Wall clock time and date at job start Sun Mar 7 2021 02:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.37651 * 125.68116 * 2 1 4 4 C 1.46683 * 126.23064 * 0.02562 * 3 2 1 5 5 O 1.21694 * 119.99785 * 5.30624 * 4 3 2 6 6 N 1.34777 * 120.00002 * 185.02616 * 4 3 2 7 7 C 1.46498 * 119.99967 * 175.25086 * 6 4 3 8 8 C 1.53005 * 109.46958 * 180.02562 * 7 6 4 9 9 C 1.53001 * 109.46753 * 179.97438 * 8 7 6 10 10 H 1.08997 * 112.85461 * 43.80329 * 9 8 7 11 11 C 1.53781 * 113.61129 * 175.00098 * 9 8 7 12 12 C 1.53781 * 87.08025 * 139.97867 * 11 9 8 13 13 H 1.08999 * 113.61258 * 219.93188 * 12 11 9 14 14 F 1.39900 * 113.61554 * 89.11746 * 12 11 9 15 15 C 1.53778 * 87.08395 * 334.56576 * 12 11 9 16 16 C 1.37875 * 107.53749 * 180.29788 * 3 2 1 17 17 C 1.39840 * 107.08267 * 359.57740 * 16 3 2 18 18 C 1.35454 * 107.86096 * 0.42257 * 17 16 3 19 19 C 1.50698 * 125.55915 * 179.77280 * 18 17 16 20 20 O 1.42895 * 109.47117 * 149.95976 * 19 18 17 21 21 Si 1.86303 * 109.47310 * 29.95813 * 19 18 17 22 22 H 1.09002 * 109.46900 * 95.45851 * 1 2 3 23 23 H 1.09000 * 109.47430 * 215.45827 * 1 2 3 24 24 H 1.09001 * 109.47381 * 335.46164 * 1 2 3 25 25 H 0.97003 * 119.99978 * 355.24674 * 6 4 3 26 26 H 1.09003 * 109.46890 * 299.99963 * 7 6 4 27 27 H 1.08997 * 109.47523 * 59.99539 * 7 6 4 28 28 H 1.08996 * 109.46741 * 299.99241 * 8 7 6 29 29 H 1.08991 * 109.47473 * 59.99870 * 8 7 6 30 30 H 1.09007 * 113.60892 * 254.52348 * 11 9 8 31 31 H 1.08995 * 113.61912 * 25.42841 * 11 9 8 32 32 H 1.09000 * 113.61355 * 270.88978 * 15 12 11 33 33 H 1.08997 * 113.61983 * 139.98335 * 15 12 11 34 34 H 1.07993 * 126.45886 * 179.71723 * 16 3 2 35 35 H 1.08000 * 126.06816 * 180.15595 * 17 16 3 36 36 H 1.09006 * 109.47213 * 269.95713 * 19 18 17 37 37 H 0.96704 * 114.00441 * 299.99853 * 20 19 18 38 38 H 1.48505 * 109.99911 * 179.97438 * 21 19 18 39 39 H 1.48495 * 109.99790 * 301.31762 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2678 1.1181 0.0000 4 6 1.8124 2.5124 0.0005 5 8 0.6260 2.7650 0.0985 6 7 2.7084 3.5140 -0.1018 7 6 2.2480 4.9009 -0.2061 8 6 3.4568 5.8331 -0.3102 9 6 2.9759 7.2814 -0.4198 10 1 2.1702 7.5138 0.2766 11 6 4.1172 8.3120 -0.4073 12 6 3.3340 9.0755 -1.4884 13 1 3.9659 9.4933 -2.2721 14 9 2.4247 10.0042 -0.9709 15 6 2.6930 7.7290 -1.8636 16 6 3.5780 0.6888 -0.0068 17 6 3.5522 -0.7094 -0.0011 18 6 2.2554 -1.1009 -0.0006 19 6 1.7709 -2.5279 0.0000 20 8 0.5136 -2.6037 0.6748 21 14 3.0124 -3.6050 0.8771 22 1 -0.3633 -0.0978 -1.0230 23 1 -0.3634 -0.8371 0.5961 24 1 -0.3634 0.9348 0.4268 25 1 3.6581 3.3166 -0.1063 26 1 1.6266 5.0115 -1.0948 27 1 1.6656 5.1579 0.6786 28 1 4.0784 5.7225 0.5783 29 1 4.0388 5.5760 -1.1951 30 1 4.2048 8.8550 0.5338 31 1 5.0693 7.9134 -0.7575 32 1 3.2559 7.1709 -2.6119 33 1 1.6310 7.8012 -2.0983 34 1 4.4583 1.3143 -0.0129 35 1 4.4132 -1.3613 -0.0018 36 1 1.6530 -2.8720 -1.0276 37 1 0.5435 -2.3122 1.5964 38 1 2.5457 -5.0148 0.8850 39 1 4.3324 -3.5102 0.2037 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14412250_10803936.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:32:02 Heat of formation + Delta-G solvation = -43.483757 kcal Electronic energy + Delta-G solvation = -21878.285826 eV Core-core repulsion = 18317.554052 eV Total energy + Delta-G solvation = -3560.731774 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 283.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.66972 -42.61460 -40.40645 -39.31364 -37.80487 -36.23655 -33.86209 -32.37077 -30.89951 -27.58798 -27.21979 -26.78482 -25.44211 -23.19936 -22.80294 -21.48056 -20.61142 -20.33890 -18.88710 -18.09720 -17.40415 -17.04538 -17.00591 -16.63592 -16.46383 -16.14069 -15.92083 -15.65958 -15.28719 -15.17801 -14.89295 -14.60969 -14.47411 -14.37043 -13.81028 -13.69587 -13.48239 -13.21116 -13.08954 -13.01279 -12.53759 -12.18316 -12.02267 -11.95622 -11.80139 -11.28323 -11.17332 -10.95969 -10.65373 -10.24515 -9.77318 -9.12382 -4.90195 0.34370 1.18264 1.49250 1.72985 1.75984 2.03612 2.30194 2.35313 3.27626 3.29184 3.35756 3.55120 3.61648 3.67321 3.76317 3.88056 3.98929 4.12126 4.24682 4.31088 4.32271 4.40376 4.44607 4.54212 4.59837 4.72088 4.74540 4.76731 4.83240 4.93763 5.03134 5.03750 5.10755 5.14827 5.19484 5.35471 5.50502 5.70517 5.96401 6.11422 6.45622 6.55605 7.10552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.402 5.402 3 C -0.082 4.082 4 C 0.583 3.417 5 O -0.589 6.589 6 N -0.704 5.704 7 C 0.123 3.877 8 C -0.107 4.107 9 C -0.109 4.109 10 H 0.082 0.918 11 C -0.147 4.147 12 C 0.043 3.957 13 H 0.112 0.888 14 F -0.222 7.222 15 C -0.158 4.158 16 C -0.123 4.123 17 C -0.213 4.213 18 C 0.013 3.987 19 C -0.059 4.059 20 O -0.554 6.554 21 Si 0.813 3.187 22 H 0.063 0.937 23 H 0.120 0.880 24 H 0.087 0.913 25 H 0.418 0.582 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.124 0.876 32 H 0.120 0.880 33 H 0.066 0.934 34 H 0.176 0.824 35 H 0.163 0.837 36 H 0.112 0.888 37 H 0.396 0.604 38 H -0.295 1.295 39 H -0.272 1.272 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.926 -1.236 1.374 7.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.075 5.075 3 C -0.195 4.195 4 C 0.372 3.628 5 O -0.472 6.472 6 N -0.356 5.356 7 C 0.000 4.000 8 C -0.144 4.144 9 C -0.128 4.128 10 H 0.100 0.900 11 C -0.185 4.185 12 C 0.007 3.993 13 H 0.130 0.870 14 F -0.203 7.203 15 C -0.195 4.195 16 C -0.149 4.149 17 C -0.237 4.237 18 C -0.105 4.105 19 C -0.167 4.167 20 O -0.362 6.362 21 Si 0.715 3.285 22 H 0.082 0.918 23 H 0.138 0.862 24 H 0.105 0.895 25 H 0.256 0.744 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.107 0.893 29 H 0.111 0.889 30 H 0.093 0.907 31 H 0.142 0.858 32 H 0.138 0.862 33 H 0.085 0.915 34 H 0.193 0.807 35 H 0.181 0.819 36 H 0.130 0.870 37 H 0.246 0.754 38 H -0.223 1.223 39 H -0.198 1.198 Dipole moment (debyes) X Y Z Total from point charges 6.001 -1.841 0.794 6.327 hybrid contribution -0.523 0.495 -0.702 1.006 sum 5.478 -1.346 0.092 5.642 Atomic orbital electron populations 1.22575 0.75756 1.06268 1.03991 1.43917 1.07157 1.04445 1.51998 1.20189 0.91488 0.87247 1.20580 1.17262 0.85308 0.84476 0.75733 1.90767 1.18198 1.85436 1.52811 1.45527 1.10306 1.05847 1.73926 1.21388 0.97953 0.79355 1.01344 1.21693 0.96220 0.91885 1.04647 1.22469 0.98715 0.94470 0.97119 0.89983 1.23614 0.99060 0.96586 0.99230 1.22740 0.90503 0.87727 0.98289 0.86974 1.92775 1.70117 1.68516 1.88890 1.23731 1.02242 0.95429 0.98136 1.21671 0.94411 0.95530 1.03270 1.20927 0.95305 0.95797 1.11629 1.21419 0.91219 0.89462 1.08386 1.25245 0.94664 0.94197 1.02641 1.86449 1.30347 1.88831 1.30559 0.92917 0.73522 0.73961 0.88106 0.91789 0.86185 0.89451 0.74395 0.92508 0.92692 0.89343 0.88887 0.90700 0.85794 0.86200 0.91493 0.80709 0.81924 0.87031 0.75374 1.22261 1.19784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.23 10.32 127.77 1.32 1.55 16 2 N -0.40 -1.89 3.16 -519.71 -1.64 -3.53 16 3 C -0.08 -0.38 6.89 40.35 0.28 -0.10 16 4 C 0.58 3.95 7.77 86.45 0.67 4.62 16 5 O -0.59 -8.55 14.55 -4.33 -0.06 -8.61 16 6 N -0.70 0.65 5.54 -467.07 -2.59 -1.93 16 7 C 0.12 -0.14 5.67 86.38 0.49 0.35 16 8 C -0.11 0.80 5.17 30.60 0.16 0.96 16 9 C -0.11 0.47 3.63 -10.26 -0.04 0.43 16 10 H 0.08 -0.07 8.13 -2.39 -0.02 -0.09 16 11 C -0.15 0.81 7.54 31.12 0.23 1.04 16 12 C 0.04 -0.08 5.69 31.12 0.18 0.09 16 13 H 0.11 -0.62 8.14 -2.39 -0.02 -0.64 16 14 F -0.22 -1.40 17.38 44.97 0.78 -0.62 16 15 C -0.16 0.61 7.53 31.12 0.23 0.85 16 16 C -0.12 0.09 10.36 22.57 0.23 0.33 16 17 C -0.21 0.12 9.37 22.01 0.21 0.33 16 18 C 0.01 0.02 6.14 41.34 0.25 0.27 16 19 C -0.06 0.10 2.99 71.24 0.21 0.31 16 20 O -0.55 1.02 10.10 -148.98 -1.50 -0.49 16 21 Si 0.81 -3.81 31.29 68.60 2.15 -1.67 16 22 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 23 H 0.12 -0.01 5.24 -2.39 -0.01 -0.02 16 24 H 0.09 0.69 5.93 -2.39 -0.01 0.68 16 25 H 0.42 -3.14 7.37 -92.71 -0.68 -3.82 16 26 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 27 H 0.05 0.13 8.14 -2.39 -0.02 0.11 16 28 H 0.09 -0.82 8.14 -2.39 -0.02 -0.84 16 29 H 0.09 -0.98 7.84 -2.39 -0.02 -1.00 16 30 H 0.07 -0.27 8.14 -2.38 -0.02 -0.29 16 31 H 0.12 -1.25 8.10 -2.39 -0.02 -1.27 16 32 H 0.12 -0.95 7.89 -2.39 -0.02 -0.97 16 33 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 34 H 0.18 -1.38 7.45 -2.91 -0.02 -1.40 16 35 H 0.16 -0.66 6.62 -2.91 -0.02 -0.68 16 36 H 0.11 -0.06 7.96 -2.38 -0.02 -0.07 16 37 H 0.40 -3.53 8.32 -74.05 -0.62 -4.15 16 38 H -0.30 -0.70 7.11 99.48 0.71 0.01 16 39 H -0.27 0.36 6.76 99.48 0.67 1.03 16 Total: 0.00 -20.25 322.79 1.34 -18.91 By element: Atomic # 1 Polarization: -12.88 SS G_CDS: -0.22 Total: -13.09 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: 4.43 Total: 11.03 kcal Atomic # 7 Polarization: -1.23 SS G_CDS: -4.23 Total: -5.46 kcal Atomic # 8 Polarization: -7.53 SS G_CDS: -1.57 Total: -9.10 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.78 Total: -0.62 kcal Atomic # 14 Polarization: -3.81 SS G_CDS: 2.15 Total: -1.67 kcal Total: -20.25 1.34 -18.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14412250_10803936.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.573 kcal (2) G-P(sol) polarization free energy of solvation -20.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds