Wall clock time and date at job start Sun Mar 7 2021 00:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39612 * 120.14807 * 248.04128 * 3 2 1 5 5 C 1.37966 * 119.84544 * 180.02562 * 4 3 2 6 6 C 1.38342 * 120.15228 * 0.02562 * 5 4 3 7 7 C 1.38387 * 120.30160 * 0.25702 * 6 5 4 8 8 C 1.50700 * 119.91813 * 179.74415 * 7 6 5 9 9 H 1.08999 * 112.84518 * 191.18895 * 8 7 6 10 10 C 1.53778 * 113.61919 * 322.49806 * 8 7 6 11 11 C 1.53779 * 87.08020 * 139.98312 * 10 8 7 12 12 H 1.09007 * 113.61181 * 220.01679 * 11 10 8 13 13 N 1.46499 * 113.69003 * 89.13150 * 11 10 8 14 14 C 1.34774 * 120.00311 * 107.46371 * 13 11 10 15 15 O 1.21598 * 119.99875 * 359.97438 * 14 13 11 16 16 C 1.47558 * 120.00129 * 179.97438 * 14 13 11 17 17 C 1.39826 * 120.00127 * 359.72848 * 16 14 13 18 18 C 1.36567 * 120.00035 * 179.69242 * 17 16 14 19 19 C 1.39826 * 119.99675 * 0.57736 * 18 17 16 20 20 C 1.47559 * 119.99405 * 179.69354 * 19 18 17 21 21 C 1.34977 * 125.28321 * 0.02695 * 20 19 18 22 22 C 1.37790 * 114.70377 * 179.97438 * 21 20 19 23 23 C 1.33740 * 115.08415 * 359.97438 * 22 21 20 24 24 C 1.50698 * 125.12031 * 180.02562 * 23 22 21 25 25 O 1.42903 * 109.47259 * 299.99473 * 24 23 22 26 26 Si 1.86306 * 109.47104 * 179.97438 * 24 23 22 27 27 S 1.75863 * 109.75874 * 359.75411 * 23 22 21 28 28 C 1.39820 * 120.00020 * 359.71770 * 19 18 17 29 29 C 1.36556 * 120.00599 * 359.97438 * 28 19 18 30 30 C 1.53775 * 87.08489 * 334.56688 * 11 10 8 31 31 C 1.37920 * 120.15324 * 359.47876 * 7 6 5 32 32 H 1.08005 * 120.07894 * 0.05289 * 4 3 2 33 33 H 1.08003 * 119.92610 * 179.97438 * 5 4 3 34 34 H 1.08002 * 119.84559 * 179.97438 * 6 5 4 35 35 H 1.09000 * 113.61285 * 254.53298 * 10 8 7 36 36 H 1.09002 * 113.61019 * 25.43193 * 10 8 7 37 37 H 0.96997 * 119.99774 * 287.45856 * 13 11 10 38 38 H 1.08006 * 120.00319 * 359.97438 * 17 16 14 39 39 H 1.08004 * 120.00244 * 180.29443 * 18 17 16 40 40 H 1.08008 * 122.64526 * 359.97438 * 21 20 19 41 41 H 1.08001 * 122.45816 * 179.97438 * 22 21 20 42 42 H 1.08996 * 109.47209 * 59.99782 * 24 23 22 43 43 H 0.96699 * 114.00055 * 300.00507 * 25 24 23 44 44 H 1.48502 * 109.99708 * 58.68027 * 26 24 23 45 45 H 1.48497 * 110.00111 * 179.97438 * 26 24 23 46 46 H 1.08001 * 119.99279 * 179.97438 * 28 19 18 47 47 H 1.07999 * 120.00130 * 179.97438 * 29 28 19 48 48 H 1.08996 * 113.62054 * 270.88492 * 30 11 10 49 49 H 1.08998 * 113.61718 * 139.97884 * 30 11 10 50 50 H 1.08002 * 120.07871 * 180.25451 * 31 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2690 0.4524 1.1197 5 6 4.6487 0.4508 1.1127 6 6 5.3375 0.0034 -0.0005 7 6 4.6489 -0.4403 -1.1159 8 6 5.4079 -0.9203 -2.3261 9 1 4.7696 -1.0579 -3.1989 10 6 6.6832 -0.1109 -2.6146 11 6 7.3583 -1.4478 -2.9637 12 1 8.3840 -1.5262 -2.6032 13 7 7.2198 -1.8270 -4.3720 14 6 8.2830 -1.7550 -5.1970 15 8 9.3572 -1.3748 -4.7726 16 6 8.1436 -2.1375 -6.6154 17 6 6.9097 -2.5800 -7.1021 18 6 6.7791 -2.9280 -8.4162 19 6 7.8823 -2.8533 -9.2721 20 6 7.7428 -3.2358 -10.6904 21 6 6.6051 -3.6703 -11.2725 22 6 6.7212 -3.9675 -12.6129 23 6 7.9395 -3.7803 -13.1318 24 6 8.3182 -4.0328 -14.5684 25 8 8.0898 -5.4070 -14.8868 26 14 10.1200 -3.6286 -14.8159 27 16 9.0312 -3.1878 -11.8868 28 6 9.1176 -2.4167 -8.7840 29 6 9.2467 -2.0627 -7.4714 30 6 6.3278 -2.1192 -2.0407 31 6 3.2697 -0.4492 -1.1205 32 1 2.7326 0.8019 1.9895 33 1 5.1923 0.8004 1.9780 34 1 6.4175 0.0047 -0.0008 35 1 6.5883 0.5654 -3.4641 36 1 7.1024 0.3726 -1.7321 37 1 6.3628 -2.1299 -4.7106 38 1 6.0588 -2.6423 -6.4399 39 1 5.8249 -3.2653 -8.7933 40 1 5.6770 -3.7765 -10.7303 41 1 5.8893 -4.3253 -13.2014 42 1 7.7121 -3.4033 -15.2199 43 1 8.5978 -6.0260 -14.3447 44 1 10.9554 -4.4574 -13.9102 45 1 10.5061 -3.8740 -16.2286 46 1 9.9697 -2.3594 -9.4451 47 1 10.2010 -1.7258 -7.0943 48 1 6.6498 -2.1848 -1.0014 49 1 5.9460 -3.0642 -2.4269 50 1 2.7336 -0.7996 -1.9902 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14329782_13308390.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:44:16 Heat of formation + Delta-G solvation = 85.053672 kcal Electronic energy + Delta-G solvation = -33514.383124 eV Core-core repulsion = 28951.806209 eV Total energy + Delta-G solvation = -4562.576915 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 417.119 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -41.74675 -40.89842 -39.96659 -39.23169 -38.75387 -37.48583 -37.42054 -34.82037 -33.42852 -32.33723 -32.21917 -31.75733 -30.40469 -27.41093 -26.62607 -26.14117 -24.99162 -24.54183 -23.91901 -23.41171 -22.75795 -21.82873 -20.72871 -20.26794 -19.17459 -18.99666 -18.59261 -17.68446 -17.28798 -17.13948 -16.65493 -16.57576 -16.32395 -16.17155 -16.15063 -15.99163 -15.78841 -15.42515 -15.17141 -15.10805 -14.89209 -14.63406 -14.45199 -14.38457 -14.20926 -14.15190 -13.98208 -13.79217 -13.75774 -13.61996 -13.40988 -13.27880 -13.08295 -12.93172 -12.76377 -12.53519 -12.46907 -12.41420 -12.06921 -11.73674 -11.64847 -11.51412 -11.18053 -11.09673 -10.86817 -10.63679 -10.16564 -10.09134 -9.89073 -9.64039 -9.53961 -9.01340 -5.08489 -0.87251 -0.17315 0.26887 0.36369 0.39655 0.40283 0.77407 1.20915 1.52778 1.57659 1.57851 1.84920 1.92298 1.97974 2.06318 2.84119 2.84967 2.87856 3.30963 3.43438 3.52194 3.66471 3.71782 3.73283 3.77087 3.81171 3.86872 3.96141 4.04172 4.20617 4.21431 4.23345 4.33722 4.34833 4.42275 4.52685 4.53582 4.58090 4.63794 4.72699 4.80455 4.86740 4.92306 4.94568 5.03029 5.03487 5.08315 5.11694 5.12658 5.21706 5.25285 5.30945 5.34467 5.36917 5.44493 5.49800 5.54311 5.70429 5.76134 5.91706 6.37649 6.41097 6.48454 7.16110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C 0.276 3.724 3 C -0.046 4.046 4 C -0.077 4.077 5 C -0.117 4.117 6 C -0.083 4.083 7 C -0.074 4.074 8 C -0.066 4.066 9 H 0.114 0.886 10 C -0.142 4.142 11 C 0.109 3.891 12 H 0.087 0.913 13 N -0.694 5.694 14 C 0.560 3.440 15 O -0.579 6.579 16 C -0.150 4.150 17 C -0.067 4.067 18 C -0.109 4.109 19 C 0.005 3.995 20 C -0.159 4.159 21 C -0.117 4.117 22 C -0.110 4.110 23 C -0.219 4.219 24 C -0.034 4.034 25 O -0.539 6.539 26 Si 0.709 3.291 27 S 0.123 5.877 28 C -0.129 4.129 29 C -0.064 4.064 30 C -0.124 4.124 31 C -0.067 4.067 32 H 0.139 0.861 33 H 0.154 0.846 34 H 0.149 0.851 35 H 0.067 0.933 36 H 0.104 0.896 37 H 0.415 0.585 38 H 0.164 0.836 39 H 0.159 0.841 40 H 0.166 0.834 41 H 0.154 0.846 42 H 0.139 0.861 43 H 0.388 0.612 44 H -0.266 1.266 45 H -0.272 1.272 46 H 0.133 0.867 47 H 0.129 0.871 48 H 0.107 0.893 49 H 0.087 0.913 50 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.022 -0.070 0.464 1.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.150 5.150 2 C -0.038 4.038 3 C -0.050 4.050 4 C -0.097 4.097 5 C -0.135 4.135 6 C -0.102 4.102 7 C -0.074 4.074 8 C -0.084 4.084 9 H 0.132 0.868 10 C -0.180 4.180 11 C 0.004 3.996 12 H 0.105 0.895 13 N -0.346 5.346 14 C 0.349 3.651 15 O -0.460 6.460 16 C -0.154 4.154 17 C -0.086 4.086 18 C -0.129 4.129 19 C 0.003 3.997 20 C -0.276 4.276 21 C -0.147 4.147 22 C -0.141 4.141 23 C -0.337 4.337 24 C -0.146 4.146 25 O -0.347 6.347 26 Si 0.611 3.389 27 S 0.390 5.610 28 C -0.148 4.148 29 C -0.083 4.083 30 C -0.162 4.162 31 C -0.087 4.087 32 H 0.157 0.843 33 H 0.172 0.828 34 H 0.167 0.833 35 H 0.086 0.914 36 H 0.123 0.877 37 H 0.254 0.746 38 H 0.181 0.819 39 H 0.177 0.823 40 H 0.184 0.816 41 H 0.171 0.829 42 H 0.157 0.843 43 H 0.237 0.763 44 H -0.192 1.192 45 H -0.198 1.198 46 H 0.151 0.849 47 H 0.147 0.853 48 H 0.126 0.874 49 H 0.106 0.894 50 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.944 0.558 0.102 2.025 hybrid contribution -1.528 -1.516 0.026 2.152 sum 0.416 -0.957 0.127 1.052 Atomic orbital electron populations 1.81321 1.13803 1.10696 1.09191 1.26172 0.93095 0.92207 0.92300 1.16105 0.82856 1.07935 0.98080 1.21407 0.95181 0.96538 0.96600 1.21375 0.93118 0.99364 0.99655 1.21601 1.01648 0.94954 0.91992 1.19681 0.92361 0.99239 0.96101 1.21621 0.94702 0.96412 0.95701 0.86835 1.23586 0.95399 0.96330 1.02715 1.21938 1.00428 0.96634 0.80589 0.89505 1.45467 1.12787 1.66878 1.09432 1.18434 0.83733 0.76729 0.86228 1.90788 1.28646 1.48731 1.77812 1.20027 0.96027 1.06253 0.93044 1.21262 0.96222 0.94988 0.96098 1.21197 0.98911 0.99942 0.92856 1.18466 0.94355 0.96840 0.90001 1.23185 0.97917 1.09953 0.96548 1.20631 0.98998 1.00475 0.94638 1.20182 0.97478 1.01246 0.95163 1.25090 0.97895 1.10425 1.00240 1.24453 1.12966 0.85727 0.91430 1.86600 1.69547 1.15308 1.63279 0.94484 0.73096 0.90956 0.80321 1.84211 1.13020 1.64100 0.99666 1.21028 0.97298 1.00673 0.95765 1.20949 0.98732 0.95765 0.92825 1.23413 0.94333 0.97827 1.00644 1.21212 0.94095 0.96709 0.96713 0.84322 0.82836 0.83320 0.91446 0.87742 0.74626 0.81899 0.82310 0.81645 0.82887 0.84335 0.76282 1.19173 1.19768 0.84907 0.85276 0.87428 0.89391 0.84068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -5.05 18.54 19.01 0.35 -4.70 16 2 C 0.28 1.15 15.33 88.33 1.35 2.51 16 3 C -0.05 0.10 5.73 -21.36 -0.12 -0.02 16 4 C -0.08 0.38 9.76 22.54 0.22 0.60 16 5 C -0.12 0.93 10.03 22.23 0.22 1.15 16 6 C -0.08 0.72 8.60 22.33 0.19 0.91 16 7 C -0.07 0.58 5.28 -19.90 -0.11 0.47 16 8 C -0.07 0.67 3.86 -11.01 -0.04 0.62 16 9 H 0.11 -1.41 8.09 -2.39 -0.02 -1.43 16 10 C -0.14 1.02 7.25 31.12 0.23 1.25 16 11 C 0.11 -0.57 4.32 45.52 0.20 -0.38 16 12 H 0.09 -0.03 7.46 -2.38 -0.02 -0.05 16 13 N -0.69 3.31 5.22 -443.18 -2.31 1.00 16 14 C 0.56 1.64 7.76 86.70 0.67 2.31 16 15 O -0.58 -6.86 15.93 -4.02 -0.06 -6.92 16 16 C -0.15 -0.06 5.88 -20.05 -0.12 -0.17 16 17 C -0.07 0.39 9.48 22.26 0.21 0.60 16 18 C -0.11 0.55 9.48 22.26 0.21 0.76 16 19 C 0.01 0.00 5.88 -20.05 -0.12 -0.12 16 20 C -0.16 0.13 6.37 23.98 0.15 0.28 16 21 C -0.12 0.34 9.64 21.41 0.21 0.55 16 22 C -0.11 0.21 10.00 21.14 0.21 0.43 16 23 C -0.22 0.29 5.73 24.66 0.14 0.43 16 24 C -0.03 0.06 2.96 71.24 0.21 0.28 16 25 O -0.54 -0.36 12.86 -148.98 -1.92 -2.28 16 26 Si 0.71 -1.15 30.96 68.60 2.12 0.98 16 27 S 0.12 -0.10 19.46 -56.49 -1.10 -1.20 16 28 C -0.13 -0.10 9.54 22.26 0.21 0.11 16 29 C -0.06 -0.17 9.53 22.26 0.21 0.05 16 30 C -0.12 1.25 7.29 31.12 0.23 1.47 16 31 C -0.07 0.37 9.41 22.54 0.21 0.58 16 32 H 0.14 -0.93 8.06 -2.91 -0.02 -0.95 16 33 H 0.15 -1.81 8.06 -2.91 -0.02 -1.83 16 34 H 0.15 -1.80 6.64 -2.91 -0.02 -1.81 16 35 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 36 H 0.10 -0.90 6.30 -2.39 -0.02 -0.91 16 37 H 0.42 -4.65 6.71 -92.71 -0.62 -5.28 16 38 H 0.16 -2.18 6.38 -2.91 -0.02 -2.20 16 39 H 0.16 -1.65 6.74 -2.91 -0.02 -1.66 16 40 H 0.17 -1.31 6.88 -2.91 -0.02 -1.33 16 41 H 0.15 -0.57 8.06 -2.91 -0.02 -0.59 16 42 H 0.14 -0.59 7.96 -2.39 -0.02 -0.61 16 43 H 0.39 -1.74 8.70 -74.06 -0.64 -2.38 16 44 H -0.27 -0.67 7.11 99.48 0.71 0.04 16 45 H -0.27 -1.24 7.11 99.48 0.71 -0.54 16 46 H 0.13 -0.11 7.26 -2.91 -0.02 -0.13 16 47 H 0.13 0.54 7.64 -2.91 -0.02 0.52 16 48 H 0.11 -1.16 7.72 -2.39 -0.02 -1.18 16 49 H 0.09 -0.98 8.14 -2.39 -0.02 -1.00 16 50 H 0.14 -1.12 8.05 -2.91 -0.02 -1.15 16 Total: 0.00 -24.95 439.29 1.68 -23.28 By element: Atomic # 1 Polarization: -24.62 SS G_CDS: -0.20 Total: -24.81 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: 4.79 Total: 14.66 kcal Atomic # 7 Polarization: -1.74 SS G_CDS: -1.96 Total: -3.70 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: -1.98 Total: -9.20 kcal Atomic # 14 Polarization: -1.15 SS G_CDS: 2.12 Total: 0.98 kcal Atomic # 16 Polarization: -0.10 SS G_CDS: -1.10 Total: -1.20 kcal Total: -24.95 1.68 -23.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14329782_13308390.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.331 kcal (2) G-P(sol) polarization free energy of solvation -24.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds