Wall clock time and date at job start Sun Mar 7 2021 00:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39608 * 120.15012 * 277.72575 * 3 2 1 5 5 C 1.37969 * 119.84542 * 180.02562 * 4 3 2 6 6 C 1.38346 * 120.15033 * 0.02562 * 5 4 3 7 7 C 1.38382 * 120.30630 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.92517 * 179.97438 * 7 6 5 9 9 H 1.08997 * 112.84899 * 168.80285 * 8 7 6 10 10 C 1.53777 * 113.61143 * 300.00031 * 8 7 6 11 11 C 1.53780 * 87.07853 * 140.06405 * 10 8 7 12 12 H 1.09001 * 113.61643 * 219.93214 * 11 10 8 13 13 N 1.46499 * 113.61299 * 89.11339 * 11 10 8 14 14 C 1.34786 * 119.99743 * 154.99714 * 13 11 10 15 15 O 1.21272 * 120.00169 * 0.02562 * 14 13 11 16 16 C 1.50703 * 119.99623 * 180.02562 * 14 13 11 17 17 C 1.53000 * 109.46859 * 180.02562 * 16 14 13 18 18 O 1.42895 * 109.47428 * 179.97438 * 17 16 14 19 19 C 1.35898 * 117.00524 * 180.02562 * 18 17 16 20 20 C 1.38711 * 120.05861 * 180.23187 * 19 18 17 21 21 C 1.38161 * 119.94407 * 180.31402 * 20 19 18 22 22 C 1.50706 * 119.97430 * 179.70598 * 21 20 19 23 23 O 1.42906 * 109.46702 * 299.72266 * 22 21 20 24 24 Si 1.86301 * 109.47233 * 179.72555 * 22 21 20 25 25 C 1.38253 * 120.05593 * 359.42782 * 21 20 19 26 26 C 1.38282 * 120.10829 * 0.29690 * 25 21 20 27 27 C 1.38125 * 120.05576 * 359.97438 * 26 25 21 28 28 C 1.53776 * 113.68737 * 37.53638 * 8 7 6 29 29 C 1.37929 * 120.14948 * 0.25732 * 7 6 5 30 30 H 1.08000 * 120.07754 * 0.02591 * 4 3 2 31 31 H 1.08001 * 119.92532 * 179.97438 * 5 4 3 32 32 H 1.08002 * 119.84534 * 179.97438 * 6 5 4 33 33 H 1.08998 * 113.61573 * 25.51829 * 10 8 7 34 34 H 1.09000 * 113.61308 * 254.61099 * 10 8 7 35 35 H 0.96998 * 120.00422 * 335.00351 * 13 11 10 36 36 H 1.08991 * 109.47148 * 60.00133 * 16 14 13 37 37 H 1.08997 * 109.47222 * 300.00004 * 16 14 13 38 38 H 1.09007 * 109.47015 * 59.99857 * 17 16 14 39 39 H 1.08998 * 109.47457 * 300.00189 * 17 16 14 40 40 H 1.08002 * 120.02635 * 0.02562 * 20 19 18 41 41 H 1.09000 * 109.47318 * 59.71845 * 22 21 20 42 42 H 0.96696 * 113.99911 * 300.00170 * 23 22 21 43 43 H 1.48498 * 109.99815 * 179.97438 * 24 22 21 44 44 H 1.48492 * 109.99988 * 301.31687 * 24 22 21 45 45 H 1.07994 * 119.94384 * 180.27641 * 25 21 20 46 46 H 1.07999 * 119.96821 * 179.97438 * 26 25 21 47 47 H 1.07999 * 120.02219 * 179.97438 * 27 26 25 48 48 H 1.09003 * 113.61450 * 105.46385 * 28 8 7 49 49 H 1.09004 * 113.61920 * 334.55660 * 28 8 7 50 50 H 1.08001 * 120.07676 * 179.74598 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2693 -0.1613 1.1962 5 6 4.6490 -0.1592 1.1890 6 6 5.3374 0.0035 0.0001 7 6 4.6486 0.1645 -1.1892 8 6 5.4072 0.3417 -2.4793 9 1 4.7692 0.2638 -3.3596 10 6 6.3241 1.5762 -2.4902 11 6 7.3559 0.7057 -3.2268 12 1 8.3817 0.8718 -2.8977 13 7 7.2143 0.7349 -4.6846 14 6 8.2770 0.4700 -5.4703 15 8 9.3502 0.2071 -4.9704 16 6 8.1316 0.5006 -6.9699 17 6 9.4758 0.1661 -7.6196 18 8 9.3378 0.1945 -9.0416 19 6 10.4478 -0.0831 -9.7749 20 6 10.3866 -0.0685 -11.1606 21 6 11.5149 -0.3574 -11.9038 22 6 11.4476 -0.3483 -13.4093 23 8 10.4928 -1.3163 -13.8492 24 14 13.1230 -0.7665 -14.1085 25 6 12.7072 -0.6492 -11.2675 26 6 12.7722 -0.6587 -9.8863 27 6 11.6456 -0.3761 -9.1388 28 6 6.6844 -0.5102 -2.5669 29 6 3.2694 0.1692 -1.1959 30 1 2.7331 -0.2880 2.1251 31 1 5.1928 -0.2840 2.1138 32 1 6.4175 0.0048 0.0002 33 1 6.6464 1.8894 -1.4972 34 1 5.9396 2.4003 -3.0911 35 1 6.3559 0.9449 -5.0845 36 1 7.8132 1.4946 -7.2839 37 1 7.3870 -0.2335 -7.2778 38 1 9.7937 -0.8281 -7.3055 39 1 10.2207 0.8998 -7.3118 40 1 9.4566 0.1638 -11.6581 41 1 11.1468 0.6412 -13.7536 42 1 10.6972 -2.2217 -13.5781 43 1 13.0697 -0.7614 -15.5925 44 1 14.1312 0.2145 -13.6326 45 1 13.5891 -0.8704 -11.8503 46 1 13.7046 -0.8874 -9.3916 47 1 11.6968 -0.3841 -8.0600 48 1 6.5909 -1.3705 -3.2298 49 1 7.1054 -0.7674 -1.5949 50 1 2.7330 0.2990 -2.1242 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14329782_4549614.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:45:13 Heat of formation + Delta-G solvation = 6.254538 kcal Electronic energy + Delta-G solvation = -31440.458004 eV Core-core repulsion = 26979.534226 eV Total energy + Delta-G solvation = -4460.923778 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 379.162 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -41.66170 -41.27345 -40.49618 -39.28192 -38.89431 -37.46560 -37.25398 -34.63969 -33.27990 -32.45358 -32.23608 -31.86137 -30.75693 -27.12009 -26.63719 -26.44442 -25.29398 -24.65056 -23.66727 -22.80386 -22.20185 -21.46827 -20.68725 -19.37368 -18.97974 -18.15408 -17.69983 -17.48506 -17.29695 -17.10336 -17.00234 -16.83211 -16.51280 -16.21949 -16.02304 -15.72580 -15.43365 -15.19254 -15.09919 -14.87727 -14.78159 -14.50774 -14.28809 -14.23178 -14.18084 -14.12393 -13.87538 -13.76250 -13.39665 -13.21399 -13.01918 -12.87943 -12.80807 -12.76703 -12.48829 -12.36416 -11.99083 -11.80856 -11.75012 -11.65438 -11.62120 -11.19666 -11.04458 -10.49689 -10.08157 -9.92477 -9.90806 -9.65602 -9.27073 -4.97449 -0.19065 0.20046 0.37807 0.39229 1.30844 1.52428 1.55946 1.65772 1.71525 1.90677 1.97863 2.49730 2.67086 2.82571 2.85827 3.51167 3.52015 3.57677 3.66585 3.72419 3.76042 3.85528 3.90539 3.94097 3.98531 4.03578 4.10363 4.19416 4.20854 4.23714 4.28897 4.33156 4.39670 4.50771 4.52466 4.61937 4.68577 4.72545 4.76590 4.79562 4.85434 4.93020 4.98149 5.02599 5.06914 5.10409 5.22159 5.26221 5.35351 5.38176 5.42903 5.44157 5.53631 5.69882 5.70615 5.90102 6.33361 6.39352 6.48322 6.76369 7.17882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C 0.276 3.724 3 C -0.046 4.046 4 C -0.077 4.077 5 C -0.117 4.117 6 C -0.083 4.083 7 C -0.074 4.074 8 C -0.067 4.067 9 H 0.112 0.888 10 C -0.126 4.126 11 C 0.111 3.889 12 H 0.087 0.913 13 N -0.699 5.699 14 C 0.524 3.476 15 O -0.581 6.581 16 C -0.134 4.134 17 C 0.074 3.926 18 O -0.325 6.325 19 C 0.117 3.883 20 C -0.142 4.142 21 C -0.084 4.084 22 C -0.078 4.078 23 O -0.555 6.555 24 Si 0.785 3.215 25 C -0.158 4.158 26 C -0.075 4.075 27 C -0.211 4.211 28 C -0.141 4.141 29 C -0.068 4.068 30 H 0.139 0.861 31 H 0.155 0.845 32 H 0.150 0.850 33 H 0.106 0.894 34 H 0.086 0.914 35 H 0.418 0.582 36 H 0.125 0.875 37 H 0.126 0.874 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.126 0.874 41 H 0.106 0.894 42 H 0.396 0.604 43 H -0.299 1.299 44 H -0.284 1.284 45 H 0.148 0.852 46 H 0.153 0.847 47 H 0.138 0.862 48 H 0.068 0.932 49 H 0.103 0.897 50 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.572 -1.152 2.306 5.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.150 5.150 2 C -0.038 4.038 3 C -0.050 4.050 4 C -0.097 4.097 5 C -0.135 4.135 6 C -0.102 4.102 7 C -0.074 4.074 8 C -0.086 4.086 9 H 0.130 0.870 10 C -0.163 4.163 11 C 0.006 3.994 12 H 0.105 0.895 13 N -0.351 5.351 14 C 0.311 3.689 15 O -0.461 6.461 16 C -0.174 4.174 17 C -0.002 4.002 18 O -0.239 6.239 19 C 0.072 3.928 20 C -0.161 4.161 21 C -0.085 4.085 22 C -0.187 4.187 23 O -0.363 6.363 24 Si 0.691 3.309 25 C -0.175 4.175 26 C -0.093 4.093 27 C -0.230 4.230 28 C -0.180 4.180 29 C -0.089 4.089 30 H 0.157 0.843 31 H 0.172 0.828 32 H 0.167 0.833 33 H 0.124 0.876 34 H 0.104 0.896 35 H 0.256 0.744 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.144 0.856 41 H 0.124 0.876 42 H 0.246 0.754 43 H -0.227 1.227 44 H -0.211 1.211 45 H 0.165 0.835 46 H 0.171 0.829 47 H 0.155 0.845 48 H 0.086 0.914 49 H 0.121 0.879 50 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.723 -0.493 1.868 4.194 hybrid contribution -0.692 0.586 0.295 0.954 sum 3.030 0.094 2.163 3.724 Atomic orbital electron populations 1.81321 1.13811 1.10941 1.08930 1.26181 0.93109 0.92199 0.92323 1.16108 0.82850 1.09585 0.96429 1.21411 0.95201 0.96528 0.96580 1.21385 0.93102 0.99277 0.99716 1.21598 1.01649 0.95422 0.91503 1.19698 0.92336 0.99706 0.95697 1.21619 0.94783 0.97090 0.95062 0.87006 1.23406 0.94515 0.96486 1.01931 1.21900 1.00236 0.97755 0.79551 0.89462 1.45550 1.13052 1.70465 1.06004 1.20558 0.83642 0.75276 0.89427 1.90736 1.28538 1.49875 1.76958 1.21443 0.98420 1.07504 0.89990 1.22452 0.98427 1.02320 0.76978 1.85952 1.32995 1.85332 1.19655 1.19133 0.86145 0.96151 0.91342 1.20313 0.99915 1.05497 0.90387 1.20238 0.93258 0.98778 0.96182 1.25300 1.05905 0.95643 0.91899 1.86468 1.50710 1.20841 1.78314 0.93532 0.72568 0.88630 0.76192 1.21177 0.97372 1.03729 0.95258 1.21254 0.98588 0.95833 0.93587 1.21554 0.93059 1.07042 1.01299 1.23576 0.95308 0.97029 1.02079 1.21213 0.94162 0.96802 0.96679 0.84286 0.82761 0.83266 0.87587 0.89568 0.74424 0.85696 0.85591 0.91522 0.91735 0.85569 0.87610 0.75440 1.22695 1.21068 0.83488 0.82900 0.84466 0.91358 0.87864 0.84222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -5.20 18.54 19.01 0.35 -4.85 16 2 C 0.28 1.23 15.33 88.33 1.35 2.59 16 3 C -0.05 0.09 5.73 -21.36 -0.12 -0.03 16 4 C -0.08 0.37 9.76 22.54 0.22 0.59 16 5 C -0.12 0.94 10.03 22.23 0.22 1.16 16 6 C -0.08 0.73 8.61 22.33 0.19 0.92 16 7 C -0.07 0.58 5.28 -19.90 -0.11 0.47 16 8 C -0.07 0.69 3.85 -11.02 -0.04 0.65 16 9 H 0.11 -1.36 8.09 -2.39 -0.02 -1.38 16 10 C -0.13 1.31 7.29 31.12 0.23 1.54 16 11 C 0.11 -0.74 4.32 45.52 0.20 -0.54 16 12 H 0.09 -0.18 7.46 -2.39 -0.02 -0.20 16 13 N -0.70 5.11 5.26 -440.03 -2.32 2.80 16 14 C 0.52 -0.87 7.83 87.66 0.69 -0.18 16 15 O -0.58 -4.26 15.58 -3.00 -0.05 -4.31 16 16 C -0.13 0.73 6.07 29.85 0.18 0.91 16 17 C 0.07 0.02 4.03 71.98 0.29 0.31 16 18 O -0.33 -1.27 10.14 -92.40 -0.94 -2.20 16 19 C 0.12 0.56 6.69 22.50 0.15 0.71 16 20 C -0.14 -0.67 9.56 22.36 0.21 -0.46 16 21 C -0.08 -0.15 5.39 -19.88 -0.11 -0.26 16 22 C -0.08 -0.04 2.82 71.24 0.20 0.16 16 23 O -0.56 -0.70 12.77 -148.98 -1.90 -2.60 16 24 Si 0.79 -1.68 29.79 68.60 2.04 0.37 16 25 C -0.16 0.10 8.67 22.28 0.19 0.29 16 26 C -0.07 0.03 10.04 22.25 0.22 0.25 16 27 C -0.21 -0.50 9.04 22.36 0.20 -0.30 16 28 C -0.14 1.15 7.25 31.12 0.23 1.38 16 29 C -0.07 0.35 9.41 22.54 0.21 0.56 16 30 H 0.14 -0.93 8.06 -2.91 -0.02 -0.95 16 31 H 0.15 -1.85 8.06 -2.91 -0.02 -1.88 16 32 H 0.15 -1.85 6.65 -2.91 -0.02 -1.87 16 33 H 0.11 -1.17 7.72 -2.39 -0.02 -1.19 16 34 H 0.09 -0.97 8.14 -2.39 -0.02 -0.99 16 35 H 0.42 -5.48 8.70 -92.71 -0.81 -6.29 16 36 H 0.12 -1.09 8.14 -2.39 -0.02 -1.11 16 37 H 0.13 -1.12 8.14 -2.39 -0.02 -1.14 16 38 H 0.07 0.08 7.62 -2.38 -0.02 0.07 16 39 H 0.06 0.10 7.62 -2.39 -0.02 0.08 16 40 H 0.13 0.67 8.06 -2.91 -0.02 0.65 16 41 H 0.11 0.20 7.96 -2.39 -0.02 0.18 16 42 H 0.40 -2.73 8.70 -74.06 -0.64 -3.38 16 43 H -0.30 -1.56 7.11 99.48 0.71 -0.86 16 44 H -0.28 -0.63 7.11 99.48 0.71 0.08 16 45 H 0.15 -0.76 4.87 -2.91 -0.01 -0.77 16 46 H 0.15 -0.82 8.06 -2.91 -0.02 -0.84 16 47 H 0.14 0.10 6.30 -2.91 -0.02 0.08 16 48 H 0.07 -0.40 8.14 -2.39 -0.02 -0.42 16 49 H 0.10 -0.96 6.31 -2.39 -0.02 -0.97 16 50 H 0.14 -1.03 8.05 -2.91 -0.02 -1.05 16 Total: 0.00 -25.84 424.14 1.60 -24.24 By element: Atomic # 1 Polarization: -23.75 SS G_CDS: -0.41 Total: -24.16 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: 4.82 Total: 10.72 kcal Atomic # 7 Polarization: -0.09 SS G_CDS: -1.96 Total: -2.05 kcal Atomic # 8 Polarization: -6.23 SS G_CDS: -2.89 Total: -9.11 kcal Atomic # 14 Polarization: -1.68 SS G_CDS: 2.04 Total: 0.37 kcal Total: -25.84 1.60 -24.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14329782_4549614.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.499 kcal (2) G-P(sol) polarization free energy of solvation -25.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds