N -0.48 0.05 10.35 -12.91 -0.13 -0.08 16 19 C 0.13 -0.16 9.84 -17.47 -0.17 -0.33 16 20 C -0.18 0.19 5.35 -104.54 -0.56 -0.37 16 21 C -0.06 0.10 2.82 36.01 0.10 0.20 16 22 O -0.54 0.48 12.84 -35.23 -0.45 0.03 16 23 Si 0.69 -1.76 29.83 -169.99 -5.07 -6.83 16 24 C 0.01 0.00 9.38 -38.87 -0.36 -0.36 16 25 C -0.14 0.50 7.27 -25.82 -0.19 0.31 16 26 C -0.07 0.15 9.41 -39.17 -0.37 -0.22 16 27 H 0.13 -0.43 8.06 -52.48 -0.42 -0.85 16 28 H 0.14 -0.67 8.06 -52.48 -0.42 -1.10 16 29 H 0.13 -0.67 6.64 -52.49 -0.35 -1.02 16 30 H 0.10 -0.49 7.73 -51.93 -0.40 -0.89 16 31 H 0.08 -0.38 8.14 -51.93 -0.42 -0.81 16 32 H 0.40 -2.10 6.77 -40.82 -0.28 -2.38 16 33 H 0.16 -0.77 6.42 -52.49 -0.34 -1.11 16 34 H 0.16 -0.58 4.91 -52.49 -0.26 -0.83 16 35 H 0.12 -0.15 7.96 -51.93 -0.41 -0.56 16 36 H 0.38 -1.85 8.70 45.56 0.40 -1.45 16 37 H -0.25 0.07 7.11 56.52 0.40 0.47 16 38 H -0.25 -0.21 7.11 56.52 0.40 0.19 16 39 H 0.15 0.15 7.74 -52.49 -0.41 -0.26 16 40 H 0.08 -0.19 8.14 -51.93 -0.42 -0.61 16 41 H 0.10 -0.40 6.31 -51.93 -0.33 -0.72 16 42 H 0.13 -0.45 8.05 -52.48 -0.42 -0.87 16 LS Contribution 364.91 15.07 5.50 5.50 Total: 0.00 -10.29 364.91 -9.98 -20.27 By element: Atomic # 1 Polarization: -9.76 SS G_CDS: -4.49 Total: -14.25 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -5.91 Total: -2.83 kcal Atomic # 7 Polarization: 0.00 SS G_CDS: 0.36 Total: 0.37 kcal Atomic # 8 Polarization: -1.85 SS G_CDS: -0.37 Total: -2.22 kcal Atomic # 14 Polarization: -1.76 SS G_CDS: -5.07 Total: -6.83 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -10.29 -9.98 -20.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14329782_13287814.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.683 kcal (2) G-P(sol) polarization free energy of solvation -10.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds