Wall clock time and date at job start Sun Mar 7 2021 02:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86299 * 109.47225 * 2 1 4 4 C 1.50701 * 109.47238 * 239.99746 * 2 1 3 5 5 C 1.38234 * 120.00243 * 300.00147 * 4 2 1 6 6 C 1.38234 * 120.00240 * 180.02562 * 5 4 2 7 7 C 1.38233 * 120.00037 * 0.26327 * 6 5 4 8 8 C 1.50693 * 120.00207 * 179.72405 * 7 6 5 9 9 C 1.50709 * 109.47444 * 89.99457 * 8 7 6 10 10 O 1.21276 * 119.99531 * 0.02562 * 9 8 7 11 11 N 1.34771 * 120.00247 * 180.02562 * 9 8 7 12 12 C 1.46497 * 119.99945 * 180.02562 * 11 9 8 13 13 C 1.53003 * 109.47029 * 180.02562 * 12 11 9 14 14 C 1.52995 * 109.46937 * 180.02562 * 13 12 11 15 15 H 1.09004 * 112.85123 * 314.65782 * 14 13 12 16 16 C 1.53781 * 113.61941 * 85.86089 * 14 13 12 17 17 C 1.53954 * 87.01998 * 139.94899 * 16 14 13 18 18 H 1.09006 * 113.66685 * 220.06971 * 17 16 14 19 19 F 1.39899 * 113.61439 * 89.20195 * 17 16 14 20 20 C 1.53780 * 87.11480 * 334.63910 * 17 16 14 21 21 C 1.38238 * 119.99752 * 359.47832 * 7 6 5 22 22 C 1.38234 * 120.00005 * 0.52168 * 21 7 6 23 23 H 0.96706 * 113.99930 * 59.99823 * 1 2 3 24 24 H 1.08998 * 109.46821 * 119.99805 * 2 1 3 25 25 H 1.48499 * 110.00215 * 59.99963 * 3 2 1 26 26 H 1.48500 * 109.99921 * 181.32050 * 3 2 1 27 27 H 1.07999 * 119.99751 * 359.97438 * 5 4 2 28 28 H 1.08002 * 119.99744 * 179.97438 * 6 5 4 29 29 H 1.09000 * 109.47097 * 209.99342 * 8 7 6 30 30 H 1.09001 * 109.47081 * 329.99847 * 8 7 6 31 31 H 0.97006 * 119.99744 * 359.97438 * 11 9 8 32 32 H 1.09000 * 109.46784 * 299.99416 * 12 11 9 33 33 H 1.08993 * 109.47321 * 59.99709 * 12 11 9 34 34 H 1.09004 * 109.46766 * 299.99850 * 13 12 11 35 35 H 1.08998 * 109.47224 * 59.99216 * 13 12 11 36 36 H 1.08995 * 113.61515 * 254.52899 * 16 14 13 37 37 H 1.09004 * 113.60985 * 25.43321 * 16 14 13 38 38 H 1.09000 * 113.61314 * 270.81179 * 20 17 16 39 39 H 1.08996 * 113.61428 * 139.91074 * 20 17 16 40 40 H 1.07999 * 119.99927 * 180.24100 * 21 7 6 41 41 H 1.08001 * 120.00310 * 179.72165 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 1.5974 -2.0339 -1.4492 6 6 2.0586 -2.6857 -2.5776 7 6 2.8583 -2.0158 -3.4845 8 6 3.3663 -2.7281 -4.7114 9 6 2.3793 -2.5558 -5.8372 10 8 1.3636 -1.9170 -5.6606 11 7 2.6252 -3.1116 -7.0401 12 6 1.6660 -2.9436 -8.1345 13 6 2.1811 -3.6681 -9.3798 14 6 1.1796 -3.4921 -10.5230 15 1 0.1480 -3.6544 -10.2107 16 6 1.3834 -2.1969 -11.3267 17 6 1.0784 -3.0263 -12.5874 18 1 1.7102 -2.7756 -13.4395 19 9 -0.2813 -3.0705 -12.9136 20 6 1.5636 -4.2558 -11.8014 21 6 3.1879 -0.6907 -3.2684 22 6 2.7266 -0.0389 -2.1401 23 1 -0.3933 0.4418 -0.7651 24 1 1.7922 -0.5138 0.8900 25 1 1.5615 2.4679 1.2085 26 1 3.5346 1.7702 -0.0322 27 1 0.9768 -2.5589 -0.7381 28 1 1.7980 -3.7199 -2.7482 29 1 4.3282 -2.3070 -5.0039 30 1 3.4856 -3.7892 -4.4922 31 1 3.4378 -3.6223 -7.1813 32 1 0.7038 -3.3640 -7.8420 33 1 1.5473 -1.8826 -8.3540 34 1 3.1435 -3.2481 -9.6724 35 1 2.2995 -4.7291 -9.1600 36 1 0.6376 -1.4305 -11.1161 37 1 2.4044 -1.8168 -11.2906 38 1 2.6339 -4.4395 -11.8954 39 1 0.9631 -5.1489 -11.9735 40 1 3.8094 -0.1661 -3.9789 41 1 2.9878 0.9950 -1.9690 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14412250_12335836.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:32:21 Heat of formation + Delta-G solvation = -75.590762 kcal Electronic energy + Delta-G solvation = -22444.934211 eV Core-core repulsion = 18820.009943 eV Total energy + Delta-G solvation = -3624.924268 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 294.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.66648 -41.15555 -40.16647 -39.31607 -37.66481 -36.02946 -34.07134 -31.97699 -31.86727 -29.59773 -26.85552 -26.35003 -25.13540 -23.81487 -22.85247 -22.20417 -21.28572 -20.39799 -18.47313 -18.07400 -17.43488 -17.14499 -17.01458 -16.67379 -16.62850 -16.25570 -16.07678 -15.95232 -15.75357 -15.33358 -14.86822 -14.72145 -14.52805 -14.47323 -14.05962 -13.80112 -13.49235 -13.29181 -13.13687 -13.01029 -12.76162 -12.47927 -12.26448 -11.98555 -11.94497 -11.79492 -11.70220 -11.21150 -11.13410 -10.85341 -10.45632 -10.08761 -9.88167 -9.60537 -5.01204 0.23766 0.44994 1.29893 1.59899 1.66496 1.91778 2.20268 2.79787 3.29395 3.36481 3.48884 3.62609 3.63201 3.72334 3.79728 3.89829 3.91306 4.01768 4.05058 4.18272 4.29773 4.36931 4.45750 4.46775 4.48305 4.61227 4.62582 4.71894 4.74491 4.77857 4.84062 4.94431 5.02174 5.04065 5.08457 5.15980 5.21385 5.37585 5.47260 5.50753 5.53133 5.58954 6.01663 6.58592 6.70520 7.29975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.077 4.077 3 Si 0.775 3.225 4 C -0.128 4.128 5 C -0.109 4.109 6 C -0.117 4.117 7 C -0.072 4.072 8 C -0.098 4.098 9 C 0.510 3.490 10 O -0.582 6.582 11 N -0.719 5.719 12 C 0.120 3.880 13 C -0.106 4.106 14 C -0.110 4.110 15 H 0.079 0.921 16 C -0.156 4.156 17 C 0.043 3.957 18 H 0.113 0.887 19 F -0.222 7.222 20 C -0.148 4.148 21 C -0.110 4.110 22 C -0.124 4.124 23 H 0.393 0.607 24 H 0.105 0.895 25 H -0.298 1.298 26 H -0.281 1.281 27 H 0.122 0.878 28 H 0.131 0.869 29 H 0.134 0.866 30 H 0.128 0.872 31 H 0.419 0.581 32 H 0.047 0.953 33 H 0.054 0.946 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.121 0.879 38 H 0.124 0.876 39 H 0.073 0.927 40 H 0.143 0.857 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.293 -2.043 -4.777 8.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.187 4.187 3 Si 0.680 3.320 4 C -0.129 4.129 5 C -0.127 4.127 6 C -0.135 4.135 7 C -0.073 4.073 8 C -0.137 4.137 9 C 0.297 3.703 10 O -0.461 6.461 11 N -0.373 5.373 12 C -0.004 4.004 13 C -0.144 4.144 14 C -0.129 4.129 15 H 0.097 0.903 16 C -0.194 4.194 17 C 0.007 3.993 18 H 0.131 0.869 19 F -0.203 7.203 20 C -0.186 4.186 21 C -0.128 4.128 22 C -0.142 4.142 23 H 0.243 0.757 24 H 0.123 0.877 25 H -0.226 1.226 26 H -0.207 1.207 27 H 0.140 0.860 28 H 0.149 0.851 29 H 0.152 0.848 30 H 0.146 0.854 31 H 0.256 0.744 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.112 0.888 35 H 0.103 0.897 36 H 0.085 0.915 37 H 0.139 0.861 38 H 0.142 0.858 39 H 0.091 0.909 40 H 0.161 0.839 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 7.096 -1.326 -3.718 8.120 hybrid contribution -0.245 -0.843 0.245 0.911 sum 6.851 -2.169 -3.473 7.982 Atomic orbital electron populations 1.86445 1.17528 1.82230 1.50372 1.25234 0.85117 1.11158 0.97194 0.93575 0.78020 0.75621 0.84737 1.20413 0.99649 0.95340 0.97448 1.21080 0.99373 0.94390 0.97880 1.21244 0.97261 1.00711 0.94298 1.19602 0.97681 0.94531 0.95455 1.20759 0.99029 1.04311 0.89579 1.21039 0.86984 0.78082 0.84187 1.90744 1.29944 1.42133 1.83276 1.45922 1.25509 1.55142 1.10688 1.21287 0.92142 1.00419 0.86537 1.21676 0.99163 1.01635 0.91905 1.22474 0.99776 0.96365 0.94298 0.90270 1.23744 1.04340 0.97056 0.94235 1.22788 0.77210 1.00168 0.99155 0.86947 1.92774 1.36012 1.97313 1.94234 1.23614 1.03995 0.96640 0.94333 1.21247 1.00111 0.94080 0.97356 1.21176 0.98278 1.00039 0.94663 0.75685 0.87709 1.22640 1.20740 0.86022 0.85121 0.84837 0.85391 0.74395 0.93502 0.92746 0.88847 0.89682 0.91486 0.86094 0.85794 0.90858 0.83949 0.84131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.36 12.77 -148.98 -1.90 -4.27 16 2 C -0.08 -0.22 2.82 71.24 0.20 -0.02 16 3 Si 0.77 0.20 29.79 68.60 2.04 2.25 16 4 C -0.13 -0.50 5.39 -19.86 -0.11 -0.61 16 5 C -0.11 -0.56 9.61 22.27 0.21 -0.35 16 6 C -0.12 -0.41 9.70 22.27 0.22 -0.20 16 7 C -0.07 -0.10 4.37 -19.87 -0.09 -0.19 16 8 C -0.10 0.51 5.83 29.10 0.17 0.68 16 9 C 0.51 0.48 7.82 87.66 0.69 1.17 16 10 O -0.58 -6.87 16.03 -3.02 -0.05 -6.92 16 11 N -0.72 3.64 5.56 -463.07 -2.57 1.06 16 12 C 0.12 -0.33 5.67 86.38 0.49 0.16 16 13 C -0.11 0.90 5.15 30.59 0.16 1.06 16 14 C -0.11 0.52 3.62 -10.27 -0.04 0.49 16 15 H 0.08 -0.07 8.14 -2.39 -0.02 -0.09 16 16 C -0.16 0.70 7.54 31.18 0.24 0.94 16 17 C 0.04 -0.10 5.69 31.18 0.18 0.08 16 18 H 0.11 -0.67 8.14 -2.38 -0.02 -0.69 16 19 F -0.22 -1.35 17.38 44.97 0.78 -0.57 16 20 C -0.15 0.86 7.54 31.12 0.23 1.10 16 21 C -0.11 -0.15 9.70 22.27 0.22 0.07 16 22 C -0.12 -0.24 8.67 22.27 0.19 -0.05 16 23 H 0.39 -1.16 8.70 -74.05 -0.64 -1.80 16 24 H 0.11 0.39 7.96 -2.39 -0.02 0.37 16 25 H -0.30 -2.20 7.11 99.48 0.71 -1.50 16 26 H -0.28 -1.10 7.11 99.48 0.71 -0.39 16 27 H 0.12 0.59 8.06 -2.91 -0.02 0.56 16 28 H 0.13 0.06 8.06 -2.91 -0.02 0.04 16 29 H 0.13 -1.46 8.09 -2.39 -0.02 -1.48 16 30 H 0.13 -1.27 8.09 -2.39 -0.02 -1.29 16 31 H 0.42 -5.17 8.47 -92.70 -0.79 -5.95 16 32 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 33 H 0.05 0.03 8.14 -2.39 -0.02 0.01 16 34 H 0.09 -1.11 7.87 -2.38 -0.02 -1.13 16 35 H 0.08 -0.85 8.14 -2.39 -0.02 -0.87 16 36 H 0.07 -0.09 8.14 -2.39 -0.02 -0.10 16 37 H 0.12 -1.07 7.92 -2.38 -0.02 -1.09 16 38 H 0.12 -1.31 8.10 -2.39 -0.02 -1.33 16 39 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 40 H 0.14 -0.45 8.06 -2.91 -0.02 -0.48 16 41 H 0.14 -0.31 4.88 -2.91 -0.01 -0.32 16 Total: 0.00 -22.78 346.12 0.91 -21.87 By element: Atomic # 1 Polarization: -17.40 SS G_CDS: -0.35 Total: -17.75 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: 2.96 Total: 4.33 kcal Atomic # 7 Polarization: 3.64 SS G_CDS: -2.57 Total: 1.06 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: -1.95 Total: -11.18 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.78 Total: -0.57 kcal Atomic # 14 Polarization: 0.20 SS G_CDS: 2.04 Total: 2.25 kcal Total: -22.78 0.91 -21.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14412250_12335836.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.725 kcal (2) G-P(sol) polarization free energy of solvation -22.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds