Wall clock time and date at job start Sun Mar 7 2021 02:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.37651 * 125.68116 * 2 1 4 4 C 1.46683 * 126.23064 * 0.02562 * 3 2 1 5 5 O 1.21694 * 119.99785 * 5.30624 * 4 3 2 6 6 N 1.34777 * 120.00002 * 185.02616 * 4 3 2 7 7 C 1.46498 * 119.99967 * 175.25086 * 6 4 3 8 8 C 1.53005 * 109.46958 * 180.02562 * 7 6 4 9 9 C 1.53001 * 109.46753 * 179.97438 * 8 7 6 10 10 H 1.08997 * 112.85461 * 43.80329 * 9 8 7 11 11 C 1.53781 * 113.61129 * 175.00098 * 9 8 7 12 12 C 1.53781 * 87.08025 * 139.97867 * 11 9 8 13 13 H 1.08999 * 113.61258 * 219.93188 * 12 11 9 14 14 F 1.39900 * 113.61554 * 89.11746 * 12 11 9 15 15 C 1.53778 * 87.08395 * 334.56576 * 12 11 9 16 16 C 1.37875 * 107.53749 * 180.29788 * 3 2 1 17 17 C 1.39840 * 107.08267 * 359.57740 * 16 3 2 18 18 C 1.35454 * 107.86096 * 0.42257 * 17 16 3 19 19 C 1.50698 * 125.55915 * 179.77280 * 18 17 16 20 20 O 1.42895 * 109.47117 * 149.95976 * 19 18 17 21 21 Si 1.86303 * 109.47310 * 29.95813 * 19 18 17 22 22 H 1.09002 * 109.46900 * 95.45851 * 1 2 3 23 23 H 1.09000 * 109.47430 * 215.45827 * 1 2 3 24 24 H 1.09001 * 109.47381 * 335.46164 * 1 2 3 25 25 H 0.97003 * 119.99978 * 355.24674 * 6 4 3 26 26 H 1.09003 * 109.46890 * 299.99963 * 7 6 4 27 27 H 1.08997 * 109.47523 * 59.99539 * 7 6 4 28 28 H 1.08996 * 109.46741 * 299.99241 * 8 7 6 29 29 H 1.08991 * 109.47473 * 59.99870 * 8 7 6 30 30 H 1.09007 * 113.60892 * 254.52348 * 11 9 8 31 31 H 1.08995 * 113.61912 * 25.42841 * 11 9 8 32 32 H 1.09000 * 113.61355 * 270.88978 * 15 12 11 33 33 H 1.08997 * 113.61983 * 139.98335 * 15 12 11 34 34 H 1.07993 * 126.45886 * 179.71723 * 16 3 2 35 35 H 1.08000 * 126.06816 * 180.15595 * 17 16 3 36 36 H 1.09006 * 109.47213 * 269.95713 * 19 18 17 37 37 H 0.96704 * 114.00441 * 299.99853 * 20 19 18 38 38 H 1.48505 * 109.99911 * 179.97438 * 21 19 18 39 39 H 1.48495 * 109.99790 * 301.31762 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2678 1.1181 0.0000 4 6 1.8124 2.5124 0.0005 5 8 0.6260 2.7650 0.0985 6 7 2.7084 3.5140 -0.1018 7 6 2.2480 4.9009 -0.2061 8 6 3.4568 5.8331 -0.3102 9 6 2.9759 7.2814 -0.4198 10 1 2.1702 7.5138 0.2766 11 6 4.1172 8.3120 -0.4073 12 6 3.3340 9.0755 -1.4884 13 1 3.9659 9.4933 -2.2721 14 9 2.4247 10.0042 -0.9709 15 6 2.6930 7.7290 -1.8636 16 6 3.5780 0.6888 -0.0068 17 6 3.5522 -0.7094 -0.0011 18 6 2.2554 -1.1009 -0.0006 19 6 1.7709 -2.5279 0.0000 20 8 0.5136 -2.6037 0.6748 21 14 3.0124 -3.6050 0.8771 22 1 -0.3633 -0.0978 -1.0230 23 1 -0.3634 -0.8371 0.5961 24 1 -0.3634 0.9348 0.4268 25 1 3.6581 3.3166 -0.1063 26 1 1.6266 5.0115 -1.0948 27 1 1.6656 5.1579 0.6786 28 1 4.0784 5.7225 0.5783 29 1 4.0388 5.5760 -1.1951 30 1 4.2048 8.8550 0.5338 31 1 5.0693 7.9134 -0.7575 32 1 3.2559 7.1709 -2.6119 33 1 1.6310 7.8012 -2.0983 34 1 4.4583 1.3143 -0.0129 35 1 4.4132 -1.3613 -0.0018 36 1 1.6530 -2.8720 -1.0276 37 1 0.5435 -2.3122 1.5964 38 1 2.5457 -5.0148 0.8850 39 1 4.3324 -3.5102 0.2037 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14412250_10803936.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:32:03 Heat of formation + Delta-G solvation = -45.538572 kcal Electronic energy + Delta-G solvation = -21878.374930 eV Core-core repulsion = 18317.554052 eV Total energy + Delta-G solvation = -3560.820877 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 283.137 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.61440 -42.57086 -40.32161 -39.39776 -37.86807 -36.15698 -33.81951 -32.37674 -30.94155 -27.55686 -27.21406 -26.93844 -25.49424 -23.21924 -22.84837 -21.44634 -20.65801 -20.37726 -18.86175 -18.12308 -17.42085 -17.03450 -16.98966 -16.64702 -16.48092 -16.15210 -15.91637 -15.66773 -15.26850 -15.16301 -14.88845 -14.56382 -14.47808 -14.34118 -13.83357 -13.70342 -13.64240 -13.22467 -13.11191 -12.98664 -12.64690 -12.20343 -12.13040 -12.02617 -11.92325 -11.32782 -11.22797 -10.98372 -10.65701 -10.15986 -9.73182 -9.08517 -5.05861 0.42543 1.09726 1.48368 1.67453 1.70437 1.96612 2.38068 2.41729 3.14734 3.14868 3.19493 3.45758 3.52187 3.55884 3.70863 3.75583 3.98955 4.01656 4.14305 4.29909 4.31438 4.35995 4.43959 4.44877 4.51049 4.53144 4.64142 4.68080 4.78325 4.85068 4.88916 4.97244 4.99097 5.01567 5.14161 5.34852 5.36616 5.69705 5.98589 6.14844 6.30933 6.46114 7.18612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.389 5.389 3 C -0.052 4.052 4 C 0.590 3.410 5 O -0.546 6.546 6 N -0.720 5.720 7 C 0.122 3.878 8 C -0.121 4.121 9 C -0.107 4.107 10 H 0.099 0.901 11 C -0.157 4.157 12 C 0.061 3.939 13 H 0.096 0.904 14 F -0.197 7.197 15 C -0.160 4.160 16 C -0.135 4.135 17 C -0.205 4.205 18 C 0.014 3.986 19 C -0.050 4.050 20 O -0.542 6.542 21 Si 0.724 3.276 22 H 0.072 0.928 23 H 0.104 0.896 24 H 0.104 0.896 25 H 0.403 0.597 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.119 0.881 37 H 0.381 0.619 38 H -0.253 1.253 39 H -0.252 1.252 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.785 -0.716 1.352 5.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.061 5.061 3 C -0.167 4.167 4 C 0.378 3.622 5 O -0.425 6.425 6 N -0.372 5.372 7 C -0.001 4.001 8 C -0.159 4.159 9 C -0.126 4.126 10 H 0.118 0.882 11 C -0.195 4.195 12 C 0.025 3.975 13 H 0.114 0.886 14 F -0.178 7.178 15 C -0.198 4.198 16 C -0.162 4.162 17 C -0.229 4.229 18 C -0.104 4.104 19 C -0.160 4.160 20 O -0.348 6.348 21 Si 0.623 3.377 22 H 0.090 0.910 23 H 0.122 0.878 24 H 0.123 0.877 25 H 0.238 0.762 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.100 0.900 34 H 0.163 0.837 35 H 0.165 0.835 36 H 0.136 0.864 37 H 0.229 0.771 38 H -0.178 1.178 39 H -0.176 1.176 Dipole moment (debyes) X Y Z Total from point charges 3.830 -1.364 0.766 4.137 hybrid contribution 0.155 0.367 -0.665 0.775 sum 3.985 -0.997 0.100 4.109 Atomic orbital electron populations 1.22662 0.75465 1.06573 1.04381 1.43770 1.07037 1.03951 1.51367 1.20036 0.90540 0.87509 1.18567 1.16977 0.85530 0.83555 0.76120 1.90793 1.16402 1.84796 1.50511 1.45623 1.09884 1.06311 1.75406 1.21396 0.96935 0.79076 1.02711 1.21777 0.97327 0.93557 1.03202 1.22510 0.98859 0.93598 0.97596 0.88245 1.23615 0.98473 0.97376 1.00024 1.22383 0.90331 0.87658 0.97159 0.88566 1.92830 1.69050 1.67452 1.88453 1.23693 1.02880 0.95692 0.97519 1.21271 0.94358 0.95164 1.05385 1.20642 0.95062 0.95420 1.11740 1.21082 0.90949 0.89233 1.09139 1.24992 0.93992 0.94620 1.02391 1.86487 1.30230 1.88806 1.29242 0.93988 0.76337 0.77642 0.89689 0.90979 0.87780 0.87708 0.76158 0.91195 0.91043 0.90583 0.90740 0.89955 0.88137 0.88160 0.89983 0.83662 0.83540 0.86365 0.77077 1.17755 1.17605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.06 10.32 59.84 0.62 0.68 16 2 N -0.39 -0.79 3.16 -115.62 -0.37 -1.16 16 3 C -0.05 -0.11 6.89 -81.98 -0.56 -0.68 16 4 C 0.59 1.69 7.77 -12.85 -0.10 1.59 16 5 O -0.55 -3.30 14.55 5.19 0.08 -3.23 16 6 N -0.72 0.31 5.54 -61.62 -0.34 -0.03 16 7 C 0.12 -0.10 5.67 -4.04 -0.02 -0.13 16 8 C -0.12 0.39 5.17 -26.73 -0.14 0.25 16 9 C -0.11 0.23 3.63 -89.80 -0.33 -0.09 16 10 H 0.10 -0.12 8.13 -51.93 -0.42 -0.54 16 11 C -0.16 0.37 7.54 -25.92 -0.20 0.17 16 12 C 0.06 -0.06 5.69 -25.92 -0.15 -0.21 16 13 H 0.10 -0.23 8.14 -51.93 -0.42 -0.66 16 14 F -0.20 -0.50 17.38 2.25 0.04 -0.46 16 15 C -0.16 0.31 7.53 -25.92 -0.20 0.12 16 16 C -0.14 -0.04 10.36 -39.12 -0.41 -0.44 16 17 C -0.20 -0.08 9.37 -39.98 -0.37 -0.45 16 18 C 0.01 0.01 6.14 -81.95 -0.50 -0.49 16 19 C -0.05 0.04 2.99 36.00 0.11 0.14 16 20 O -0.54 0.48 10.10 -35.23 -0.36 0.12 16 21 Si 0.72 -1.45 31.29 -169.99 -5.32 -6.77 16 22 H 0.07 0.11 8.14 -51.93 -0.42 -0.31 16 23 H 0.10 -0.05 5.24 -51.93 -0.27 -0.33 16 24 H 0.10 0.28 5.93 -51.93 -0.31 -0.03 16 25 H 0.40 -1.22 7.37 -40.82 -0.30 -1.52 16 26 H 0.07 0.01 8.14 -51.93 -0.42 -0.41 16 27 H 0.07 0.02 8.14 -51.93 -0.42 -0.40 16 28 H 0.08 -0.28 8.14 -51.93 -0.42 -0.70 16 29 H 0.07 -0.30 7.84 -51.93 -0.41 -0.70 16 30 H 0.08 -0.14 8.14 -51.93 -0.42 -0.56 16 31 H 0.10 -0.38 8.10 -51.93 -0.42 -0.80 16 32 H 0.10 -0.33 7.89 -51.93 -0.41 -0.74 16 33 H 0.08 -0.08 8.14 -51.93 -0.42 -0.51 16 34 H 0.15 -0.38 7.45 -52.49 -0.39 -0.77 16 35 H 0.15 -0.15 6.62 -52.49 -0.35 -0.50 16 36 H 0.12 -0.04 7.96 -51.93 -0.41 -0.45 16 37 H 0.38 -1.63 8.32 45.56 0.38 -1.25 16 38 H -0.25 -0.25 7.11 56.52 0.40 0.15 16 39 H -0.25 0.02 6.76 56.52 0.38 0.40 16 LS Contribution 322.79 15.07 4.86 4.86 Total: 0.00 -7.69 322.79 -9.14 -16.83 By element: Atomic # 1 Polarization: -5.14 SS G_CDS: -5.49 Total: -10.63 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -2.25 Total: 0.46 kcal Atomic # 7 Polarization: -0.48 SS G_CDS: -0.71 Total: -1.19 kcal Atomic # 8 Polarization: -2.82 SS G_CDS: -0.28 Total: -3.10 kcal Atomic # 9 Polarization: -0.50 SS G_CDS: 0.04 Total: -0.46 kcal Atomic # 14 Polarization: -1.45 SS G_CDS: -5.32 Total: -6.77 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -7.69 -9.14 -16.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14412250_10803936.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.713 kcal (2) G-P(sol) polarization free energy of solvation -7.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds