Wall clock time and date at job start Sun Mar 7 2021 02:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86298 * 109.47116 * 2 1 4 4 C 1.50695 * 109.47120 * 239.99630 * 2 1 3 5 5 C 1.36448 * 120.30185 * 240.25486 * 4 2 1 6 6 C 1.40093 * 119.26067 * 180.29259 * 5 4 2 7 7 C 1.40849 * 132.86965 * 179.73008 * 6 5 4 8 8 C 1.46576 * 126.57715 * 359.96304 * 7 6 5 9 9 O 1.21722 * 119.99985 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99848 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99829 * 180.02562 * 10 8 7 12 12 C 1.53007 * 109.47078 * 179.97438 * 11 10 8 13 13 C 1.52999 * 109.47183 * 179.97438 * 12 11 10 14 14 H 1.09000 * 112.84823 * 43.80503 * 13 12 11 15 15 C 1.53778 * 113.61604 * 175.00231 * 13 12 11 16 16 C 1.53779 * 87.08288 * 139.98316 * 15 13 12 17 17 H 1.09003 * 113.60983 * 219.93645 * 16 15 13 18 18 F 1.39899 * 113.61639 * 89.11606 * 16 15 13 19 19 C 1.53781 * 87.08092 * 334.56568 * 16 15 13 20 20 C 1.40550 * 106.84508 * 179.97438 * 7 6 5 21 21 N 1.30749 * 108.73954 * 0.02562 * 20 7 6 22 22 N 1.36575 * 120.22736 * 359.70475 * 6 5 4 23 23 C 1.36242 * 120.08090 * 0.02562 * 22 6 5 24 24 C 1.35193 * 120.70617 * 359.97438 * 23 22 6 25 25 H 0.96700 * 113.99806 * 60.00110 * 1 2 3 26 26 H 1.09006 * 109.46863 * 120.00008 * 2 1 3 27 27 H 1.48501 * 109.99902 * 60.00204 * 3 2 1 28 28 H 1.48503 * 109.99741 * 181.31704 * 3 2 1 29 29 H 1.08008 * 120.36715 * 359.97438 * 5 4 2 30 30 H 0.97004 * 120.00165 * 359.97438 * 10 8 7 31 31 H 1.09003 * 109.46928 * 299.98834 * 11 10 8 32 32 H 1.08994 * 109.47471 * 59.99552 * 11 10 8 33 33 H 1.08995 * 109.46873 * 299.99774 * 12 11 10 34 34 H 1.09003 * 109.46751 * 60.00008 * 12 11 10 35 35 H 1.09001 * 113.60816 * 254.53221 * 15 13 12 36 36 H 1.08996 * 113.61388 * 25.42646 * 15 13 12 37 37 H 1.08998 * 113.61631 * 270.88593 * 19 16 15 38 38 H 1.08994 * 113.61321 * 139.98340 * 19 16 15 39 39 H 1.07992 * 125.63280 * 179.97438 * 20 7 6 40 40 H 1.08000 * 119.65193 * 179.97438 * 23 22 6 41 41 H 1.08002 * 119.83776 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 2.7119 -1.8234 -1.1123 6 6 3.1720 -2.4631 -2.2706 7 6 3.9776 -3.5989 -2.4822 8 6 4.5753 -4.4505 -1.4497 9 8 4.3920 -4.1998 -0.2728 10 7 5.3287 -5.5105 -1.8036 11 6 5.9256 -6.3620 -0.7716 12 6 6.7246 -7.4849 -1.4363 13 6 7.3486 -8.3738 -0.3586 14 1 6.6568 -8.6062 0.4510 15 6 8.0747 -9.6069 -0.9216 16 6 9.1564 -9.3582 0.1428 17 1 10.1714 -9.5210 -0.2199 18 9 8.9044 -10.0017 1.3591 19 6 8.7233 -7.8827 0.1251 20 6 4.0986 -3.7589 -3.8733 21 7 3.4276 -2.8059 -4.4657 22 7 2.8362 -1.9793 -3.5028 23 6 2.0517 -0.8706 -3.6105 24 6 1.5964 -0.2371 -2.5064 25 1 -0.3933 0.4417 -0.7651 26 1 1.7923 -0.5139 0.8900 27 1 1.5615 2.4678 1.2085 28 1 3.5346 1.7702 -0.0321 29 1 2.9763 -2.2038 -0.1366 30 1 5.4750 -5.7102 -2.7415 31 1 6.5892 -5.7644 -0.1466 32 1 5.1368 -6.7934 -0.1555 33 1 6.0608 -8.0824 -2.0611 34 1 7.5135 -7.0537 -2.0527 35 1 7.5276 -10.5387 -0.7786 36 1 8.4295 -9.4758 -1.9438 37 1 9.2555 -7.2802 -0.6110 38 1 8.6999 -7.4227 1.1129 39 1 4.6548 -4.5396 -4.3708 40 1 1.7908 -0.4937 -4.5884 41 1 0.9758 0.6409 -2.6081 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14412250_11618758.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:32:06 Heat of formation + Delta-G solvation = 5.790903 kcal Electronic energy + Delta-G solvation = -25684.588362 eV Core-core repulsion = 21675.888965 eV Total energy + Delta-G solvation = -4008.699397 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -48.68102 -43.31838 -40.54222 -39.41986 -39.22243 -37.21567 -36.06383 -34.23926 -32.14184 -32.02006 -30.10950 -27.43788 -26.83698 -26.03006 -24.82606 -23.66265 -23.09682 -22.66953 -21.32145 -20.42346 -19.13438 -18.51018 -17.87006 -17.57515 -17.26383 -17.06857 -16.90977 -16.59937 -16.55231 -16.30727 -15.91412 -15.85657 -15.40534 -15.31699 -14.93149 -14.50675 -14.49711 -14.24308 -14.02465 -13.78587 -13.51783 -13.46894 -13.14976 -13.08827 -12.53469 -12.41314 -12.24664 -12.03022 -11.94539 -11.80307 -11.58417 -11.22910 -11.15456 -10.89285 -10.79394 -10.27343 -10.16851 -8.81619 -5.08223 -0.58461 -0.11873 0.99078 1.04276 1.19433 1.67222 1.95365 2.06722 2.21196 2.45756 3.07297 3.22700 3.28429 3.35115 3.45555 3.59364 3.61372 3.71296 3.73795 3.86633 3.87738 3.94411 4.10538 4.19343 4.26281 4.37125 4.39218 4.45235 4.59740 4.61385 4.72275 4.73583 4.80821 4.82782 4.93786 5.02476 5.08951 5.13719 5.15460 5.19296 5.27649 5.44028 5.49474 5.66672 6.27563 6.57371 6.76306 7.25534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.078 4.078 3 Si 0.819 3.181 4 C -0.053 4.053 5 C -0.137 4.137 6 C 0.150 3.850 7 C -0.349 4.349 8 C 0.593 3.407 9 O -0.600 6.600 10 N -0.714 5.714 11 C 0.123 3.877 12 C -0.106 4.106 13 C -0.110 4.110 14 H 0.080 0.920 15 C -0.147 4.147 16 C 0.044 3.956 17 H 0.114 0.886 18 F -0.222 7.222 19 C -0.158 4.158 20 C 0.133 3.867 21 N -0.337 5.337 22 N -0.273 5.273 23 C 0.116 3.884 24 C -0.146 4.146 25 H 0.401 0.599 26 H 0.104 0.896 27 H -0.290 1.290 28 H -0.303 1.303 29 H 0.135 0.865 30 H 0.415 0.585 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.124 0.876 37 H 0.120 0.880 38 H 0.065 0.935 39 H 0.236 0.764 40 H 0.215 0.785 41 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.753 3.906 -8.854 9.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.355 6.355 2 C -0.186 4.186 3 Si 0.722 3.278 4 C -0.059 4.059 5 C -0.157 4.157 6 C 0.028 3.972 7 C -0.363 4.363 8 C 0.384 3.616 9 O -0.482 6.482 10 N -0.365 5.365 11 C 0.000 4.000 12 C -0.144 4.144 13 C -0.129 4.129 14 H 0.098 0.902 15 C -0.185 4.185 16 C 0.008 3.992 17 H 0.131 0.869 18 F -0.203 7.203 19 C -0.195 4.195 20 C -0.048 4.048 21 N -0.157 5.157 22 N -0.037 5.037 23 C -0.010 4.010 24 C -0.166 4.166 25 H 0.252 0.748 26 H 0.121 0.879 27 H -0.217 1.217 28 H -0.231 1.231 29 H 0.153 0.847 30 H 0.252 0.748 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.106 0.894 34 H 0.112 0.888 35 H 0.093 0.907 36 H 0.143 0.857 37 H 0.139 0.861 38 H 0.084 0.916 39 H 0.252 0.748 40 H 0.232 0.768 41 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -0.612 4.709 -8.288 9.552 hybrid contribution 0.571 -1.500 1.361 2.104 sum -0.041 3.209 -6.927 7.634 Atomic orbital electron populations 1.86587 1.15901 1.82298 1.50755 1.25353 0.86011 1.11325 0.95920 0.93857 0.76832 0.72083 0.84996 1.20779 0.94076 0.93425 0.97618 1.20636 1.01182 0.96660 0.97185 1.19473 0.96057 0.94654 0.86991 1.19711 1.17695 1.04505 0.94416 1.17134 0.77523 0.80123 0.86869 1.90755 1.63497 1.73423 1.20570 1.45557 1.51702 1.28088 1.11201 1.21322 0.96358 0.91734 0.90617 1.21690 1.00051 0.94975 0.97654 1.22473 0.95906 0.96128 0.98389 0.90179 1.23612 0.96338 0.98599 0.99903 1.22740 1.01443 0.93951 0.81059 0.86859 1.92774 1.96010 1.83434 1.48096 1.23728 0.97068 0.95348 1.03364 1.24593 0.93492 0.95807 0.90899 1.77551 1.19491 1.07328 1.11361 1.46383 1.32456 1.19824 1.04998 1.22501 0.90492 0.83864 1.04128 1.21367 1.03453 1.03640 0.88141 0.74758 0.87861 1.21688 1.23103 0.84713 0.74768 0.92777 0.93255 0.89446 0.88793 0.90748 0.85728 0.86138 0.91577 0.74816 0.76801 0.76033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.67 12.88 -148.98 -1.92 -0.25 16 2 C -0.08 0.17 2.84 71.23 0.20 0.37 16 3 Si 0.82 -4.08 31.96 68.60 2.19 -1.88 16 4 C -0.05 0.05 4.53 -19.82 -0.09 -0.03 16 5 C -0.14 -0.97 9.35 22.30 0.21 -0.76 16 6 C 0.15 1.22 6.76 39.49 0.27 1.48 16 7 C -0.35 -2.60 6.17 -19.90 -0.12 -2.72 16 8 C 0.59 5.83 7.78 86.42 0.67 6.50 16 9 O -0.60 -11.10 15.71 -4.42 -0.07 -11.17 16 10 N -0.71 -0.84 5.55 -467.16 -2.59 -3.43 16 11 C 0.12 0.15 5.66 86.38 0.49 0.64 16 12 C -0.11 0.62 5.17 30.60 0.16 0.78 16 13 C -0.11 0.31 3.63 -10.27 -0.04 0.27 16 14 H 0.08 0.07 8.13 -2.39 -0.02 0.06 16 15 C -0.15 0.65 7.54 31.12 0.23 0.88 16 16 C 0.04 -0.04 5.69 31.12 0.18 0.14 16 17 H 0.11 -0.54 8.14 -2.39 -0.02 -0.56 16 18 F -0.22 -1.62 17.38 44.97 0.78 -0.84 16 19 C -0.16 0.41 7.53 31.12 0.23 0.65 16 20 C 0.13 0.19 11.44 85.42 0.98 1.17 16 21 N -0.34 -1.54 12.57 -56.62 -0.71 -2.26 16 22 N -0.27 -1.01 3.86 -187.28 -0.72 -1.73 16 23 C 0.12 -0.62 11.17 83.31 0.93 0.31 16 24 C -0.15 1.30 8.38 22.03 0.18 1.48 16 25 H 0.40 -5.76 8.08 -74.06 -0.60 -6.36 16 26 H 0.10 0.16 7.71 -2.38 -0.02 0.14 16 27 H -0.29 -0.65 7.11 99.48 0.71 0.06 16 28 H -0.30 -0.96 7.11 99.48 0.71 -0.25 16 29 H 0.14 1.52 7.01 -2.91 -0.02 1.50 16 30 H 0.42 -2.68 7.39 -92.71 -0.69 -3.37 16 31 H 0.05 0.23 8.14 -2.39 -0.02 0.22 16 32 H 0.05 0.25 8.14 -2.39 -0.02 0.23 16 33 H 0.09 -0.68 8.14 -2.39 -0.02 -0.70 16 34 H 0.09 -0.87 7.84 -2.39 -0.02 -0.89 16 35 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 36 H 0.12 -1.15 8.10 -2.39 -0.02 -1.16 16 37 H 0.12 -0.82 7.89 -2.39 -0.02 -0.84 16 38 H 0.07 0.04 8.14 -2.39 -0.02 0.02 16 39 H 0.24 -2.05 7.46 -2.91 -0.02 -2.07 16 40 H 0.22 -2.82 8.06 -2.91 -0.02 -2.84 16 41 H 0.22 -4.63 7.31 -2.91 -0.02 -4.65 16 Total: 0.00 -33.35 351.58 1.28 -32.07 By element: Atomic # 1 Polarization: -21.50 SS G_CDS: -0.17 Total: -21.67 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: 4.49 Total: 11.15 kcal Atomic # 7 Polarization: -3.40 SS G_CDS: -4.02 Total: -7.42 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: -1.99 Total: -11.42 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.78 Total: -0.84 kcal Atomic # 14 Polarization: -4.08 SS G_CDS: 2.19 Total: -1.88 kcal Total: -33.35 1.28 -32.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14412250_11618758.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.865 kcal (2) G-P(sol) polarization free energy of solvation -33.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds