Wall clock time and date at job start Sun Mar 7 2021 02:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86298 * 109.46858 * 2 1 4 4 C 1.50693 * 109.47661 * 239.99225 * 2 1 3 5 5 C 1.34457 * 126.48032 * 104.68331 * 4 2 1 6 6 N 1.36560 * 109.98594 * 179.86743 * 5 4 2 7 7 C 1.37836 * 109.85918 * 0.41609 * 6 5 4 8 8 C 1.38646 * 133.38335 * 179.72944 * 7 6 5 9 9 C 1.39314 * 119.66848 * 180.02562 * 8 7 6 10 10 C 1.47577 * 119.83117 * 180.02562 * 9 8 7 11 11 O 1.21588 * 120.00228 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99792 * 179.97438 * 10 9 8 13 13 C 1.46508 * 120.00103 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47273 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.46922 * 180.02562 * 14 13 12 16 16 H 1.08998 * 112.85229 * 314.66879 * 15 14 13 17 17 C 1.53781 * 113.61613 * 85.86996 * 15 14 13 18 18 C 1.53955 * 87.02276 * 139.94905 * 17 15 14 19 19 H 1.08995 * 113.74366 * 220.05481 * 18 17 15 20 20 F 1.39893 * 113.53640 * 89.18778 * 18 17 15 21 21 C 1.53785 * 87.10957 * 334.63621 * 18 17 15 22 22 C 1.40203 * 120.33892 * 359.97438 * 9 8 7 23 23 C 1.36238 * 120.37201 * 0.02562 * 22 9 8 24 24 C 1.39869 * 119.96142 * 359.97438 * 23 22 9 25 25 H 0.96697 * 114.00527 * 300.00583 * 1 2 3 26 26 H 1.09000 * 109.46638 * 119.99419 * 2 1 3 27 27 H 1.48506 * 109.99834 * 178.67912 * 3 2 1 28 28 H 1.48502 * 110.00011 * 299.99177 * 3 2 1 29 29 H 1.08004 * 125.00628 * 0.03380 * 5 4 2 30 30 H 0.96995 * 125.07403 * 180.14709 * 6 5 4 31 31 H 1.08002 * 120.16452 * 0.02562 * 8 7 6 32 32 H 0.97003 * 120.00624 * 0.02562 * 12 10 9 33 33 H 1.08998 * 109.47303 * 300.00525 * 13 12 10 34 34 H 1.09003 * 109.46459 * 60.00412 * 13 12 10 35 35 H 1.08998 * 109.47498 * 300.00544 * 14 13 12 36 36 H 1.09005 * 109.46766 * 60.00332 * 14 13 12 37 37 H 1.09000 * 113.61175 * 254.53178 * 17 15 14 38 38 H 1.08999 * 113.61116 * 25.42829 * 17 15 14 39 39 H 1.08995 * 113.61574 * 270.81135 * 21 18 17 40 40 H 1.08997 * 113.68650 * 139.92011 * 21 18 17 41 41 H 1.07999 * 119.81409 * 180.02562 * 22 9 8 42 42 H 1.08004 * 120.01652 * 179.97438 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9315 -0.7105 -1.2303 5 6 2.4564 -0.1361 -2.3268 6 7 2.8030 -1.0948 -3.2354 7 6 2.4945 -2.3433 -2.7395 8 6 2.6304 -3.6281 -3.2426 9 6 2.2125 -4.7156 -2.4787 10 6 2.3560 -6.0848 -3.0104 11 8 2.8375 -6.2615 -4.1128 12 7 1.9533 -7.1393 -2.2740 13 6 2.0952 -8.4985 -2.8021 14 6 1.5669 -9.5023 -1.7754 15 6 1.7157 -10.9217 -2.3266 16 1 1.3890 -11.0098 -3.3628 17 6 3.0966 -11.5441 -2.0611 18 6 2.3572 -12.8626 -1.7695 19 1 2.7683 -13.4193 -0.9275 20 9 2.1646 -13.6577 -2.9043 21 6 1.1343 -12.0052 -1.4031 22 6 1.6573 -4.5160 -1.2068 23 6 1.5201 -3.2569 -0.7049 24 6 1.9350 -2.1550 -1.4599 25 1 -0.3934 0.4417 0.7649 26 1 1.7923 -0.5138 0.8901 27 1 3.5346 1.7703 0.0322 28 1 1.5616 2.4678 -1.2086 29 1 2.5873 0.9267 -2.4671 30 1 3.2028 -0.9227 -4.1022 31 1 3.0581 -3.7851 -4.2218 32 1 1.5688 -6.9984 -1.3947 33 1 1.5258 -8.5903 -3.7269 34 1 3.1472 -8.7028 -3.0013 35 1 2.1367 -9.4103 -0.8508 36 1 0.5149 -9.2981 -1.5757 37 1 3.7339 -11.5858 -2.9444 38 1 3.6038 -11.1264 -1.1914 39 1 1.1040 -11.7139 -0.3533 40 1 0.1889 -12.4178 -1.7554 41 1 1.3365 -5.3652 -0.6217 42 1 1.0913 -3.1098 0.2754 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14412250_12335838.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:32:25 Heat of formation + Delta-G solvation = -34.809760 kcal Electronic energy + Delta-G solvation = -25281.059129 eV Core-core repulsion = 21336.025066 eV Total energy + Delta-G solvation = -3945.034063 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.59526 -42.48622 -40.75297 -39.47257 -37.84333 -37.48460 -36.06442 -33.36510 -32.21473 -30.77857 -30.32764 -27.00986 -26.60064 -26.16041 -24.26227 -23.63134 -22.85350 -21.40535 -20.62459 -20.50323 -19.25433 -18.38997 -18.26169 -17.49639 -17.31019 -16.93174 -16.74282 -16.52318 -15.94022 -15.73056 -15.63516 -15.43948 -15.29084 -15.07395 -14.81687 -14.72944 -14.53836 -14.42669 -13.84661 -13.77016 -13.63288 -13.27935 -13.14060 -12.73806 -12.57187 -12.50614 -12.11165 -12.08179 -11.92205 -11.89423 -11.30724 -11.20060 -10.83869 -10.76496 -10.24502 -10.08328 -9.36017 -8.83065 -5.05792 -0.26320 0.39004 1.25869 1.31572 1.61594 1.85969 1.92149 2.02927 2.23955 2.93770 3.16969 3.21831 3.48136 3.50932 3.55005 3.59106 3.68899 3.75811 3.77935 3.98208 4.00587 4.07801 4.17774 4.22584 4.33067 4.37611 4.46427 4.48232 4.53184 4.56101 4.66964 4.70177 4.72994 4.82289 4.91656 4.97704 5.00914 5.05197 5.23679 5.37165 5.38972 5.42214 5.49829 5.58952 5.97149 6.33812 6.50249 6.68656 7.25898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.034 4.034 3 Si 0.684 3.316 4 C -0.164 4.164 5 C 0.072 3.928 6 N -0.583 5.583 7 C 0.082 3.918 8 C -0.056 4.056 9 C -0.121 4.121 10 C 0.562 3.438 11 O -0.538 6.538 12 N -0.727 5.727 13 C 0.119 3.881 14 C -0.121 4.121 15 C -0.107 4.107 16 H 0.099 0.901 17 C -0.160 4.160 18 C 0.061 3.939 19 H 0.097 0.903 20 F -0.197 7.197 21 C -0.157 4.157 22 C -0.113 4.113 23 C -0.070 4.070 24 C -0.062 4.062 25 H 0.379 0.621 26 H 0.071 0.929 27 H -0.256 1.256 28 H -0.254 1.254 29 H 0.170 0.830 30 H 0.423 0.577 31 H 0.137 0.863 32 H 0.401 0.599 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.082 0.918 41 H 0.127 0.873 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.936 3.209 7.096 7.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C -0.145 4.145 3 Si 0.585 3.415 4 C -0.171 4.171 5 C -0.057 4.057 6 N -0.185 5.185 7 C -0.024 4.024 8 C -0.077 4.077 9 C -0.125 4.125 10 C 0.350 3.650 11 O -0.416 6.416 12 N -0.380 5.380 13 C -0.004 4.004 14 C -0.159 4.159 15 C -0.126 4.126 16 H 0.117 0.883 17 C -0.198 4.198 18 C 0.025 3.975 19 H 0.114 0.886 20 F -0.178 7.178 21 C -0.195 4.195 22 C -0.133 4.133 23 C -0.089 4.089 24 C -0.067 4.067 25 H 0.226 0.774 26 H 0.089 0.911 27 H -0.180 1.180 28 H -0.178 1.178 29 H 0.187 0.813 30 H 0.260 0.740 31 H 0.155 0.845 32 H 0.237 0.763 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.100 0.900 41 H 0.145 0.855 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.050 3.357 5.157 6.154 hybrid contribution 0.048 -0.360 -0.281 0.459 sum 0.098 2.997 4.876 5.724 Atomic orbital electron populations 1.86542 1.17586 1.81723 1.49441 1.23934 0.85262 1.09191 0.96098 0.95096 0.80854 0.77611 0.87925 1.19619 1.09529 0.91482 0.96472 1.21655 1.00570 0.94120 0.89342 1.41676 1.54735 1.04003 1.18121 1.18079 1.03233 0.86265 0.94809 1.20074 0.99489 0.87967 1.00177 1.19432 1.04907 0.92341 0.95817 1.18138 0.77632 0.84556 0.84644 1.90800 1.44399 1.86235 1.20152 1.45891 1.64635 1.06253 1.21187 1.21392 1.01978 0.79837 0.97220 1.21776 1.02178 0.93419 0.98510 1.22507 0.96443 0.93156 1.00467 0.88278 1.23717 0.97190 0.95166 1.03695 1.22422 0.98650 0.90553 0.85894 0.88561 1.92827 1.96005 1.75493 1.53468 1.23610 0.98370 0.96319 1.01202 1.20682 1.00630 0.97290 0.94707 1.20174 0.98637 0.90379 0.99670 1.19151 1.01072 0.92852 0.93664 0.77352 0.91100 1.18042 1.17820 0.81310 0.73952 0.84541 0.76328 0.91176 0.91129 0.90780 0.90664 0.89957 0.88170 0.88158 0.89973 0.85532 0.85105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.05 12.86 -35.23 -0.45 -0.50 16 2 C -0.03 0.01 3.05 36.00 0.11 0.12 16 3 Si 0.68 -1.29 30.80 -169.99 -5.24 -6.52 16 4 C -0.16 -0.37 5.60 -102.74 -0.58 -0.94 16 5 C 0.07 0.09 10.43 -16.78 -0.18 -0.09 16 6 N -0.58 -0.48 6.07 -10.68 -0.06 -0.54 16 7 C 0.08 0.23 7.26 -84.00 -0.61 -0.38 16 8 C -0.06 -0.17 9.61 -39.03 -0.37 -0.55 16 9 C -0.12 -0.31 5.87 -104.95 -0.62 -0.93 16 10 C 0.56 1.97 7.76 -12.45 -0.10 1.88 16 11 O -0.54 -3.90 16.31 5.29 0.09 -3.82 16 12 N -0.73 -0.12 5.50 -61.33 -0.34 -0.46 16 13 C 0.12 -0.02 5.67 -4.04 -0.02 -0.05 16 14 C -0.12 0.33 5.15 -26.73 -0.14 0.19 16 15 C -0.11 0.18 3.62 -89.81 -0.32 -0.14 16 16 H 0.10 -0.07 8.14 -51.93 -0.42 -0.49 16 17 C -0.16 0.25 7.54 -25.83 -0.19 0.06 16 18 C 0.06 -0.04 5.70 -25.83 -0.15 -0.19 16 19 H 0.10 -0.21 8.14 -51.93 -0.42 -0.63 16 20 F -0.20 -0.55 17.38 2.25 0.04 -0.51 16 21 C -0.16 0.31 7.54 -25.91 -0.20 0.12 16 22 C -0.11 -0.07 9.46 -39.56 -0.37 -0.44 16 23 C -0.07 -0.10 10.03 -39.69 -0.40 -0.50 16 24 C -0.06 -0.19 6.35 -105.05 -0.67 -0.86 16 25 H 0.38 -1.92 8.74 45.56 0.40 -1.52 16 26 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 27 H -0.26 -0.19 7.11 56.52 0.40 0.21 16 28 H -0.25 -0.20 7.04 56.52 0.40 0.20 16 29 H 0.17 -0.14 6.31 -52.48 -0.33 -0.47 16 30 H 0.42 -0.89 8.96 -40.82 -0.37 -1.26 16 31 H 0.14 0.38 7.62 -52.49 -0.40 -0.02 16 32 H 0.40 -1.04 6.46 -40.82 -0.26 -1.30 16 33 H 0.07 0.07 8.14 -51.93 -0.42 -0.35 16 34 H 0.07 0.06 8.14 -51.93 -0.42 -0.36 16 35 H 0.07 -0.27 7.87 -51.93 -0.41 -0.67 16 36 H 0.07 -0.24 8.14 -51.93 -0.42 -0.66 16 37 H 0.08 -0.06 8.14 -51.93 -0.42 -0.48 16 38 H 0.10 -0.30 7.92 -51.93 -0.41 -0.71 16 39 H 0.10 -0.35 8.10 -51.93 -0.42 -0.77 16 40 H 0.08 -0.11 8.14 -51.93 -0.42 -0.54 16 41 H 0.13 -0.33 6.36 -52.49 -0.33 -0.66 16 42 H 0.13 -0.05 8.06 -52.48 -0.42 -0.47 16 LS Contribution 355.04 15.07 5.35 5.35 Total: 0.00 -10.24 355.04 -10.95 -21.19 By element: Atomic # 1 Polarization: -5.96 SS G_CDS: -5.53 Total: -11.49 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -4.80 Total: -2.69 kcal Atomic # 7 Polarization: -0.60 SS G_CDS: -0.40 Total: -1.00 kcal Atomic # 8 Polarization: -3.95 SS G_CDS: -0.37 Total: -4.32 kcal Atomic # 9 Polarization: -0.55 SS G_CDS: 0.04 Total: -0.51 kcal Atomic # 14 Polarization: -1.29 SS G_CDS: -5.24 Total: -6.52 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -10.24 -10.95 -21.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14412250_12335838.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.620 kcal (2) G-P(sol) polarization free energy of solvation -10.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds