Wall clock time and date at job start Sun Mar 7 2021 00:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35993 * 117.00129 * 2 1 4 4 C 1.39149 * 120.07499 * 179.97438 * 3 2 1 5 5 O 1.35994 * 120.07341 * 0.02562 * 4 3 2 6 6 C 1.42904 * 117.00295 * 179.97438 * 5 4 3 7 7 C 1.50696 * 109.47018 * 179.97438 * 6 5 4 8 8 O 1.21284 * 120.00310 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99951 * 179.97438 * 7 6 5 10 10 C 1.46496 * 120.00170 * 179.97438 * 9 7 6 11 11 H 1.09007 * 112.84819 * 23.81030 * 10 9 7 12 12 C 1.53784 * 113.61139 * 155.00076 * 10 9 7 13 13 C 1.53777 * 87.07975 * 89.11900 * 12 10 9 14 14 H 1.08994 * 113.61650 * 270.87969 * 13 12 10 15 15 C 1.50702 * 113.61488 * 140.06332 * 13 12 10 16 16 C 1.37924 * 119.92608 * 119.99455 * 15 13 12 17 17 C 1.39650 * 119.85052 * 179.97438 * 16 15 13 18 18 C 1.43198 * 120.15348 * 180.02562 * 17 16 15 19 19 N 9.93232 * 164.33894 * 66.86724 * 7 1 2 20 20 C 1.39613 * 119.69736 * 0.02562 * 17 16 15 21 21 C 1.37978 * 119.84597 * 359.97438 * 20 17 16 22 22 C 1.38343 * 120.14844 * 359.74085 * 21 20 17 23 23 C 1.53776 * 87.08353 * 25.43210 * 13 12 10 24 24 C 1.38569 * 119.85403 * 180.02562 * 4 3 2 25 25 C 1.38239 * 120.00051 * 359.72821 * 24 4 3 26 26 C 1.38256 * 120.14381 * 0.55150 * 25 24 4 27 27 C 1.50693 * 119.92431 * 179.72611 * 26 25 24 28 28 O 1.42907 * 109.47661 * 119.72549 * 27 26 25 29 29 Si 1.86298 * 109.47618 * 359.72239 * 27 26 25 30 30 C 1.38240 * 120.14513 * 359.44463 * 26 25 24 31 31 H 1.09000 * 109.47651 * 59.99518 * 1 2 3 32 32 H 1.08997 * 109.47249 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46714 * 299.99241 * 1 2 3 34 34 H 1.09003 * 109.46706 * 299.99750 * 6 5 4 35 35 H 1.08996 * 109.47140 * 59.99827 * 6 5 4 36 36 H 0.97003 * 119.99722 * 0.02562 * 9 7 6 37 37 H 1.09006 * 113.60971 * 203.66968 * 12 10 9 38 38 H 1.09003 * 113.61668 * 334.48452 * 12 10 9 39 39 H 1.08007 * 120.07549 * 0.02562 * 16 15 13 40 40 H 1.08001 * 120.07809 * 179.97438 * 20 17 16 41 41 H 1.07999 * 119.92260 * 180.02562 * 21 20 17 42 42 H 1.08001 * 119.84363 * 180.27603 * 22 21 20 43 43 H 1.08998 * 113.61914 * 220.02176 * 23 13 12 44 44 H 1.09000 * 113.61907 * 89.11166 * 23 13 12 45 45 H 1.07999 * 119.99937 * 179.97438 * 24 4 3 46 46 H 1.08001 * 119.92844 * 180.27182 * 25 24 4 47 47 H 1.09000 * 109.46936 * 239.72172 * 27 26 25 48 48 H 0.96697 * 114.00527 * 179.97438 * 28 27 26 49 49 H 1.48506 * 109.99834 * 298.68714 * 29 27 26 50 50 H 1.48502 * 110.00011 * 59.99978 * 29 27 26 51 51 H 1.08011 * 119.99834 * 180.25547 * 30 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4359 1.2863 0.0005 5 8 4.1795 0.1477 0.0005 6 6 5.6004 0.3006 0.0005 7 6 6.2518 -1.0582 0.0012 8 8 5.5669 -2.0592 0.0021 9 7 7.5957 -1.1613 0.0008 10 6 8.2290 -2.4823 0.0020 11 1 7.5832 -3.2617 -0.4025 12 6 9.6467 -2.4862 -0.5941 13 6 10.1585 -2.1807 0.8234 14 1 10.2148 -1.1154 1.0472 15 6 11.4210 -2.9214 1.1821 16 6 12.5610 -2.2187 1.5120 17 6 13.7298 -2.9067 1.8447 18 6 14.9170 -2.1836 2.1887 19 7 15.8571 -1.6130 2.4674 20 6 13.7357 -4.3028 1.8402 21 6 12.5881 -4.9932 1.5082 22 6 11.4321 -4.3052 1.1855 23 6 8.8780 -2.8531 1.3458 24 6 4.0603 2.5234 0.0011 25 6 3.3030 3.6798 -0.0046 26 6 1.9224 3.6057 0.0007 27 6 1.1017 4.8696 0.0007 28 8 0.2776 4.9026 -1.1664 29 14 2.2365 6.3471 0.0015 30 6 1.2933 2.3748 0.0001 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8901 34 1 5.9065 0.8504 -0.8895 35 1 5.9066 0.8504 0.8905 36 1 8.1435 -0.3607 0.0004 37 1 9.9592 -3.4602 -0.9708 38 1 9.8230 -1.6803 -1.3066 39 1 12.5495 -1.1387 1.5139 40 1 14.6363 -4.8412 2.0961 41 1 12.5911 -6.0732 1.5048 42 1 10.5354 -4.8506 0.9307 43 1 8.4343 -2.3426 2.2006 44 1 8.9804 -3.9273 1.4995 45 1 5.1386 2.5840 0.0019 46 1 3.7908 4.6434 -0.0086 47 1 0.4726 4.8942 0.8905 48 1 -0.2797 5.6901 -1.2323 49 1 3.0767 6.3415 1.2260 50 1 3.0997 6.3252 -1.2067 51 1 0.2146 2.3196 0.0000 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14329782_60476.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:46:15 Heat of formation + Delta-G solvation = -16.217575 kcal Electronic energy + Delta-G solvation = -34459.131389 eV Core-core repulsion = 29678.550955 eV Total energy + Delta-G solvation = -4780.580434 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 395.161 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -41.95611 -41.55391 -40.60096 -39.60104 -38.98163 -38.68457 -37.49444 -37.03442 -34.72790 -32.35456 -32.24732 -31.96640 -31.56940 -29.58935 -28.49455 -26.66679 -26.35216 -25.97212 -24.86771 -23.76063 -22.84591 -22.56737 -21.85633 -20.76050 -19.84841 -18.98915 -18.59190 -18.37169 -18.19199 -17.60650 -17.58248 -17.26612 -16.99026 -16.68279 -16.58688 -16.29667 -15.90933 -15.86714 -15.57668 -15.47894 -15.45141 -15.17685 -14.89066 -14.58878 -14.36550 -14.21154 -14.18022 -14.04946 -14.01807 -13.80510 -13.62620 -13.57402 -13.40972 -12.98957 -12.83143 -12.79252 -12.50310 -12.42492 -12.32115 -12.24118 -12.11412 -11.83596 -11.76733 -11.68718 -11.22962 -11.05034 -10.32128 -10.16564 -9.91912 -9.88755 -9.67053 -9.02055 -4.89979 -0.19826 0.04833 0.11346 0.36756 1.32453 1.39727 1.40666 1.56166 1.68277 1.90400 1.99129 2.22567 2.41037 2.50104 2.81673 2.85195 3.36536 3.45933 3.48829 3.65346 3.70151 3.70312 3.75627 3.84672 3.92596 3.93412 3.99073 4.04856 4.11429 4.16734 4.17881 4.19153 4.28338 4.30269 4.32008 4.47262 4.50189 4.51025 4.65173 4.68071 4.77206 4.82837 4.86003 4.88356 4.93606 5.00220 5.05154 5.07716 5.17686 5.23723 5.34121 5.41011 5.43583 5.49751 5.66715 5.87457 5.88893 6.35613 6.38709 6.46062 6.91806 7.10600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.331 6.331 3 C 0.085 3.915 4 C 0.085 3.915 5 O -0.309 6.309 6 C 0.032 3.968 7 C 0.517 3.483 8 O -0.569 6.569 9 N -0.692 5.692 10 C 0.110 3.890 11 H 0.083 0.917 12 C -0.123 4.123 13 C -0.065 4.065 14 H 0.115 0.885 15 C -0.074 4.074 16 C -0.067 4.067 17 C -0.046 4.046 18 C 0.277 3.723 19 N -0.474 5.474 20 C -0.076 4.076 21 C -0.117 4.117 22 C -0.084 4.084 23 C -0.143 4.143 24 C -0.160 4.160 25 C -0.134 4.134 26 C -0.085 4.085 27 C -0.080 4.080 28 O -0.565 6.565 29 Si 0.777 3.223 30 C -0.148 4.148 31 H 0.064 0.936 32 H 0.114 0.886 33 H 0.068 0.932 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.421 0.579 37 H 0.106 0.894 38 H 0.089 0.911 39 H 0.142 0.858 40 H 0.139 0.861 41 H 0.154 0.846 42 H 0.148 0.852 43 H 0.068 0.932 44 H 0.103 0.897 45 H 0.172 0.828 46 H 0.132 0.868 47 H 0.094 0.906 48 H 0.404 0.596 49 H -0.283 1.283 50 H -0.294 1.294 51 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.466 4.249 -0.585 5.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.245 6.245 3 C 0.039 3.961 4 C 0.040 3.960 5 O -0.223 6.223 6 C -0.046 4.046 7 C 0.303 3.697 8 O -0.447 6.447 9 N -0.346 5.346 10 C 0.005 3.995 11 H 0.102 0.898 12 C -0.161 4.161 13 C -0.083 4.083 14 H 0.133 0.867 15 C -0.075 4.075 16 C -0.087 4.087 17 C -0.050 4.050 18 C -0.037 4.037 19 N -0.149 5.149 20 C -0.097 4.097 21 C -0.135 4.135 22 C -0.103 4.103 23 C -0.181 4.181 24 C -0.178 4.178 25 C -0.152 4.152 26 C -0.086 4.086 27 C -0.190 4.190 28 O -0.375 6.375 29 Si 0.682 3.318 30 C -0.166 4.166 31 H 0.083 0.917 32 H 0.133 0.867 33 H 0.087 0.913 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.259 0.741 37 H 0.125 0.875 38 H 0.108 0.892 39 H 0.160 0.840 40 H 0.157 0.843 41 H 0.172 0.828 42 H 0.166 0.834 43 H 0.086 0.914 44 H 0.121 0.879 45 H 0.190 0.810 46 H 0.149 0.851 47 H 0.112 0.888 48 H 0.255 0.745 49 H -0.210 1.210 50 H -0.221 1.221 51 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -1.382 3.742 -0.256 3.997 hybrid contribution -0.088 -0.389 0.110 0.413 sum -1.469 3.353 -0.146 3.664 Atomic orbital electron populations 1.23348 0.76457 1.05503 1.02300 1.86196 1.23339 1.26118 1.88878 1.18637 0.89749 0.85813 1.01903 1.18479 0.88422 0.86228 1.02896 1.86224 1.18220 1.28551 1.89267 1.22795 0.79383 0.95651 1.06793 1.20416 0.83124 0.90507 0.75644 1.90775 1.64072 1.39967 1.49847 1.45340 1.04849 1.09906 1.74480 1.21930 0.94380 0.84976 0.98216 0.89835 1.23405 0.91957 1.04645 0.96073 1.21615 0.89934 1.00224 0.96542 0.86661 1.19681 0.94492 0.93875 0.99408 1.21211 0.90500 1.00821 0.96169 1.16106 0.88043 0.92810 1.08032 1.26098 0.92851 0.92532 0.92268 1.81256 1.12464 1.10205 1.11022 1.21411 1.00042 0.91471 0.96755 1.21378 0.91755 1.01660 0.98718 1.21598 0.99020 0.93774 0.95861 1.23589 0.95103 1.02425 0.96979 1.21257 1.02011 0.89469 1.05071 1.20796 0.93234 0.98232 1.02937 1.19496 0.93416 0.94517 1.01150 1.24873 1.00361 1.02128 0.91596 1.86442 1.59314 1.49570 1.42181 0.94287 0.78719 0.82234 0.76553 1.21065 1.00975 0.90068 1.04526 0.91749 0.86732 0.91348 0.85852 0.85703 0.74091 0.87522 0.89218 0.84045 0.84282 0.82831 0.83419 0.91358 0.87867 0.81040 0.85120 0.88818 0.74501 1.21031 1.22136 0.83008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.04 9.81 113.37 1.11 1.15 16 2 O -0.33 -3.91 10.28 -79.61 -0.82 -4.72 16 3 C 0.08 0.86 6.70 22.57 0.15 1.01 16 4 C 0.09 0.72 6.70 22.57 0.15 0.87 16 5 O -0.31 -3.11 9.45 -67.07 -0.63 -3.75 16 6 C 0.03 -0.04 5.22 71.23 0.37 0.34 16 7 C 0.52 1.69 7.91 87.66 0.69 2.38 16 8 O -0.57 -8.74 16.10 16.00 0.26 -8.49 16 9 N -0.69 3.67 5.26 -440.03 -2.32 1.36 16 10 C 0.11 -0.51 4.32 45.52 0.20 -0.31 16 11 H 0.08 0.08 7.46 -2.38 -0.02 0.07 16 12 C -0.12 1.18 7.29 31.12 0.23 1.41 16 13 C -0.06 0.63 3.85 -11.02 -0.04 0.59 16 14 H 0.12 -1.42 8.09 -2.39 -0.02 -1.44 16 15 C -0.07 0.54 5.28 -19.90 -0.11 0.44 16 16 C -0.07 0.34 9.41 22.54 0.21 0.55 16 17 C -0.05 0.08 5.73 -21.36 -0.12 -0.04 16 18 C 0.28 1.25 15.33 88.35 1.35 2.61 16 19 N -0.47 -5.20 18.53 18.98 0.35 -4.85 16 20 C -0.08 0.34 9.76 22.54 0.22 0.56 16 21 C -0.12 0.86 10.03 22.23 0.22 1.09 16 22 C -0.08 0.67 8.62 22.33 0.19 0.86 16 23 C -0.14 0.94 7.25 31.12 0.23 1.17 16 24 C -0.16 -0.40 9.04 22.35 0.20 -0.20 16 25 C -0.13 -0.52 8.66 22.27 0.19 -0.33 16 26 C -0.09 -0.41 5.42 -19.86 -0.11 -0.51 16 27 C -0.08 0.11 2.81 71.23 0.20 0.31 16 28 O -0.57 0.61 12.74 -148.98 -1.90 -1.28 16 29 Si 0.78 -2.94 29.78 68.60 2.04 -0.90 16 30 C -0.15 -0.93 8.60 22.35 0.19 -0.74 16 31 H 0.06 0.03 7.66 -2.39 -0.02 0.01 16 32 H 0.11 -0.09 8.14 -2.39 -0.02 -0.11 16 33 H 0.07 -0.05 7.66 -2.38 -0.02 -0.07 16 34 H 0.12 -0.93 7.67 -2.39 -0.02 -0.94 16 35 H 0.13 -0.98 7.66 -2.39 -0.02 -1.00 16 36 H 0.42 -5.43 8.70 -92.71 -0.81 -6.24 16 37 H 0.11 -1.08 7.73 -2.38 -0.02 -1.10 16 38 H 0.09 -0.98 8.14 -2.39 -0.02 -1.00 16 39 H 0.14 -1.07 8.05 -2.91 -0.02 -1.10 16 40 H 0.14 -0.88 8.06 -2.91 -0.02 -0.90 16 41 H 0.15 -1.72 8.06 -2.91 -0.02 -1.75 16 42 H 0.15 -1.66 6.63 -2.91 -0.02 -1.68 16 43 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 44 H 0.10 -0.79 6.30 -2.39 -0.02 -0.80 16 45 H 0.17 -0.98 6.30 -2.91 -0.02 -1.00 16 46 H 0.13 0.19 4.87 -2.91 -0.01 0.18 16 47 H 0.09 -0.50 7.96 -2.39 -0.02 -0.52 16 48 H 0.40 -4.75 8.74 -74.06 -0.65 -5.39 16 49 H -0.28 -0.24 7.11 99.48 0.71 0.46 16 50 H -0.29 -0.99 7.11 99.48 0.71 -0.29 16 51 H 0.15 0.45 6.30 -2.91 -0.02 0.43 16 Total: 0.00 -36.24 432.44 2.32 -33.92 By element: Atomic # 1 Polarization: -24.09 SS G_CDS: -0.40 Total: -24.49 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: 5.74 Total: 13.20 kcal Atomic # 7 Polarization: -1.53 SS G_CDS: -1.96 Total: -3.49 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -3.09 Total: -18.24 kcal Atomic # 14 Polarization: -2.94 SS G_CDS: 2.04 Total: -0.90 kcal Total: -36.24 2.32 -33.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14329782_60476.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.701 kcal (2) G-P(sol) polarization free energy of solvation -36.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds