Wall clock time and date at job start Sun Mar 7 2021 00:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36415 * 125.80164 * 2 1 4 4 C 1.47380 * 127.19070 * 0.04022 * 3 2 1 5 5 O 1.21613 * 120.00125 * 359.70795 * 4 3 2 6 6 N 1.34777 * 119.99852 * 179.43401 * 4 3 2 7 7 C 1.46499 * 120.00195 * 180.27819 * 6 4 3 8 8 H 1.08998 * 112.84625 * 23.79619 * 7 6 4 9 9 C 1.53781 * 113.61598 * 154.99527 * 7 6 4 10 10 C 1.53781 * 87.07867 * 89.11692 * 9 7 6 11 11 H 1.09001 * 113.61491 * 270.88668 * 10 9 7 12 12 C 1.50701 * 113.61551 * 139.98153 * 10 9 7 13 13 C 1.37926 * 119.92521 * 119.99505 * 12 10 9 14 14 C 1.39649 * 119.84503 * 179.97438 * 13 12 10 15 15 C 1.43199 * 120.15212 * 180.02562 * 14 13 12 16 16 N 9.93329 * 164.31752 * 62.66997 * 4 1 2 17 17 C 1.39612 * 119.69998 * 359.97438 * 14 13 12 18 18 C 1.37966 * 119.84896 * 0.02562 * 17 14 13 19 19 C 1.38347 * 120.14754 * 359.73988 * 18 17 14 20 20 C 1.53779 * 87.08432 * 25.43214 * 10 9 7 21 21 C 1.47023 * 105.61308 * 179.77872 * 3 2 1 22 22 C 1.34171 * 105.95469 * 0.22590 * 21 3 2 23 23 C 1.50706 * 125.43682 * 179.97438 * 22 21 3 24 24 O 1.42901 * 109.46790 * 65.00196 * 23 22 21 25 25 Si 1.86294 * 109.47304 * 185.00107 * 23 22 21 26 26 O 1.33652 * 125.79986 * 180.17224 * 2 1 3 27 27 H 1.09005 * 109.47611 * 90.00024 * 1 2 3 28 28 H 1.09007 * 109.46935 * 209.99779 * 1 2 3 29 29 H 1.08996 * 109.46976 * 329.99828 * 1 2 3 30 30 H 0.97000 * 119.99736 * 0.27091 * 6 4 3 31 31 H 1.08999 * 113.61022 * 203.66432 * 9 7 6 32 32 H 1.08996 * 113.61407 * 334.57210 * 9 7 6 33 33 H 1.07994 * 120.07580 * 359.96188 * 13 12 10 34 34 H 1.08003 * 120.07718 * 179.97438 * 17 14 13 35 35 H 1.08000 * 119.92951 * 179.97438 * 18 17 14 36 36 H 1.08003 * 119.84837 * 180.27660 * 19 18 17 37 37 H 1.09000 * 113.61513 * 220.01986 * 20 10 9 38 38 H 1.08999 * 113.61644 * 89.11386 * 20 10 9 39 39 H 1.08004 * 127.02029 * 180.18904 * 21 3 2 40 40 H 1.09001 * 109.46953 * 305.00520 * 23 22 21 41 41 H 0.96696 * 114.00326 * 60.00103 * 24 23 22 42 42 H 1.48494 * 110.00250 * 180.02562 * 25 23 22 43 43 H 1.48503 * 109.99950 * 301.32000 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.1064 0.0000 4 6 1.8739 2.5157 0.0008 5 8 0.6889 2.7892 -0.0038 6 7 2.7929 3.5015 0.0122 7 6 2.3645 4.9024 0.0192 8 1 1.3596 5.0357 0.4200 9 6 3.4022 5.8610 0.6267 10 6 3.9920 5.9929 -0.7874 11 1 4.7557 5.2487 -1.0131 12 6 4.4190 7.3958 -1.1350 13 6 5.7349 7.6545 -1.4572 14 6 6.1286 8.9550 -1.7796 15 6 7.4930 9.2310 -2.1157 16 7 8.5754 9.4498 -2.3822 17 6 5.1859 9.9847 -1.7737 18 6 3.8729 9.7118 -1.4494 19 6 3.4887 8.4203 -1.1358 20 6 2.5967 5.6243 -1.3186 21 6 3.6849 0.5990 0.0055 22 6 3.5858 -0.7390 0.0031 23 6 4.7459 -1.7011 0.0064 24 8 5.4710 -1.5687 1.2306 25 14 4.1076 -3.4441 -0.1519 26 8 2.2888 -1.0840 -0.0033 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3633 -0.8901 0.5138 29 1 -0.3633 0.8899 0.5138 30 1 3.7381 3.2834 0.0159 31 1 2.9709 6.7866 1.0080 32 1 4.0755 5.3821 1.3376 33 1 6.4590 6.8533 -1.4601 34 1 5.4838 10.9928 -2.0216 35 1 3.1426 10.5074 -1.4440 36 1 2.4587 8.2113 -0.8870 37 1 2.6197 4.9543 -2.1781 38 1 1.9453 6.4851 -1.4691 39 1 4.5928 1.1839 0.0098 40 1 5.4053 -1.4780 -0.8324 41 1 4.9453 -1.7529 2.0210 42 1 5.2418 -4.4026 -0.1493 43 1 3.1823 -3.7499 0.9687 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14329782_13308374.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:44:12 Heat of formation + Delta-G solvation = 35.331802 kcal Electronic energy + Delta-G solvation = -27516.597106 eV Core-core repulsion = 23496.235591 eV Total energy + Delta-G solvation = -4020.361515 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.75807 -41.52439 -40.33574 -38.96542 -38.14234 -37.45357 -34.77205 -33.96324 -33.09231 -32.23095 -31.85790 -29.39249 -26.65314 -26.62253 -25.63450 -24.90246 -24.13222 -22.84090 -22.29017 -20.93568 -20.41646 -19.05039 -18.91500 -17.99109 -17.70586 -17.28783 -16.99601 -16.75313 -16.55051 -16.10532 -15.90023 -15.79760 -15.55866 -15.16532 -15.05520 -14.79073 -14.53611 -14.22967 -14.16608 -14.10367 -13.98256 -13.90701 -13.79518 -13.75290 -13.38849 -12.95804 -12.93713 -12.82905 -12.75292 -12.48201 -12.17710 -11.74744 -11.65509 -11.20426 -11.13976 -10.93231 -10.72247 -10.08367 -9.90253 -9.65749 -9.56676 -4.94096 -0.18507 0.24249 0.38413 0.83986 1.17600 1.43438 1.56232 1.71000 1.91066 1.92016 2.15220 2.25656 2.82990 2.86389 3.18477 3.39551 3.51389 3.71680 3.72669 3.77756 3.81456 3.94827 4.03030 4.13031 4.19655 4.21206 4.33480 4.39395 4.48324 4.52850 4.61807 4.65525 4.71526 4.78898 4.80958 4.85589 4.94069 5.02286 5.06664 5.10469 5.15535 5.22496 5.24410 5.35862 5.43696 5.54882 5.70293 5.90577 5.90702 6.33897 6.39662 6.50860 7.18725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.085 3.915 3 C -0.268 4.268 4 C 0.592 3.408 5 O -0.572 6.572 6 N -0.695 5.695 7 C 0.113 3.887 8 H 0.091 0.909 9 C -0.125 4.125 10 C -0.067 4.067 11 H 0.108 0.892 12 C -0.074 4.074 13 C -0.069 4.069 14 C -0.046 4.046 15 C 0.276 3.724 16 N -0.474 5.474 17 C -0.076 4.076 18 C -0.116 4.116 19 C -0.083 4.083 20 C -0.140 4.140 21 C -0.145 4.145 22 C -0.060 4.060 23 C -0.031 4.031 24 O -0.534 6.534 25 Si 0.768 3.232 26 O -0.174 6.174 27 H 0.102 0.898 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.412 0.588 31 H 0.109 0.891 32 H 0.082 0.918 33 H 0.139 0.861 34 H 0.140 0.860 35 H 0.156 0.844 36 H 0.151 0.849 37 H 0.066 0.934 38 H 0.107 0.893 39 H 0.178 0.822 40 H 0.158 0.842 41 H 0.390 0.610 42 H -0.284 1.284 43 H -0.295 1.295 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.282 -1.062 0.041 4.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.031 3.969 3 C -0.273 4.273 4 C 0.381 3.619 5 O -0.453 6.453 6 N -0.346 5.346 7 C 0.007 3.993 8 H 0.109 0.891 9 C -0.163 4.163 10 C -0.085 4.085 11 H 0.126 0.874 12 C -0.074 4.074 13 C -0.089 4.089 14 C -0.050 4.050 15 C -0.038 4.038 16 N -0.150 5.150 17 C -0.097 4.097 18 C -0.134 4.134 19 C -0.101 4.101 20 C -0.178 4.178 21 C -0.164 4.164 22 C -0.107 4.107 23 C -0.141 4.141 24 O -0.342 6.342 25 Si 0.672 3.328 26 O -0.071 6.071 27 H 0.120 0.880 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.249 0.751 31 H 0.128 0.872 32 H 0.101 0.899 33 H 0.156 0.844 34 H 0.158 0.842 35 H 0.173 0.827 36 H 0.168 0.832 37 H 0.085 0.915 38 H 0.125 0.875 39 H 0.196 0.804 40 H 0.176 0.824 41 H 0.240 0.760 42 H -0.211 1.211 43 H -0.222 1.222 Dipole moment (debyes) X Y Z Total from point charges -3.065 -1.450 -0.411 3.416 hybrid contribution 0.495 0.410 1.188 1.351 sum -2.570 -1.039 0.778 2.879 Atomic orbital electron populations 1.20710 0.82644 1.05366 1.05380 1.23236 0.94775 0.83036 0.95808 1.21217 0.94164 0.93541 1.18357 1.17319 0.85227 0.84320 0.75039 1.90758 1.17913 1.84470 1.52199 1.45373 1.09885 1.05044 1.74294 1.21925 0.99616 0.79693 0.98036 0.89108 1.23415 0.97187 0.99795 0.95926 1.21597 0.97281 0.92901 0.96753 0.87364 1.19678 0.92425 0.95907 0.99398 1.21200 0.96752 0.94578 0.96381 1.16100 0.84693 0.96039 1.08134 1.26176 0.93025 0.92354 0.92250 1.81319 1.13426 1.09140 1.11101 1.21414 0.92931 0.98577 0.96739 1.21391 0.95502 0.97865 0.98651 1.21604 1.00677 0.92053 0.95767 1.23580 0.96357 1.00876 0.97021 1.22804 0.96448 0.93563 1.03577 1.22813 0.82776 0.96002 1.09144 1.24484 0.91302 1.07300 0.91000 1.86640 1.40147 1.91518 1.15943 0.93555 0.78148 0.72189 0.88889 1.83684 1.16878 1.35110 1.71464 0.88000 0.88647 0.88458 0.75097 0.87238 0.89897 0.84359 0.84228 0.82653 0.83168 0.91525 0.87500 0.80420 0.82438 0.76015 1.21060 1.22167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.06 9.89 71.24 0.70 0.77 16 2 C 0.08 0.19 7.37 25.26 0.19 0.38 16 3 C -0.27 -0.60 6.31 -18.99 -0.12 -0.72 16 4 C 0.59 2.22 7.81 86.65 0.68 2.89 16 5 O -0.57 -5.72 14.45 -4.07 -0.06 -5.78 16 6 N -0.70 1.98 5.26 -443.34 -2.33 -0.36 16 7 C 0.11 -0.49 4.32 45.52 0.20 -0.30 16 8 H 0.09 -0.04 7.46 -2.39 -0.02 -0.06 16 9 C -0.13 1.08 7.29 31.12 0.23 1.31 16 10 C -0.07 0.58 3.85 -11.01 -0.04 0.54 16 11 H 0.11 -1.08 8.09 -2.39 -0.02 -1.10 16 12 C -0.07 0.50 5.28 -19.90 -0.11 0.40 16 13 C -0.07 0.29 9.41 22.54 0.21 0.51 16 14 C -0.05 0.06 5.73 -21.36 -0.12 -0.06 16 15 C 0.28 1.37 15.33 88.33 1.35 2.72 16 16 N -0.47 -5.39 18.54 19.00 0.35 -5.04 16 17 C -0.08 0.34 9.76 22.54 0.22 0.56 16 18 C -0.12 0.89 10.03 22.23 0.22 1.11 16 19 C -0.08 0.67 8.62 22.33 0.19 0.87 16 20 C -0.14 0.91 7.25 31.12 0.23 1.14 16 21 C -0.14 0.24 10.48 23.65 0.25 0.49 16 22 C -0.06 0.07 6.18 24.76 0.15 0.22 16 23 C -0.03 0.13 2.97 71.24 0.21 0.34 16 24 O -0.53 0.89 12.88 -148.98 -1.92 -1.03 16 25 Si 0.77 -2.27 32.09 68.60 2.20 -0.07 16 26 O -0.17 -0.23 8.90 4.47 0.04 -0.19 16 27 H 0.10 -0.27 8.14 -2.38 -0.02 -0.29 16 28 H 0.09 -0.39 8.14 -2.38 -0.02 -0.41 16 29 H 0.10 0.23 6.49 -2.39 -0.02 0.21 16 30 H 0.41 -3.09 7.87 -92.71 -0.73 -3.82 16 31 H 0.11 -1.09 7.73 -2.39 -0.02 -1.11 16 32 H 0.08 -0.74 8.14 -2.39 -0.02 -0.76 16 33 H 0.14 -0.86 8.05 -2.91 -0.02 -0.89 16 34 H 0.14 -0.90 8.06 -2.91 -0.02 -0.92 16 35 H 0.16 -1.84 8.06 -2.91 -0.02 -1.86 16 36 H 0.15 -1.79 6.63 -2.91 -0.02 -1.81 16 37 H 0.07 -0.26 8.14 -2.39 -0.02 -0.27 16 38 H 0.11 -0.90 6.29 -2.39 -0.02 -0.92 16 39 H 0.18 -1.20 7.74 -2.91 -0.02 -1.22 16 40 H 0.16 -1.27 7.96 -2.39 -0.02 -1.29 16 41 H 0.39 -2.45 8.70 -74.06 -0.64 -3.10 16 42 H -0.28 -0.82 7.11 99.48 0.71 -0.12 16 43 H -0.29 -1.04 7.11 99.48 0.71 -0.34 16 Total: 0.00 -22.02 375.93 2.67 -19.35 By element: Atomic # 1 Polarization: -19.81 SS G_CDS: -0.26 Total: -20.06 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: 4.64 Total: 13.17 kcal Atomic # 7 Polarization: -3.42 SS G_CDS: -1.98 Total: -5.40 kcal Atomic # 8 Polarization: -5.06 SS G_CDS: -1.94 Total: -7.00 kcal Atomic # 14 Polarization: -2.27 SS G_CDS: 2.20 Total: -0.07 kcal Total: -22.02 2.67 -19.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14329782_13308374.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.685 kcal (2) G-P(sol) polarization free energy of solvation -22.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds