Wall clock time and date at job start Sun Mar 7 2021 00:46:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 C 1.37936 * 120.07022 * 2 1
4 4 C 1.38384 * 120.14543 * 180.02562 * 3 2 1
5 5 C 1.50702 * 119.85536 * 179.97438 * 4 3 2
6 6 C 1.38338 * 120.28984 * 0.02562 * 4 3 2
7 7 C 1.50707 * 119.92691 * 179.97438 * 6 4 3
8 8 O 1.42897 * 109.47228 * 285.00608 * 7 6 4
9 9 Si 1.86299 * 109.47056 * 165.00288 * 7 6 4
10 10 C 1.37980 * 120.14491 * 359.97438 * 6 4 3
11 11 C 1.39553 * 119.85390 * 359.76511 * 10 6 4
12 12 C 1.47845 * 120.14765 * 180.25349 * 11 10 6
13 13 O 1.21549 * 120.00300 * 186.30154 * 12 11 10
14 14 N 1.34773 * 119.99676 * 6.29571 * 12 11 10
15 15 C 1.46508 * 120.00144 * 179.97438 * 14 12 11
16 16 H 1.09001 * 112.84434 * 23.80307 * 15 14 12
17 17 C 1.53779 * 113.61362 * 155.00210 * 15 14 12
18 18 C 1.53782 * 87.08024 * 89.11956 * 17 15 14
19 19 H 1.08993 * 113.61240 * 270.87991 * 18 17 15
20 20 C 1.50702 * 113.61486 * 140.06347 * 18 17 15
21 21 C 1.37928 * 119.92439 * 120.00024 * 20 18 17
22 22 C 1.39654 * 119.84390 * 179.97438 * 21 20 18
23 23 C 1.43199 * 120.14375 * 180.02562 * 22 21 20
24 24 N 9.34112 * 103.79502 * 176.73952 * 9 1 2
25 25 C 1.39612 * 119.69909 * 359.97438 * 22 21 20
26 26 C 1.37967 * 119.84706 * 0.02562 * 25 22 21
27 27 C 1.38339 * 120.15300 * 359.73995 * 26 25 22
28 28 C 1.53778 * 113.61480 * 252.50121 * 15 14 12
29 29 H 1.08997 * 109.47516 * 96.55534 * 1 2 3
30 30 H 1.09000 * 109.47243 * 336.54848 * 1 2 3
31 31 H 1.09002 * 109.46734 * 216.56139 * 1 2 3
32 32 H 1.08005 * 119.92912 * 359.97438 * 3 2 1
33 33 H 1.09007 * 109.46818 * 90.00272 * 5 4 3
34 34 H 1.09000 * 109.46872 * 209.99842 * 5 4 3
35 35 H 1.08997 * 109.46997 * 330.00647 * 5 4 3
36 36 H 1.09003 * 109.46526 * 45.00215 * 7 6 4
37 37 H 0.96703 * 113.99676 * 299.99392 * 8 7 6
38 38 H 1.48495 * 109.99874 * 58.68176 * 9 7 6
39 39 H 1.48500 * 109.99851 * 180.02562 * 9 7 6
40 40 H 1.08000 * 120.06914 * 180.02562 * 10 6 4
41 41 H 0.97001 * 120.00459 * 0.02562 * 14 12 11
42 42 H 1.09002 * 113.61296 * 203.66253 * 17 15 14
43 43 H 1.08993 * 113.61490 * 334.56762 * 17 15 14
44 44 H 1.07996 * 120.07488 * 359.95011 * 21 20 18
45 45 H 1.08000 * 120.07437 * 179.97438 * 25 22 21
46 46 H 1.08001 * 119.92351 * 179.97438 * 26 25 22
47 47 H 1.07998 * 119.84689 * 180.27551 * 27 26 25
48 48 H 1.09002 * 113.61497 * 25.43145 * 28 15 14
49 49 H 1.09001 * 113.61507 * 156.33300 * 28 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1981 1.1937 0.0000
4 6 3.5819 1.1955 -0.0005
5 6 4.3304 2.5035 -0.0011
6 6 4.2813 0.0019 -0.0016
7 6 5.7883 0.0134 -0.0028
8 8 6.2609 0.3665 -1.3043
9 14 6.4226 -1.6786 0.4505
10 6 3.6020 -1.1991 -0.0016
11 6 2.2065 -1.2080 0.0044
12 6 1.4722 -2.4911 0.0101
13 8 0.2617 -2.4992 -0.1002
14 7 2.1450 -3.6520 0.1375
15 6 1.4173 -4.9236 0.1437
16 1 0.4504 -4.8603 -0.3557
17 6 2.2676 -6.1221 -0.3095
18 6 2.6770 -6.2881 1.1635
19 1 3.5627 -5.7152 1.4377
20 6 2.7474 -7.7250 1.6122
21 6 3.9366 -8.2413 2.0830
22 6 3.9998 -9.5730 2.4989
23 6 5.2310 -10.1155 2.9893
24 7 6.2068 -10.5505 3.3658
25 6 2.8571 -10.3725 2.4354
26 6 1.6741 -9.8431 1.9623
27 6 1.6173 -8.5218 1.5565
28 6 1.3554 -5.5911 1.5276
29 1 -0.3634 -0.1173 -1.0209
30 1 -0.3634 0.9428 0.4090
31 1 -0.3633 -0.8255 0.6122
32 1 1.6581 2.1291 -0.0004
33 1 4.5113 2.8191 1.0265
34 1 5.2832 2.3767 -0.5153
35 1 3.7382 3.2608 -0.5148
36 1 6.1465 0.7426 0.7240
37 1 5.9797 -0.2403 -2.0028
38 1 5.9150 -2.6866 -0.5146
39 1 7.9076 -1.6803 0.4535
40 1 4.1492 -2.1302 -0.0020
41 1 3.1109 -3.6456 0.2258
42 1 1.6786 -6.9542 -0.6954
43 1 3.0946 -5.8479 -0.9643
44 1 4.8168 -7.6173 2.1295
45 1 2.8993 -11.4033 2.7550
46 1 0.7895 -10.4606 1.9122
47 1 0.6876 -8.1112 1.1912
48 1 1.4462 -4.8884 2.3559
49 1 0.5171 -6.2781 1.6440
There are 66 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 66
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
s_22_14329782_9599494.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 7 2021 00:46:49
Heat of formation + Delta-G solvation = 46.812780 kcal
Electronic energy + Delta-G solvation = -31235.190273 eV
Core-core repulsion = 27094.707424 eV
Total energy + Delta-G solvation = -4140.482849 eV
No. of doubly occupied orbitals = 66
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 363.162 amu
Computer time = 1.33 seconds
Orbital eigenvalues (eV)
-41.87835 -41.10128 -40.07077 -38.99815 -37.72603 -37.47671 -34.97098 -34.37604
-33.21592 -32.21648 -31.81560 -29.30203 -28.53049 -26.62077 -26.21000 -25.54415
-24.83463 -23.70437 -22.98300 -22.46665 -21.08269 -20.56382 -19.16208 -18.90782
-17.61251 -17.39116 -17.25142 -16.76891 -16.48724 -16.30342 -16.28299 -16.05197
-15.91901 -15.48135 -15.22090 -15.13106 -14.83516 -14.66833 -14.58151 -14.36746
-14.14792 -14.08323 -13.97893 -13.86143 -13.76481 -13.39792 -13.36531 -13.05795
-12.94586 -12.81892 -12.73568 -12.66796 -12.51627 -12.45271 -11.94772 -11.79661
-11.69536 -11.63462 -11.17282 -10.68246 -10.56794 -10.12950 -9.89127 -9.87872
-9.64655 -9.57530 -4.94818 -0.22947 -0.16433 0.18707 0.40058 1.28552
1.53096 1.59871 1.74948 1.93975 1.95749 2.07519 2.65779 2.85302
2.88326 3.41922 3.49962 3.51654 3.63372 3.70345 3.74877 3.80136
3.84339 3.96583 4.04681 4.17377 4.21674 4.22284 4.25721 4.35409
4.52037 4.54565 4.56033 4.59215 4.70278 4.74028 4.78618 4.80016
4.83670 4.87352 4.90881 4.95774 5.02844 5.06687 5.08886 5.13302
5.18483 5.22604 5.30405 5.37442 5.45311 5.50676 5.52668 5.57275
5.72358 5.82790 5.92287 6.41455 6.47462 6.48955 7.17626
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.119 4.119
2 C -0.025 4.025
3 C -0.137 4.137
4 C -0.029 4.029
5 C -0.127 4.127
6 C -0.134 4.134
7 C -0.080 4.080
8 O -0.543 6.543
9 Si 0.753 3.247
10 C -0.073 4.073
11 C -0.158 4.158
12 C 0.560 3.440
13 O -0.560 6.560
14 N -0.701 5.701
15 C 0.111 3.889
16 H 0.091 0.909
17 C -0.128 4.128
18 C -0.069 4.069
19 H 0.113 0.887
20 C -0.073 4.073
21 C -0.068 4.068
22 C -0.047 4.047
23 C 0.277 3.723
24 N -0.474 5.474
25 C -0.077 4.077
26 C -0.117 4.117
27 C -0.083 4.083
28 C -0.139 4.139
29 H 0.068 0.932
30 H 0.072 0.928
31 H 0.081 0.919
32 H 0.144 0.856
33 H 0.087 0.913
34 H 0.076 0.924
35 H 0.074 0.926
36 H 0.125 0.875
37 H 0.386 0.614
38 H -0.261 1.261
39 H -0.304 1.304
40 H 0.147 0.853
41 H 0.410 0.590
42 H 0.109 0.891
43 H 0.082 0.918
44 H 0.141 0.859
45 H 0.139 0.861
46 H 0.154 0.846
47 H 0.150 0.850
48 H 0.070 0.930
49 H 0.106 0.894
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.109 1.416 -0.065 3.417
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.175 4.175
2 C -0.026 4.026
3 C -0.155 4.155
4 C -0.030 4.030
5 C -0.183 4.183
6 C -0.134 4.134
7 C -0.189 4.189
8 O -0.351 6.351
9 Si 0.657 3.343
10 C -0.091 4.091
11 C -0.161 4.161
12 C 0.349 3.651
13 O -0.440 6.440
14 N -0.352 5.352
15 C 0.006 3.994
16 H 0.109 0.891
17 C -0.166 4.166
18 C -0.087 4.087
19 H 0.131 0.869
20 C -0.073 4.073
21 C -0.088 4.088
22 C -0.050 4.050
23 C -0.037 4.037
24 N -0.150 5.150
25 C -0.097 4.097
26 C -0.135 4.135
27 C -0.101 4.101
28 C -0.178 4.178
29 H 0.086 0.914
30 H 0.091 0.909
31 H 0.099 0.901
32 H 0.161 0.839
33 H 0.106 0.894
34 H 0.095 0.905
35 H 0.093 0.907
36 H 0.143 0.857
37 H 0.235 0.765
38 H -0.187 1.187
39 H -0.232 1.232
40 H 0.164 0.836
41 H 0.247 0.753
42 H 0.127 0.873
43 H 0.100 0.900
44 H 0.159 0.841
45 H 0.156 0.844
46 H 0.172 0.828
47 H 0.168 0.832
48 H 0.089 0.911
49 H 0.124 0.876
Dipole moment (debyes) X Y Z Total
from point charges -1.713 0.511 0.516 1.861
hybrid contribution 0.148 0.309 -1.214 1.262
sum -1.565 0.819 -0.698 1.899
Atomic orbital electron populations
1.21033 0.90118 1.03344 1.03015 1.20221 0.96978 0.91986 0.93387
1.21193 0.93708 0.98013 1.02579 1.20223 0.93432 0.95902 0.93430
1.21008 1.00707 0.93006 1.03609 1.20073 0.96326 0.92679 1.04347
1.25166 0.91255 1.14277 0.88168 1.86583 1.76437 1.55040 1.17063
0.94301 0.77561 0.73603 0.88823 1.21309 0.92625 0.98380 0.96806
1.19662 0.93709 0.92867 1.09878 1.18382 0.86770 0.84300 0.75609
1.90735 1.15002 1.87414 1.50852 1.45548 1.11085 1.04850 1.73728
1.21936 0.96777 0.82332 0.98328 0.89103 1.23434 1.00136 0.97195
0.95814 1.21642 0.99486 0.91362 0.96246 0.86899 1.19675 0.92725
0.96024 0.98914 1.21223 0.99036 0.92683 0.95881 1.16111 0.87264
0.95295 1.06373 1.26039 0.92876 0.92457 0.92356 1.81181 1.12780
1.09674 1.11333 1.21403 0.91340 1.00056 0.96932 1.21376 0.97999
0.95916 0.98213 1.21597 0.98908 0.93437 0.96174 1.23572 0.97876
0.99425 0.96883 0.91365 0.90885 0.90061 0.83855 0.89405 0.90466
0.90696 0.85741 0.76504 1.18660 1.23174 0.83632 0.75285 0.87299
0.89977 0.84086 0.84351 0.82807 0.83243 0.91096 0.87606
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -0.40 8.75 71.23 0.62 0.22 16
2 C -0.02 -0.07 5.91 -19.61 -0.12 -0.18 16
3 C -0.14 -0.02 9.31 22.23 0.21 0.19 16
4 C -0.03 0.03 5.89 -19.81 -0.12 -0.09 16
5 C -0.13 0.41 9.32 71.24 0.66 1.07 16
6 C -0.13 0.33 5.26 -19.90 -0.10 0.22 16
7 C -0.08 0.31 1.88 71.24 0.13 0.44 16
8 O -0.54 0.50 11.92 -148.98 -1.78 -1.28 16
9 Si 0.75 -4.36 30.24 68.60 2.07 -2.29 16
10 C -0.07 0.22 8.13 22.53 0.18 0.41 16
11 C -0.16 -0.22 5.87 -20.09 -0.12 -0.34 16
12 C 0.56 1.56 7.70 86.79 0.67 2.23 16
13 O -0.56 -5.26 12.94 -3.87 -0.05 -5.31 16
14 N -0.70 2.72 5.21 -442.90 -2.31 0.41 16
15 C 0.11 -0.58 4.32 45.51 0.20 -0.39 16
16 H 0.09 -0.10 7.46 -2.39 -0.02 -0.12 16
17 C -0.13 1.19 7.29 31.12 0.23 1.42 16
18 C -0.07 0.67 3.85 -11.01 -0.04 0.63 16
19 H 0.11 -1.34 8.09 -2.39 -0.02 -1.36 16
20 C -0.07 0.56 5.28 -19.90 -0.11 0.46 16
21 C -0.07 0.35 9.41 22.54 0.21 0.57 16
22 C -0.05 0.09 5.73 -21.36 -0.12 -0.03 16
23 C 0.28 1.20 15.32 88.37 1.35 2.55 16
24 N -0.47 -5.11 18.52 18.96 0.35 -4.76 16
25 C -0.08 0.37 9.76 22.54 0.22 0.59 16
26 C -0.12 0.93 10.03 22.23 0.22 1.15 16
27 C -0.08 0.72 8.62 22.33 0.19 0.91 16
28 C -0.14 1.06 7.25 31.12 0.23 1.29 16
29 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16
30 H 0.07 0.00 8.04 -2.39 -0.02 -0.02 16
31 H 0.08 0.56 5.83 -2.39 -0.01 0.55 16
32 H 0.14 -0.42 8.06 -2.91 -0.02 -0.44 16
33 H 0.09 -0.47 8.14 -2.38 -0.02 -0.49 16
34 H 0.08 -0.11 6.18 -2.39 -0.01 -0.13 16
35 H 0.07 -0.30 8.08 -2.39 -0.02 -0.32 16
36 H 0.12 -0.63 7.38 -2.39 -0.02 -0.65 16
37 H 0.39 -2.37 8.70 -74.06 -0.64 -3.01 16
38 H -0.26 1.37 6.68 99.48 0.66 2.03 16
39 H -0.30 -0.89 7.11 99.48 0.71 -0.19 16
40 H 0.15 -1.16 3.25 -2.91 -0.01 -1.16 16
41 H 0.41 -3.61 6.78 -92.71 -0.63 -4.24 16
42 H 0.11 -1.14 7.73 -2.39 -0.02 -1.16 16
43 H 0.08 -0.79 8.14 -2.39 -0.02 -0.81 16
44 H 0.14 -1.08 8.05 -2.91 -0.02 -1.10 16
45 H 0.14 -0.91 8.06 -2.91 -0.02 -0.94 16
46 H 0.15 -1.83 8.06 -2.91 -0.02 -1.85 16
47 H 0.15 -1.84 6.63 -2.91 -0.02 -1.86 16
48 H 0.07 -0.39 8.14 -2.39 -0.02 -0.41 16
49 H 0.11 -0.98 6.30 -2.39 -0.02 -0.99 16
Total: 0.00 -20.91 402.73 2.64 -18.27
By element:
Atomic # 1 Polarization: -18.11 SS G_CDS: -0.26 Total: -18.36 kcal
Atomic # 6 Polarization: 8.72 SS G_CDS: 4.61 Total: 13.33 kcal
Atomic # 7 Polarization: -2.39 SS G_CDS: -1.96 Total: -4.35 kcal
Atomic # 8 Polarization: -4.76 SS G_CDS: -1.83 Total: -6.59 kcal
Atomic # 14 Polarization: -4.36 SS G_CDS: 2.07 Total: -2.29 kcal
Total: -20.91 2.64 -18.27 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_22_14329782_9599494.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 65.081 kcal
(2) G-P(sol) polarization free energy of solvation -20.909 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.172 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.641 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.268 kcal
(6) G-S(sol) free energy of system = (1) + (5) 46.813 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.34 seconds