Wall clock time and date at job start Sun Mar 7 2021 00:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39607 * 120.15365 * 321.07677 * 3 2 1 5 5 C 1.37966 * 119.84915 * 180.25415 * 4 3 2 6 6 C 1.38346 * 120.14729 * 359.44787 * 5 4 3 7 7 C 1.38385 * 120.30406 * 0.27981 * 6 5 4 8 8 C 1.50697 * 119.92186 * 179.97438 * 7 6 5 9 9 H 1.09002 * 112.85130 * 168.80501 * 8 7 6 10 10 C 1.53778 * 113.61715 * 300.00445 * 8 7 6 11 11 C 1.53774 * 87.08391 * 139.98088 * 10 8 7 12 12 H 1.08997 * 113.61745 * 219.93366 * 11 10 8 13 13 N 1.46501 * 113.61676 * 89.11518 * 11 10 8 14 14 C 1.34776 * 120.00067 * 154.99938 * 13 11 10 15 15 O 1.21631 * 120.00060 * 0.02562 * 14 13 11 16 16 C 1.47192 * 119.99780 * 179.97438 * 14 13 11 17 17 C 1.36003 * 123.46208 * 0.03231 * 16 14 13 18 18 S 1.70453 * 110.81705 * 179.97438 * 17 16 14 19 19 C 1.75503 * 92.44272 * 359.97438 * 18 17 16 20 20 C 1.50701 * 124.70826 * 180.02562 * 19 18 17 21 21 O 1.42906 * 109.46878 * 244.97342 * 20 19 18 22 22 Si 1.86298 * 109.47254 * 4.97135 * 20 19 18 23 23 C 1.32763 * 110.57877 * 359.73529 * 19 18 17 24 24 C 1.53777 * 87.08009 * 334.56781 * 11 10 8 25 25 C 1.37919 * 120.15205 * 359.97438 * 7 6 5 26 26 H 1.08004 * 120.07985 * 359.97438 * 4 3 2 27 27 H 1.08002 * 119.93050 * 179.73249 * 5 4 3 28 28 H 1.08002 * 119.84561 * 180.25896 * 6 5 4 29 29 H 1.09001 * 113.61200 * 254.53297 * 10 8 7 30 30 H 1.08996 * 113.61546 * 25.34588 * 10 8 7 31 31 H 0.97003 * 119.99710 * 335.00376 * 13 11 10 32 32 H 1.08004 * 124.59364 * 359.92952 * 17 16 14 33 33 H 1.09004 * 109.47306 * 124.97705 * 20 19 18 34 34 H 0.96698 * 114.00409 * 59.99834 * 21 20 19 35 35 H 1.48507 * 109.99999 * 180.02562 * 22 20 19 36 36 H 1.48499 * 110.00083 * 301.32037 * 22 20 19 37 37 H 1.08000 * 123.46224 * 180.24852 * 23 19 18 38 38 H 1.09006 * 113.61002 * 270.88144 * 24 11 10 39 39 H 1.08999 * 113.61435 * 139.98684 * 24 11 10 40 40 H 1.08003 * 120.07801 * 180.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2698 -0.9382 0.7584 5 6 4.6494 -0.9285 0.7580 6 6 5.3375 0.0014 -0.0008 7 6 4.6482 0.9313 -0.7593 8 6 5.4064 1.9407 -1.5822 9 1 4.7679 2.4851 -2.2780 10 6 6.3249 2.8499 -0.7488 11 6 7.3561 2.7141 -1.8814 12 1 8.3818 2.6097 -1.5279 13 7 7.2157 3.7297 -2.9279 14 6 8.2785 4.0701 -3.6835 15 8 9.3541 3.5338 -3.4970 16 6 8.1372 5.0901 -4.7353 17 6 6.9694 5.7332 -5.0042 18 16 7.1703 6.8456 -6.2800 19 6 8.8686 6.4431 -6.4635 20 6 9.7942 7.0681 -7.4753 21 8 10.2221 6.0732 -8.4077 22 14 8.8966 8.4248 -8.3832 23 6 9.2263 5.5161 -5.5829 24 6 6.6827 1.3757 -2.2276 25 6 3.2691 0.9362 -0.7639 26 1 2.7339 -1.6676 1.3478 27 1 5.1935 -1.6515 1.3476 28 1 6.4175 0.0019 -0.0008 29 1 5.9418 3.8630 -0.6262 30 1 6.6458 2.4021 0.1917 31 1 6.3577 4.1571 -3.0769 32 1 6.0403 5.5617 -4.4809 33 1 10.6624 7.4850 -6.9649 34 1 9.5001 5.6584 -8.8994 35 1 9.7985 9.0488 -9.3846 36 1 7.6931 7.8750 -9.0573 37 1 10.2278 5.1185 -5.5104 38 1 7.1027 0.5242 -1.6921 39 1 6.5886 1.1985 -3.2990 40 1 2.7323 1.6622 -1.3567 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14329782_6894386.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:46:40 Heat of formation + Delta-G solvation = 52.551618 kcal Electronic energy + Delta-G solvation = -24896.126432 eV Core-core repulsion = 21156.119922 eV Total energy + Delta-G solvation = -3740.006510 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 341.087 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.65789 -40.62221 -39.30796 -38.65888 -37.46446 -37.15294 -34.68389 -32.27365 -32.23085 -31.34764 -26.97400 -26.69805 -26.63801 -25.39597 -24.66257 -22.81118 -22.23447 -20.76999 -20.55988 -19.03949 -18.86399 -18.10783 -17.69426 -17.27569 -16.91955 -16.49778 -16.41210 -16.11079 -15.79691 -15.64449 -15.32451 -15.16290 -14.87515 -14.61386 -14.32363 -14.17144 -14.09133 -13.99472 -13.77756 -13.64895 -13.57746 -13.37358 -12.94610 -12.78901 -12.63660 -12.47789 -12.42924 -11.86071 -11.72578 -11.66229 -11.20185 -11.03309 -10.73529 -10.17619 -9.97442 -9.90280 -9.65647 -9.43754 -5.02886 -0.32177 -0.18529 0.38277 0.40932 0.71489 0.83566 1.23446 1.56109 1.56688 1.91231 1.91856 2.09036 2.27039 2.83078 2.86318 3.31930 3.50552 3.60722 3.72287 3.76312 3.91911 3.94998 3.99446 4.03336 4.19418 4.20776 4.30300 4.33345 4.50981 4.52764 4.71167 4.72647 4.78971 4.84785 4.90814 5.01028 5.03360 5.07060 5.09410 5.18281 5.21594 5.35615 5.43250 5.53423 5.69398 5.90353 6.40116 6.41544 6.48640 7.17460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C 0.276 3.724 3 C -0.046 4.046 4 C -0.076 4.076 5 C -0.117 4.117 6 C -0.084 4.084 7 C -0.074 4.074 8 C -0.065 4.065 9 H 0.113 0.887 10 C -0.123 4.123 11 C 0.110 3.890 12 H 0.086 0.914 13 N -0.693 5.693 14 C 0.578 3.422 15 O -0.583 6.583 16 C -0.182 4.182 17 C -0.189 4.189 18 S 0.246 5.754 19 C -0.246 4.246 20 C -0.047 4.047 21 O -0.545 6.545 22 Si 0.728 3.272 23 C -0.075 4.075 24 C -0.143 4.143 25 C -0.067 4.067 26 H 0.139 0.861 27 H 0.154 0.846 28 H 0.149 0.851 29 H 0.088 0.912 30 H 0.108 0.892 31 H 0.415 0.585 32 H 0.206 0.794 33 H 0.129 0.871 34 H 0.388 0.612 35 H -0.278 1.278 36 H -0.250 1.250 37 H 0.132 0.868 38 H 0.104 0.896 39 H 0.065 0.935 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.825 3.671 1.355 3.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.150 5.150 2 C -0.038 4.038 3 C -0.049 4.049 4 C -0.097 4.097 5 C -0.135 4.135 6 C -0.102 4.102 7 C -0.074 4.074 8 C -0.083 4.083 9 H 0.131 0.869 10 C -0.161 4.161 11 C 0.005 3.995 12 H 0.104 0.896 13 N -0.345 5.345 14 C 0.365 3.635 15 O -0.464 6.464 16 C -0.200 4.200 17 C -0.327 4.327 18 S 0.512 5.488 19 C -0.363 4.363 20 C -0.157 4.157 21 O -0.353 6.353 22 Si 0.629 3.371 23 C -0.104 4.104 24 C -0.181 4.181 25 C -0.087 4.087 26 H 0.157 0.843 27 H 0.172 0.828 28 H 0.166 0.834 29 H 0.107 0.893 30 H 0.126 0.874 31 H 0.253 0.747 32 H 0.223 0.777 33 H 0.147 0.853 34 H 0.238 0.762 35 H -0.204 1.204 36 H -0.175 1.175 37 H 0.150 0.850 38 H 0.122 0.878 39 H 0.084 0.916 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.532 4.753 0.222 5.390 hybrid contribution 1.026 -2.212 0.200 2.446 sum -1.505 2.542 0.422 2.984 Atomic orbital electron populations 1.81322 1.13786 1.09706 1.10150 1.26164 0.93085 0.92282 0.92247 1.16100 0.82869 1.01567 1.04407 1.21408 0.95155 0.96545 0.96577 1.21378 0.93141 0.99552 0.99432 1.21599 1.01628 0.93140 0.93856 1.19677 0.92385 0.97250 0.98123 1.21607 0.94644 0.95179 0.96907 0.86864 1.23403 0.94248 1.01226 0.97217 1.21928 1.00402 0.88503 0.88690 0.89622 1.45380 1.12555 1.41408 1.35119 1.17877 0.83671 0.81106 0.80842 1.90796 1.28722 1.56170 1.70715 1.20099 0.94442 1.03381 1.02064 1.26178 1.02408 1.00733 1.03369 1.83047 1.02028 1.36149 1.27533 1.24801 1.00080 1.06003 1.05375 1.24715 1.02308 0.97162 0.91546 1.86615 1.37986 1.55300 1.55437 0.94416 0.78405 0.80173 0.84128 1.21006 0.99451 0.96312 0.93681 1.23590 0.95518 0.97382 1.01617 1.21208 0.94068 0.96725 0.96711 0.84285 0.82812 0.83384 0.89308 0.87405 0.74749 0.77746 0.85335 0.76238 1.20362 1.17466 0.84991 0.87780 0.91607 0.84056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -5.05 18.54 19.01 0.35 -4.70 16 2 C 0.28 1.16 15.33 88.33 1.35 2.52 16 3 C -0.05 0.10 5.73 -21.36 -0.12 -0.03 16 4 C -0.08 0.37 9.76 22.54 0.22 0.59 16 5 C -0.12 0.90 10.03 22.23 0.22 1.12 16 6 C -0.08 0.69 8.60 22.33 0.19 0.89 16 7 C -0.07 0.56 5.28 -19.91 -0.11 0.45 16 8 C -0.07 0.63 3.85 -11.02 -0.04 0.59 16 9 H 0.11 -1.37 8.09 -2.39 -0.02 -1.39 16 10 C -0.12 1.19 7.29 31.12 0.23 1.42 16 11 C 0.11 -0.49 4.32 45.51 0.20 -0.30 16 12 H 0.09 0.05 7.46 -2.39 -0.02 0.03 16 13 N -0.69 2.80 5.23 -443.54 -2.32 0.47 16 14 C 0.58 2.45 7.79 86.60 0.67 3.12 16 15 O -0.58 -8.13 16.40 -4.13 -0.07 -8.20 16 16 C -0.18 -0.16 5.98 -19.87 -0.12 -0.28 16 17 C -0.19 1.22 10.38 67.30 0.70 1.91 16 18 S 0.25 -1.58 20.20 -56.49 -1.14 -2.72 16 19 C -0.25 0.27 5.65 24.51 0.14 0.40 16 20 C -0.05 0.06 2.94 71.24 0.21 0.27 16 21 O -0.54 -1.31 12.88 -148.98 -1.92 -3.23 16 22 Si 0.73 -2.93 30.92 68.60 2.12 -0.81 16 23 C -0.08 -0.26 9.95 22.67 0.23 -0.04 16 24 C -0.14 0.93 7.25 31.12 0.23 1.15 16 25 C -0.07 0.35 9.41 22.54 0.21 0.57 16 26 H 0.14 -0.92 8.06 -2.91 -0.02 -0.94 16 27 H 0.15 -1.78 8.06 -2.91 -0.02 -1.81 16 28 H 0.15 -1.72 6.64 -2.91 -0.02 -1.74 16 29 H 0.09 -0.98 8.14 -2.39 -0.02 -0.99 16 30 H 0.11 -1.13 7.72 -2.39 -0.02 -1.15 16 31 H 0.41 -4.50 7.20 -92.71 -0.67 -5.17 16 32 H 0.21 -2.92 7.01 -2.91 -0.02 -2.94 16 33 H 0.13 -0.28 7.96 -2.39 -0.02 -0.30 16 34 H 0.39 -1.50 8.70 -74.06 -0.64 -2.14 16 35 H -0.28 -0.90 7.11 99.48 0.71 -0.19 16 36 H -0.25 0.54 7.11 99.48 0.71 1.24 16 37 H 0.13 1.00 8.06 -2.91 -0.02 0.98 16 38 H 0.10 -0.81 6.30 -2.38 -0.02 -0.83 16 39 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 40 H 0.14 -1.11 8.05 -2.91 -0.02 -1.13 16 Total: 0.00 -24.84 363.54 1.28 -23.57 By element: Atomic # 1 Polarization: -18.57 SS G_CDS: -0.16 Total: -18.73 kcal Atomic # 6 Polarization: 9.95 SS G_CDS: 4.41 Total: 14.35 kcal Atomic # 7 Polarization: -2.26 SS G_CDS: -1.97 Total: -4.23 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: -1.99 Total: -11.43 kcal Atomic # 14 Polarization: -2.93 SS G_CDS: 2.12 Total: -0.81 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -1.14 Total: -2.72 kcal Total: -24.84 1.28 -23.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14329782_6894386.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.117 kcal (2) G-P(sol) polarization free energy of solvation -24.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds